Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010277

Physical Location & Seq

Genomic Coordinates Forward (+)

56530897 .. 56531100

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0475000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAACGAAGAGGCATCGGTGGACTCTTGCCGGCTTTCCGGCTTCGTTTGGCCCCAGGGAGTCGTCGTCGTCATGAACGAAGAGTCCTCGGTGGCCGGAAAGACTTGTTCCGGCGTCATTTGGCTTCGCCGAGTCGTCGTCGTCATGAAAACCAGAGAACCGCCATGGAAACCAGACCAGAGTTTCAACTCCGAGATAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

67

Amino Acids

7.44

Weight (kDa)

5.22

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G34850
fragaria_vesca	FvH4_1g02440 FvH4_1g02440
malus_domestica	MD02G1021200.v1.1 MD15G1164300.v1.1
prunus_persica	Prupe.7G250300_v2.0.a1 Prupe.7G250300_v2.0.a1 Prupe.7G250300_v2.0.a1
pyrus_communis	pycom02g01880 pycom15g14740
rosa_chinensis	RchiOBHm_Chr2g0087401
rosa_laevigata	RLG00000015863
rosa_multiflora	Rmu_sc0006064.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153580
rosa_rugosa	Rorug01G0474900 Rorug01G0475000
rosa_samantha	Rh2AG028400 Rh2BG028300 Rh2CG028700 Rh2DG028500
rosa_wichuraiana	Rw2G002260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	54
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
AoxI	GGCC	2 cut(s)	50, 93
AspS9I	GGNCC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	4 cut(s)	54, 55, 87, 164
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse118I	RCCGGY	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	4 cut(s)	54, 55, 87, 164
BseLI	CCNNNNNNNGG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	52, 95
BsiSI	CCGG	4 cut(s)	31, 39, 96, 111
BslI	CCNNNNNNNGG	1 cut(s)	198
BsnI	GGCC	2 cut(s)	52, 95
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	2 cut(s)	52, 95
BspHI	TCATGA	2 cut(s)	72, 144
BspLI	GGNNCC	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	4 cut(s)	54, 55, 87, 164
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	56
Bst6I	CTCTTC	2 cut(s)	3, 75
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	32
BstDSI	CCRYGG	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	52, 95
BtgI	CCRYGG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	32
CciI	TCATGA	2 cut(s)	72, 144
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	51
CseI	GACGC	1 cut(s)	103
CviAII	CATG	3 cut(s)	73, 145, 165
CviJI	RGCY	5 cut(s)	34, 42, 52, 95, 124
CviKI_1	RGCY	5 cut(s)	34, 42, 52, 95, 124
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	2 cut(s)	3, 75
EarI	CTCTTC	2 cut(s)	3, 75
Eco130I	CCWWGG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	3 cut(s)	76, 148, 168
FaiI	YATR	3 cut(s)	74, 146, 166
FatI	CATG	3 cut(s)	72, 144, 164
HaeIII	GGCC	2 cut(s)	52, 95
HapII	CCGG	4 cut(s)	31, 39, 96, 111
HgaI	GACGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	76, 148, 168
HinfI	GANTC	4 cut(s)	23, 60, 83, 132
HpaII	CCGG	4 cut(s)	31, 39, 96, 111
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	73, 145
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	4 cut(s)	68, 71, 140, 143
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	76, 148, 168
KroI	GCCGGC	1 cut(s)	30
KroNI	GCCGGC	1 cut(s)	32
LpnPI	CCDG	9 cut(s)	41, 44, 52, 68, 109, 124, 166, 186, 191
LweI	GCATC	1 cut(s)	23
MboII	GAAGA	2 cut(s)	20, 92
MlyI	GAGTC	4 cut(s)	17, 69, 92, 141
MnlI	CCTC	2 cut(s)	4, 97
MroNI	GCCGGC	1 cut(s)	30
MspI	CCGG	4 cut(s)	31, 39, 96, 111
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
NaeI	GCCGGC	1 cut(s)	32
NcoI	CCATGG	1 cut(s)	164
NgoMIV	GCCGGC	1 cut(s)	30
NlaIII	CATG	3 cut(s)	76, 148, 168
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	155
PagI	TCATGA	2 cut(s)	72, 144
PasI	CCCWGGG	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	32
PleI	GAGTC	4 cut(s)	17, 68, 91, 140
PpsI	GAGTC	4 cut(s)	17, 68, 91, 140
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	4 cut(s)	17, 69, 92, 141
ScrFI	CCNGG	1 cut(s)	56
SfaNI	GCATC	1 cut(s)	23
SsiI	CCGC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	164
TspDTI	ATGAA	3 cut(s)	17, 89, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.