Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010277

Physical Location & Seq

Genomic Coordinates Forward (+)

1348593 .. 1352678

Gene Structure 4086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02440.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGCAGGGGTGGCTAGGATGGAATCCATGCTGGTTCAGTTTGTTGTTAGTTGTTTGGTGTTTTTGAGCTGTTTGAGATATGGGAATGCAGGAATCACTAGTAATTTTGTTCGGTCAGAGTATCCATCGGTTGATATTCCGCTTGATCATAGAGTGTTTGCTGTTCCAAAGGGTCACAATGCTCCACAGCAAGTGCATATCACCCAAGGTGACTACGATGGAAAGGCTGTGATCATCTCATGGGTTACGGCTGATGAGCCAGGGACAAGTAAAGTGCAATATGGCACATCAGAGAAGAACTACGAGTTTTCTGCAGAGGGGACTATAACAAACTACACTTTCTATGAATACAAATCTGGATACATCCACCACTGTCATGTTGATGGCCTGGAGCATGACACAAAGTACTACTACAAAATTGGTAGTGGCGATTCTTCTCGAGAGTTTTGGTTTATAACACCGCCAATGGTTGGTCCAGATGCTCCTTATAAATTTGGAATTATAGGTGATTTGGGTCAGACATTTAACTCCCTTTCAACTCTTGAGCATTACATGCACAGTGGAGGGCAGACTGTCTTATTTCTTGGGGATATTTCTTATGCTGACAGATATCAGTATAATGATATTGGTATAAGGTGGGATTCATGGGGGCGATTTGCTGAGCAGAGTACTGCATATCAACCATGGATTTGGTCTGCTGGCAATCATGAAATTGATTACATGCCCTATCTGGGGGAAGTAACTCCATTCAAAAACTATCTTCAGCGGTTCGCTACTCCTTATTACACCTCAAAAAGTAGCAATCCTCTTTGGTATGCCATCAGACGTGCCTCAGCTCATATAATAGTACTTTCCAGTTATTCTCCATTTGTGAAATACACACCTCAATGGATGTGGCTGCGAGAAGAATTGAACAGGGTTGACAGGGAAAAGACACCTTGGCTGATAGTCCTTATGCATGTTCCAATCTACAATAGTAATGACGCACATTACATGGAAGGCGAAAGCATGCGAGCAGCATTTGAGAGTTGGTTTGTTCAGTACAAAGTTGACGTAATATTTGCTGGACATGTCCATGCATATGAAAGATCTTATAGAATCTCCAATATACACTACAACGTGTCAAGTGGTGACCAGTATCCCATACCGGACAAGTCTGCTCCTGTCTACATAACAGTTGGAGATGGTGGAAACCAAGAAGGTCTTGCTGGAAAGTTTAGAGATCCACAACCAGAATATTCTGCATTCCGAGAAGCGAGCTATGGGCATTCGACCCTGGAGATTCATAACAGGACACATGCACTGTACCACTGGAACCGCAACGATGACGGGAAGAAAATGGCAACTGATGCATTTGTATTGCATAACCAGTTCTGGGGTACAAATCACAGGAGGCGAAAACTGAAGAAGCATTTTGCTAGGAAATATATTGATCGAGCAGCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

483

Amino Acids

55.7

Weight (kDa)

6.76

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	62 - 153	2e-24	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	164 - 361	2.6e-22	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	387 - 445	1.6e-21	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G34850
fragaria_vesca	FvH4_1g02440 FvH4_1g02440
malus_domestica	MD02G1021200.v1.1 MD15G1164300.v1.1
prunus_persica	Prupe.7G250300_v2.0.a1 Prupe.7G250300_v2.0.a1 Prupe.7G250300_v2.0.a1
pyrus_communis	pycom02g01880 pycom15g14740
rosa_chinensis	RchiOBHm_Chr2g0087401
rosa_laevigata	RLG00000015863
rosa_multiflora	Rmu_sc0006064.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153580
rosa_rugosa	Rorug01G0474900 Rorug01G0475000
rosa_samantha	Rh2AG028400 Rh2BG028300 Rh2CG028700 Rh2DG028500
rosa_wichuraiana	Rw2G002260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	455, 489
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	1167
AciI	CCGC	4 cut(s)	140, 461, 766, 1318
AclWI	GGATC	1 cut(s)	1217
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	2 cut(s)	746, 1424
AfaI	GTAC	6 cut(s)	407, 670, 849, 1043, 1307, 1381
AfiI	CCNNNNNNNGG	4 cut(s)	470, 731, 732, 1375
AflIII	ACRYGT	2 cut(s)	1069, 1119
AgsI	TTSAA	3 cut(s)	537, 751, 913
AhlI	ACTAGT	1 cut(s)	98
AjiI	CACGTC	1 cut(s)	827
AjnI	CCWGG	3 cut(s)	259, 387, 1275
AluBI	AGCT	4 cut(s)	69, 836, 1260, 1442
AluI	AGCT	4 cut(s)	69, 836, 1260, 1442
AlwI	GGATC	1 cut(s)	1217
Ama87I	CYCGRG	1 cut(s)	438
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	3 cut(s)	898, 1016, 1439
ApoI	RAATTY	1 cut(s)	491
ArsI	GACNNNNNNTTYG	2 cut(s)	1043, 1075
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	4 cut(s)	193, 221, 518, 1142
AvaI	CYCGRG	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	473
BbvCI	CCTCAGC	1 cut(s)	832
BbvI	GCAGC	2 cut(s)	885, 1028
BccI	CCATC	6 cut(s)	13, 133, 212, 377, 827, 1178
BceAI	ACGGC	1 cut(s)	264
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	3 cut(s)	261, 389, 1277
BciVI	GTATCC	3 cut(s)	132, 353, 1149
BclI	TGATCA	2 cut(s)	145, 231
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	3 cut(s)	15, 99, 1419
BfmI	CTRYAG	1 cut(s)	312
BfuI	GTATCC	3 cut(s)	132, 353, 1149
BglII	AGATCT	1 cut(s)	1088
BisI	GCNGC	3 cut(s)	899, 1017, 1440
BlpI	GCTNAGC	1 cut(s)	660
BlsI	GCNGC	3 cut(s)	900, 1018, 1441
BmcAI	AGTACT	3 cut(s)	407, 670, 849
Bme1390I	CCNGG	3 cut(s)	261, 389, 1277
Bme18I	GGWCC	1 cut(s)	473
BmeT110I	CYCGRG	1 cut(s)	438
BmgBI	CACGTC	1 cut(s)	827
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	1 cut(s)	1316
BmrFI	CCNGG	3 cut(s)	261, 389, 1277
BmsI	GCATC	2 cut(s)	469, 1339
BpmI	CTGGAG	2 cut(s)	410, 1298
Bpu10I	CCTNAGC	1 cut(s)	832
Bpu1102I	GCTNAGC	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	563
BsaJI	CCNNGG	5 cut(s)	205, 260, 683, 938, 1275
BsaWI	WCCGGW	1 cut(s)	1147
Bsc4I	CCNNNNNNNGG	4 cut(s)	470, 731, 732, 1375
Bse1I	ACTGG	4 cut(s)	855, 1135, 1316, 1369
BseBI	CCWGG	3 cut(s)	261, 389, 1277
BseDI	CCNNGG	5 cut(s)	205, 260, 683, 938, 1275
BseGI	GGATG	3 cut(s)	24, 363, 897
BseLI	CCNNNNNNNGG	4 cut(s)	470, 731, 732, 1375
BseMII	CTCAG	2 cut(s)	651, 846
BseNI	ACTGG	4 cut(s)	855, 1135, 1316, 1369
BseXI	GCAGC	2 cut(s)	885, 1028
BshFI	GGCC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	1148
BslFI	GGGAC	2 cut(s)	277, 334
BslI	CCNNNNNNNGG	4 cut(s)	470, 731, 732, 1375
BsmFI	GGGAC	2 cut(s)	277, 334
BsmI	GAATGC	3 cut(s)	91, 1244, 1267
BsnI	GGCC	1 cut(s)	387
BsoBI	CYCGRG	1 cut(s)	438
Bsp143I	GATC	5 cut(s)	145, 231, 1088, 1222, 1432
Bsp1720I	GCTNAGC	1 cut(s)	660
Bsp19I	CCATGG	1 cut(s)	683
BspACI	CCGC	4 cut(s)	140, 461, 766, 1318
BspANI	GGCC	1 cut(s)	387
BspCNI	CTCAG	2 cut(s)	652, 845
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	1 cut(s)	1316
BspMAI	CTGCAG	1 cut(s)	316
BspPI	GGATC	1 cut(s)	1217
BsrI	ACTGG	4 cut(s)	855, 1135, 1316, 1369
BssECI	CCNNGG	5 cut(s)	205, 260, 683, 938, 1275
BssMI	GATC	5 cut(s)	145, 231, 1088, 1222, 1432
BssT1I	CCWWGG	3 cut(s)	205, 683, 938
Bst2UI	CCWGG	3 cut(s)	261, 389, 1277
Bst4CI	ACNGT	5 cut(s)	374, 560, 574, 1177, 1305
BstAPI	GCANNNNNTGC	2 cut(s)	553, 1349
BstC8I	GCNNGC	4 cut(s)	700, 1010, 1014, 1258
BstDEI	CTNAG	2 cut(s)	660, 832
BstDSI	CCRYGG	1 cut(s)	683
BstEII	GGTNACC	1 cut(s)	1130
BstF5I	GGATG	3 cut(s)	24, 363, 897
BstKTI	GATC	5 cut(s)	148, 234, 1091, 1225, 1435
BstMBI	GATC	5 cut(s)	145, 231, 1088, 1222, 1432
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 553, 1349
BstNI	CCWGG	3 cut(s)	261, 389, 1277
BstNSI	RCATGY	6 cut(s)	556, 724, 962, 1012, 1073, 1301
BstPI	GGTNACC	1 cut(s)	1130
BstSCI	CCNGG	3 cut(s)	259, 387, 1275
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	885, 1028
BstX2I	RGATCY	2 cut(s)	1088, 1222
BstXI	CCANNNNNNTGG	1 cut(s)	690
BstYI	RGATCY	2 cut(s)	1088, 1222
BsuI	GTATCC	3 cut(s)	132, 353, 1149
BsuRI	GGCC	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	683
BtrI	CACGTC	1 cut(s)	827
BtsCI	GGATG	3 cut(s)	24, 363, 897
BtsIMutI	CAGTG	4 cut(s)	370, 565, 1301, 1309
Cac8I	GCNNGC	4 cut(s)	700, 1010, 1014, 1258
CciI	TCATGA	1 cut(s)	706
Cfr13I	GGNCC	1 cut(s)	473
CseI	GACGC	1 cut(s)	992
Csp6I	GTAC	6 cut(s)	406, 669, 848, 1042, 1306, 1380
CspCI	CAANNNNNGTGG	2 cut(s)	875, 910
CviQI	GTAC	6 cut(s)	406, 669, 848, 1042, 1306, 1380
DdeI	CTNAG	2 cut(s)	660, 832
DpnI	GATC	5 cut(s)	147, 233, 1090, 1224, 1434
DpnII	GATC	5 cut(s)	145, 231, 1088, 1222, 1432
Eco130I	CCWWGG	3 cut(s)	205, 683, 938
Eco32I	GATATC	1 cut(s)	611
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	2 cut(s)	746, 1424
Eco88I	CYCGRG	1 cut(s)	438
Eco91I	GGTNACC	1 cut(s)	1130
EcoO65I	GGTNACC	1 cut(s)	1130
EcoRII	CCWGG	3 cut(s)	259, 387, 1275
EcoRV	GATATC	1 cut(s)	611
EcoT14I	CCWWGG	3 cut(s)	205, 683, 938
EcoT22I	ATGCAT	3 cut(s)	960, 1081, 1354
ErhI	CCWWGG	3 cut(s)	205, 683, 938
FalI	AAGNNNNNCTT	2 cut(s)	1188, 1220
FaqI	GGGAC	2 cut(s)	277, 334
FauNDI	CATATG	1 cut(s)	1081
FbaI	TGATCA	2 cut(s)	145, 231
FblI	GTMKAC	1 cut(s)	1167
Fnu4HI	GCNGC	3 cut(s)	899, 1017, 1440
FokI	GGATG	3 cut(s)	31, 350, 904
Fsp4HI	GCNGC	3 cut(s)	899, 1017, 1440
FspBI	CTAG	3 cut(s)	15, 99, 1419
GluI	GCNGC	3 cut(s)	899, 1017, 1440
GsuI	CTGGAG	2 cut(s)	410, 1298
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	1 cut(s)	1148
HgaI	GACGC	1 cut(s)	992
HincII	GTYRAC	2 cut(s)	922, 1051
HindII	GTYRAC	2 cut(s)	922, 1051
HinfI	GANTC	6 cut(s)	23, 93, 431, 641, 1098, 1282
HpaII	CCGG	1 cut(s)	1148
HphI	GGTGA	4 cut(s)	193, 221, 518, 1142
Hpy166II	GTNNAC	3 cut(s)	922, 1051, 1168
Hpy188I	TCNGA	5 cut(s)	118, 292, 519, 824, 1250
Hpy188III	TCNNGA	6 cut(s)	357, 438, 440, 476, 542, 707
Hpy8I	GTNNAC	3 cut(s)	922, 1051, 1168
HpyAV	CCTTC	2 cut(s)	992, 1193
HpyCH4III	ACNGT	5 cut(s)	374, 560, 574, 1177, 1305
HpyCH4IV	ACGT	3 cut(s)	826, 1053, 1119
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 553, 1349
HpyF3I	CTNAG	2 cut(s)	660, 832
HpySE526I	ACGT	3 cut(s)	826, 1053, 1119
Ksp22I	TGATCA	2 cut(s)	145, 231
Kzo9I	GATC	5 cut(s)	145, 231, 1088, 1222, 1432
LmnI	GCTCC	4 cut(s)	187, 391, 487, 1165
Lsp1109I	GCAGC	2 cut(s)	885, 1028
LweI	GCATC	2 cut(s)	469, 1339
MaeI	CTAG	3 cut(s)	15, 99, 1419
MaeII	ACGT	3 cut(s)	826, 1053, 1119
MaeIII	GTNAC	5 cut(s)	173, 209, 244, 739, 1130
MalI	GATC	5 cut(s)	147, 233, 1090, 1224, 1434
MboI	GATC	5 cut(s)	145, 231, 1088, 1222, 1432
MboII	GAAGA	6 cut(s)	307, 426, 752, 917, 1345, 1417
MflI	RGATCY	2 cut(s)	1088, 1222
MluCI	AATT	6 cut(s)	103, 417, 491, 498, 711, 908
MmeI	TCCRAC	1 cut(s)	1159
MnlI	CCTC	7 cut(s)	310, 557, 799, 816, 841, 894, 1386
Mph1103I	ATGCAT	3 cut(s)	960, 1081, 1354
MseI	TTAA	2 cut(s)	525, 1447
MslI	CAYNNNNRTG	5 cut(s)	375, 381, 886, 1074, 1080
MspA1I	CMGCKG	1 cut(s)	766
MspI	CCGG	1 cut(s)	1148
MspR9I	CCNGG	3 cut(s)	261, 389, 1277
Mva1269I	GAATGC	3 cut(s)	91, 1244, 1267
MvaI	CCWGG	3 cut(s)	261, 389, 1277
MwoI	GCNNNNNNNGC	3 cut(s)	11, 553, 1349
NcoI	CCATGG	1 cut(s)	683
NdeI	CATATG	1 cut(s)	1081
NdeII	GATC	5 cut(s)	145, 231, 1088, 1222, 1432
NlaIV	GGNNCC	1 cut(s)	1316
NmuCI	GTSAC	3 cut(s)	173, 209, 1130
NsiI	ATGCAT	3 cut(s)	960, 1081, 1354
NspI	RCATGY	6 cut(s)	556, 724, 962, 1012, 1073, 1301
PaeI	GCATGC	1 cut(s)	1012
PaeR7I	CTCGAG	1 cut(s)	438
PagI	TCATGA	1 cut(s)	706
PciI	ACATGT	1 cut(s)	1069
PctI	GAATGC	3 cut(s)	91, 1244, 1267
PfeI	GAWTC	6 cut(s)	23, 93, 431, 641, 1098, 1282
PflMI	CCANNNNNTGG	1 cut(s)	470
PkrI	GCNGC	3 cut(s)	900, 1018, 1441
PscI	ACATGT	1 cut(s)	1069
PsiI	TTATAA	2 cut(s)	455, 489
Psp6I	CCWGG	3 cut(s)	259, 387, 1275
PspEI	GGTNACC	1 cut(s)	1130
PspGI	CCWGG	3 cut(s)	259, 387, 1275
PspN4I	GGNNCC	1 cut(s)	1316
PspPI	GGNCC	1 cut(s)	473
PstI	CTGCAG	1 cut(s)	316
PsuI	RGATCY	2 cut(s)	1088, 1222
RsaI	GTAC	6 cut(s)	407, 670, 849, 1043, 1307, 1381
RsaNI	GTAC	6 cut(s)	406, 669, 848, 1042, 1306, 1380
RseI	CAYNNNNRTG	5 cut(s)	375, 381, 886, 1074, 1080
SaqAI	TTAA	2 cut(s)	525, 1447
SatI	GCNGC	3 cut(s)	899, 1017, 1440
Sau3AI	GATC	5 cut(s)	145, 231, 1088, 1222, 1432
Sau96I	GGNCC	1 cut(s)	473
ScaI	AGTACT	3 cut(s)	407, 670, 849
ScrFI	CCNGG	3 cut(s)	261, 389, 1277
SfaNI	GCATC	2 cut(s)	469, 1339
SfcI	CTRYAG	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	473
SlaI	CTCGAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	5 cut(s)	375, 381, 886, 1074, 1080
SmlI	CTYRAG	2 cut(s)	438, 542
SmoI	CTYRAG	2 cut(s)	438, 542
SpeI	ACTAGT	1 cut(s)	98
SphI	GCATGC	1 cut(s)	1012
Sse9I	AATT	6 cut(s)	103, 417, 491, 498, 711, 908
SsiI	CCGC	4 cut(s)	140, 461, 766, 1318
SspI	AATATT	2 cut(s)	1059, 1238
SspMI	CTAG	3 cut(s)	15, 99, 1419
StyD4I	CCNGG	3 cut(s)	259, 387, 1275
StyI	CCWWGG	3 cut(s)	205, 683, 938
TaaI	ACNGT	5 cut(s)	374, 560, 574, 1177, 1305
TaiI	ACGT	3 cut(s)	829, 1056, 1122
TaqI	TCGA	3 cut(s)	439, 1271, 1435
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	6 cut(s)	103, 417, 491, 498, 711, 908
TatI	WGTACW	4 cut(s)	405, 668, 847, 1041
TfiI	GAWTC	6 cut(s)	23, 93, 431, 641, 1098, 1282
Tru1I	TTAA	2 cut(s)	525, 1447
Tru9I	TTAA	2 cut(s)	525, 1447
TscAI	CASTG	4 cut(s)	377, 565, 1308, 1316
TseFI	GTSAC	3 cut(s)	173, 209, 1130
TseI	GCWGC	3 cut(s)	898, 1016, 1439
Tsp45I	GTSAC	3 cut(s)	173, 209, 1130
TspDTI	ATGAA	5 cut(s)	360, 633, 723, 1098, 1274
TspRI	CASTG	4 cut(s)	377, 565, 1308, 1316
Van91I	CCANNNNNTGG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	1 cut(s)	491
XceI	RCATGY	6 cut(s)	556, 724, 962, 1012, 1073, 1301
XhoI	CTCGAG	1 cut(s)	438
XmiI	GTMKAC	1 cut(s)	1167
XspI	CTAG	3 cut(s)	15, 99, 1419
ZrmI	AGTACT	3 cut(s)	407, 670, 849
Zsp2I	ATGCAT	3 cut(s)	960, 1081, 1354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.