Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010277

Physical Location & Seq

Genomic Coordinates Reverse (-)

13107626 .. 13111656

Gene Structure 4031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G34850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGAATCATTTGGTGATAATCTCTGTGTTCTTGAGCTCAGTATTGTTGTTATATAGAGGAGAATCTGGAATCACAAGTAGTTTTATTCGATCTGAATGGCCTGCGGTTGATATACCACTTGATCATCATGTTTTCAAAGTCCCAAAAGGATATAATGCACCACAACAAGTACACATAACTCAAGGTGATTATGATGGTAAAGCTGTTATCATCTCTTGGGTTACACCTGATGAACCTGGTTCTAGCCAAGTACATTACGGTGCGGTTCAGGGGAAATATGAGTTTGTTGCTCAAGGGACTTACCATAACTACACGTTTTACAAGTATAAGTCTGGCTTTATTCATCACTGCCTTGTCTCTGACCTTGAGCATGATACAAAATACTATTACAAGATTGAAAGCGGTGAATCTTCTCGAGAGTTTTGGTTTGTTACACCACCACATGTACATCCAGATGCTTCCTACAAGTTTGGTATTATAGGCGATATGGGTCAGACATTCAACTCGTTATCCACGTTGGAACATTACATGGAGAGTGGAGCTCAGGCTGTTTTATTTCTTGGAGATCTTTCTTATGCTGATAGATATCAGTATAATGACGTTGGTGTGAGATGGGATAGCTGGGGTCGTTTTGTGGAGCGTAGTACCGCTTATCAACCGTGGCTTTGGTCTGCAGGAAATCATGAAGTAGATTACATGCCATACATGGGGGAGGTGACACCTTTCAGGAATTACCTTCAGCGTTACACTACGCCTTACTTAGCCTCAAAAAGTAGCAGTCCTCTTTGGTACGCTGTTAGGCGTGCATCTGCTCATATCATTGTCCTCTCCAGCTATTCGCCTTTTGTGAAGTATACCCCGCAATGGCACTGGCTTAGTGAAGAGCTTACAAGAGTTGATAGGGAGAAAACACCTTGGCTAATTGTTTTGATGCACGTCCCAATATACAACAGTAATGAAGCACATTTCATGGAGGGTGAAAGCATGCGAGCAGCTTTTGAGGAGTGGTTTGTCCAACACAAAGTTGATGTAATCTTTGCTGGGCATGTTCATGCCTACGAGAGATCGTACCGAATATCAAATGTGCGGTATAACGTGTCAAGCGGAGATCGTTACCCAGTTCCAGATAAGTCAGCGCCTGTTTATATCACAGTTGGAGACGGAGGAAATCAAGAAGGTCTGGCTGGAAGGTTTACGGAACCACAGCCAGATTATTCTGCATTTCGGGAAGCTAGCTATGGCCACTCTACTCTGGATATAAAGAACCGAACACACGCTATATACCACTGGAACCGCAATGATGATGGGAAGAAAGTGGCAACGGATGAATTTGTATTACACAACCAGTACTGGGGAAAGAACATTCGACGGAGAAAGCTTAAGAAGCATTATATCAGGAGTGTTGTTGGTGGCTGGATCGCCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

475

Amino Acids

55.01

Weight (kDa)

6.8

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	54 - 145	1.2e-21	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	156 - 353	6.6e-23	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	379 - 439	3.1e-20	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G34850
fragaria_vesca	FvH4_1g02440 FvH4_1g02440
malus_domestica	MD02G1021200.v1.1 MD15G1164300.v1.1
prunus_persica	Prupe.7G250300_v2.0.a1 Prupe.7G250300_v2.0.a1 Prupe.7G250300_v2.0.a1
pyrus_communis	pycom02g01880 pycom15g14740
rosa_chinensis	RchiOBHm_Chr2g0087401
rosa_laevigata	RLG00000015863
rosa_multiflora	Rmu_sc0006064.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153580
rosa_rugosa	Rorug01G0474900 Rorug01G0475000
rosa_samantha	Rh2AG028400 Rh2BG028300 Rh2CG028700 Rh2DG028500
rosa_wichuraiana	Rw2G002260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	854
AciI	CCGC	8 cut(s)	104, 263, 402, 648, 860, 1087, 1104, 1294
AclWI	GGATC	1 cut(s)	1424
AcoI	YGGCCR	1 cut(s)	1240
AcsI	RAATTY	1 cut(s)	1328
AcuI	CTGAAG	1 cut(s)	722
AfaI	GTAC	7 cut(s)	171, 252, 447, 646, 791, 1070, 1349
AfiI	CCNNNNNNNGG	3 cut(s)	707, 864, 1351
AflII	CTTAAG	1 cut(s)	1379
AflIII	ACRYGT	3 cut(s)	312, 442, 1095
AgsI	TTSAA	3 cut(s)	136, 398, 502
AjiI	CACGTC	1 cut(s)	937
AjnI	CCWGG	1 cut(s)	235
Alw21I	GWGCWC	2 cut(s)	38, 544
Alw26I	GTCTC	2 cut(s)	361, 1152
AlwI	GGATC	1 cut(s)	1424
AlwNI	CAGNNNCTG	1 cut(s)	1139
Ama87I	CYCGRG	1 cut(s)	414
AoxI	GGCC	2 cut(s)	98, 1240
ApeKI	GCWGC	1 cut(s)	992
ApoI	RAATTY	1 cut(s)	1328
AspLEI	GCGC	1 cut(s)	1138
AsuHPI	GGTGA	5 cut(s)	25, 197, 416, 727, 989
AsuNHI	GCTAGC	1 cut(s)	1232
AvaI	CYCGRG	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	1242
BanII	GRGCYC	2 cut(s)	38, 544
Bbv12I	GWGCWC	2 cut(s)	38, 544
BbvI	GCAGC	1 cut(s)	1004
BccI	CCATC	3 cut(s)	188, 606, 1298
BciT130I	CCWGG	1 cut(s)	237
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	361, 1152
BfaI	CTAG	2 cut(s)	243, 1233
BfmI	CTRYAG	1 cut(s)	672
BfoI	RGCGCY	1 cut(s)	1139
BfrI	CTTAAG	1 cut(s)	1379
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	1 cut(s)	993
BlsI	GCNGC	1 cut(s)	994
BmcAI	AGTACT	1 cut(s)	1349
Bme1390I	CCNGG	1 cut(s)	237
BmeT110I	CYCGRG	1 cut(s)	414
BmgBI	CACGTC	1 cut(s)	937
BmiI	GGNNCC	2 cut(s)	1200, 1292
BmrFI	CCNGG	1 cut(s)	237
BmrI	ACTGGG	2 cut(s)	1112, 1360
BmsI	GCATC	3 cut(s)	445, 815, 921
BmtI	GCTAGC	1 cut(s)	1236
BmuI	ACTGGG	2 cut(s)	1112, 1360
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
BpmI	CTGGAG	1 cut(s)	814
Bpu10I	CCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	4 cut(s)	52, 165, 276, 386
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	2 cut(s)	659, 914
Bsc4I	CCNNNNNNNGG	3 cut(s)	707, 864, 1351
Bse1I	ACTGG	5 cut(s)	875, 1118, 1292, 1345, 1355
Bse3DI	GCAATG	2 cut(s)	869, 1303
Bse8I	GATNNNNATC	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	659, 914
BseGI	GGATG	2 cut(s)	448, 1330
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	3 cut(s)	707, 864, 1351
BseMI	GCAATG	2 cut(s)	869, 1303
BseMII	CTCAG	2 cut(s)	51, 557
BseNI	ACTGG	5 cut(s)	875, 1118, 1292, 1345, 1355
BseRI	GAGGAG	2 cut(s)	72, 1016
BseXI	GCAGC	1 cut(s)	1004
BseYI	CCCAGC	2 cut(s)	621, 1040
BshFI	GGCC	2 cut(s)	100, 1242
BsiHKAI	GWGCWC	2 cut(s)	38, 544
BsiHKCI	CYCGRG	1 cut(s)	414
BslFI	GGGAC	3 cut(s)	125, 310, 923
BslI	CCNNNNNNNGG	3 cut(s)	707, 864, 1351
BsmAI	GTCTC	2 cut(s)	361, 1152
BsmBI	CGTCTC	1 cut(s)	1152
BsmFI	GGGAC	3 cut(s)	125, 310, 923
BsnI	GGCC	2 cut(s)	100, 1242
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	2 cut(s)	38, 544
Bsp1407I	TGTACA	1 cut(s)	445
Bsp143I	GATC	6 cut(s)	89, 121, 565, 1064, 1108, 1416
BspACI	CCGC	8 cut(s)	104, 263, 402, 648, 860, 1087, 1104, 1294
BspANI	GGCC	2 cut(s)	100, 1242
BspCNI	CTCAG	2 cut(s)	50, 556
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	2 cut(s)	1200, 1292
BspMAI	CTGCAG	1 cut(s)	676
BspOI	GCTAGC	1 cut(s)	1236
BspPI	GGATC	1 cut(s)	1424
BspQI	GCTCTTC	1 cut(s)	876
BspTI	CTTAAG	1 cut(s)	1379
BsrDI	GCAATG	2 cut(s)	869, 1303
BsrGI	TGTACA	1 cut(s)	445
BsrI	ACTGG	5 cut(s)	875, 1118, 1292, 1345, 1355
BssECI	CCNNGG	2 cut(s)	659, 914
BssMI	GATC	6 cut(s)	89, 121, 565, 1064, 1108, 1416
BssNAI	GTATAC	1 cut(s)	855
BssT1I	CCWWGG	1 cut(s)	914
Bst1107I	GTATAC	1 cut(s)	855
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	4 cut(s)	260, 660, 953, 1153
Bst6I	CTCTTC	1 cut(s)	876
BstAFI	CTTAAG	1 cut(s)	1379
BstAUI	TGTACA	1 cut(s)	445
BstC8I	GCNNGC	5 cut(s)	102, 804, 986, 990, 1234
BstDEI	CTNAG	4 cut(s)	37, 543, 760, 875
BstDSI	CCRYGG	1 cut(s)	659
BstF5I	GGATG	2 cut(s)	448, 1330
BstH2I	RGCGCY	1 cut(s)	1139
BstHHI	GCGC	1 cut(s)	1138
BstKTI	GATC	6 cut(s)	92, 124, 568, 1067, 1111, 1419
BstMAI	GTCTC	2 cut(s)	361, 1152
BstMBI	GATC	6 cut(s)	89, 121, 565, 1064, 1108, 1416
BstMWI	GCNNNNNNNGC	1 cut(s)	1384
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	4 cut(s)	446, 700, 988, 1049
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	1 cut(s)	1004
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BstZ17I	GTATAC	1 cut(s)	855
BsuRI	GGCC	2 cut(s)	100, 1242
BtgI	CCRYGG	1 cut(s)	659
BtrI	CACGTC	1 cut(s)	937
BtsCI	GGATG	2 cut(s)	448, 1330
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	3 cut(s)	346, 868, 1285
Cac8I	GCNNGC	5 cut(s)	102, 804, 986, 990, 1234
CaiI	CAGNNNCTG	1 cut(s)	1139
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	1 cut(s)	1138
CsiI	ACCWGGT	1 cut(s)	235
Csp6I	GTAC	7 cut(s)	170, 251, 446, 645, 790, 1069, 1348
CviQI	GTAC	7 cut(s)	170, 251, 446, 645, 790, 1069, 1348
DdeI	CTNAG	4 cut(s)	37, 543, 760, 875
DpnI	GATC	6 cut(s)	91, 123, 567, 1066, 1110, 1418
DpnII	GATC	6 cut(s)	89, 121, 565, 1064, 1108, 1416
EaeI	YGGCCR	1 cut(s)	1240
Eam1104I	CTCTTC	1 cut(s)	876
EarI	CTCTTC	1 cut(s)	876
Ecl136II	GAGCTC	2 cut(s)	36, 542
Eco130I	CCWWGG	1 cut(s)	914
Eco24I	GRGCYC	2 cut(s)	38, 544
Eco32I	GATATC	1 cut(s)	587
Eco53kI	GAGCTC	2 cut(s)	36, 542
Eco57I	CTGAAG	1 cut(s)	722
Eco88I	CYCGRG	1 cut(s)	414
EcoICRI	GAGCTC	2 cut(s)	36, 542
EcoRII	CCWGG	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	587
EcoT14I	CCWWGG	1 cut(s)	914
EcoT38I	GRGCYC	2 cut(s)	38, 544
ErhI	CCWWGG	1 cut(s)	914
Esp3I	CGTCTC	1 cut(s)	1152
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	3 cut(s)	125, 310, 923
FauI	CCCGC	1 cut(s)	867
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	854
Fnu4HI	GCNGC	1 cut(s)	993
FokI	GGATG	2 cut(s)	435, 1337
FriOI	GRGCYC	2 cut(s)	38, 544
Fsp4HI	GCNGC	1 cut(s)	993
FspBI	CTAG	2 cut(s)	243, 1233
GlaI	GCGC	1 cut(s)	1137
GluI	GCNGC	1 cut(s)	993
GsaI	CCCAGC	2 cut(s)	625, 1044
GsuI	CTGGAG	1 cut(s)	814
HaeII	RGCGCY	1 cut(s)	1139
HaeIII	GGCC	2 cut(s)	100, 1242
HhaI	GCGC	1 cut(s)	1138
Hin6I	GCGC	1 cut(s)	1136
HinP1I	GCGC	1 cut(s)	1136
HindIII	AAGCTT	1 cut(s)	1376
HinfI	GANTC	4 cut(s)	4, 62, 69, 407
HphI	GGTGA	5 cut(s)	25, 197, 416, 727, 989
Hpy166II	GTNNAC	3 cut(s)	172, 855, 1194
Hpy188I	TCNGA	3 cut(s)	94, 361, 495
Hpy8I	GTNNAC	3 cut(s)	172, 855, 1194
Hpy99I	CGWCG	1 cut(s)	1371
HpyAV	CCTTC	3 cut(s)	746, 1169, 1182
HpyCH4III	ACNGT	4 cut(s)	260, 660, 953, 1153
HpyCH4IV	ACGT	5 cut(s)	314, 515, 600, 936, 1095
HpyCH4V	TGCA	5 cut(s)	158, 674, 806, 934, 1220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1384
HpyF3I	CTNAG	4 cut(s)	37, 543, 760, 875
HpySE526I	ACGT	5 cut(s)	314, 515, 600, 936, 1095
HspAI	GCGC	1 cut(s)	1136
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	6 cut(s)	89, 121, 565, 1064, 1108, 1416
LguI	GCTCTTC	1 cut(s)	876
LmnI	GCTCC	2 cut(s)	539, 637
Lsp1109I	GCAGC	1 cut(s)	1004
LweI	GCATC	3 cut(s)	445, 815, 921
MabI	ACCWGGT	1 cut(s)	235
MaeI	CTAG	2 cut(s)	243, 1233
MaeII	ACGT	5 cut(s)	314, 515, 600, 936, 1095
MaeIII	GTNAC	5 cut(s)	220, 430, 715, 743, 1112
MalI	GATC	6 cut(s)	91, 123, 567, 1066, 1110, 1418
MboI	GATC	6 cut(s)	89, 121, 565, 1064, 1108, 1416
MboII	GAAGA	3 cut(s)	402, 893, 1321
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	2 cut(s)	38, 544
MlsI	TGGCCA	1 cut(s)	1242
MluCI	AATT	3 cut(s)	730, 921, 1328
MluNI	TGGCCA	1 cut(s)	1242
MmeI	TCCRAC	3 cut(s)	498, 1039, 1135
MnlI	CCTC	8 cut(s)	50, 706, 775, 792, 836, 967, 994, 1157
Mox20I	TGGCCA	1 cut(s)	1242
MscI	TGGCCA	1 cut(s)	1242
MseI	TTAA	2 cut(s)	1380, 1426
MslI	CAYNNNNRTG	3 cut(s)	258, 453, 1050
Msp20I	TGGCCA	1 cut(s)	1242
MspCI	CTTAAG	1 cut(s)	1379
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	1384
NdeII	GATC	6 cut(s)	89, 121, 565, 1064, 1108, 1416
NheI	GCTAGC	1 cut(s)	1232
NlaIV	GGNNCC	2 cut(s)	1200, 1292
NmuCI	GTSAC	1 cut(s)	715
NspI	RCATGY	4 cut(s)	446, 700, 988, 1049
PaeI	GCATGC	1 cut(s)	988
PaeR7I	CTCGAG	1 cut(s)	414
PagI	TCATGA	1 cut(s)	682
PciI	ACATGT	1 cut(s)	442
PciSI	GCTCTTC	1 cut(s)	876
PcsI	WCGNNNNNNNCGW	1 cut(s)	512
PfeI	GAWTC	4 cut(s)	4, 62, 69, 407
PkrI	GCNGC	1 cut(s)	994
PscI	ACATGT	1 cut(s)	442
Psp124BI	GAGCTC	2 cut(s)	38, 544
Psp6I	CCWGG	1 cut(s)	235
PspFI	CCCAGC	2 cut(s)	621, 1040
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	1200, 1292
PstI	CTGCAG	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	1139
PsuI	RGATCY	1 cut(s)	565
RsaI	GTAC	7 cut(s)	171, 252, 447, 646, 791, 1070, 1349
RsaNI	GTAC	7 cut(s)	170, 251, 446, 645, 790, 1069, 1348
RseI	CAYNNNNRTG	3 cut(s)	258, 453, 1050
SacI	GAGCTC	2 cut(s)	38, 544
SapI	GCTCTTC	1 cut(s)	876
SaqAI	TTAA	2 cut(s)	1380, 1426
SatI	GCNGC	1 cut(s)	993
Sau3AI	GATC	6 cut(s)	89, 121, 565, 1064, 1108, 1416
ScaI	AGTACT	1 cut(s)	1349
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	38, 544
SexAI	ACCWGGT	1 cut(s)	235
SfaNI	GCATC	3 cut(s)	445, 815, 921
SfcI	CTRYAG	1 cut(s)	672
Sfr274I	CTCGAG	1 cut(s)	414
SlaI	CTCGAG	1 cut(s)	414
SmiMI	CAYNNNNRTG	3 cut(s)	258, 453, 1050
SmlI	CTYRAG	6 cut(s)	31, 180, 291, 365, 414, 1379
SmoI	CTYRAG	6 cut(s)	31, 180, 291, 365, 414, 1379
SphI	GCATGC	1 cut(s)	988
Sse9I	AATT	3 cut(s)	730, 921, 1328
SsiI	CCGC	8 cut(s)	104, 263, 402, 648, 860, 1087, 1104, 1294
SspMI	CTAG	2 cut(s)	243, 1233
SstI	GAGCTC	2 cut(s)	38, 544
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	914
TaaI	ACNGT	4 cut(s)	260, 660, 953, 1153
TaiI	ACGT	5 cut(s)	317, 518, 603, 939, 1098
TaqI	TCGA	3 cut(s)	88, 415, 1366
TasI	AATT	3 cut(s)	730, 921, 1328
TatI	WGTACW	4 cut(s)	169, 250, 445, 1347
TfiI	GAWTC	4 cut(s)	4, 62, 69, 407
Tru1I	TTAA	2 cut(s)	1380, 1426
Tru9I	TTAA	2 cut(s)	1380, 1426
TscAI	CASTG	3 cut(s)	353, 875, 1292
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	1 cut(s)	992
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	8 cut(s)	17, 246, 332, 699, 958, 972, 1040, 1341
TspGWI	ACGGA	4 cut(s)	1176, 1211, 1337, 1384
TspRI	CASTG	3 cut(s)	353, 875, 1292
Vha464I	CTTAAG	1 cut(s)	1379
XapI	RAATTY	1 cut(s)	1328
XceI	RCATGY	4 cut(s)	446, 700, 988, 1049
XhoI	CTCGAG	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	854
XspI	CTAG	2 cut(s)	243, 1233
ZrmI	AGTACT	1 cut(s)	1349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.