Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010277

Physical Location & Seq

Genomic Coordinates Reverse (-)

56525371 .. 56527434

Gene Structure 2064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0474900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTACACCAATGATGGCTTGGCTCTGTTAGCGCTGGCCTCTAATGCTGTTCACAAGATTTGGAAATGGCCGCGTGATGACAGGAATAATCCATCAGGAAAGGCTAGTGCATATGTTGTTCCACAGTTGTGGCAGCCTCGGAATGGAATTCTTATGGCTAATGATGTAAATGACAATAAGACTGCTGAGGAATATACTGCATGCATTGCTGTATATAAAAATGGTTCTTACATGATGTCTGCATCTGGCGGTAAGGTCTCTTTGTTCAACATGATGACATTTAAGGTCAAAACCAAACTGAAGGGTCACCAGAATCGGATAACGGGCCTTGCGTTTTCCCAAACTCTTAACATACTGGTTTCTTCAGGAGCTGATGCCCAGTGGTCTCCCAAAGATGCACTTGCTGCTCCCATCTCATGTGCAATATATTCATGCGATGGTTTGTTGGTTTATGCTACTTTTTTTGACGGTGCTGTGGGAGTTTTTGTTGCTAATAGCTTAAGATTCAGATGTCGAATAGCGCCTTCTGCTTATATACCATCATTTTCTCTCAGCGGTGGCAACCCCTCCTATCCTCTGGTTGTAGCAGCTCATCCATCTGAGCCTAACCAGATTGCAGTTGGCATGACTGAGGGGTCAGTGCATGTGGTTGAACCATCTGATGCAGAGCTGAAGTGGGGTGGCACACCCTCTCAAGATAATGGTCCTTCCAATTCATCAAATCATTCTCTTAGTAGTCAAGCATCAGAACTTCCTTCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

254

Amino Acids

27.17

Weight (kDa)

8.3

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	43 - 127	3.9e-08	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	67 - 162	6.5e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G34850
fragaria_vesca	FvH4_1g02440 FvH4_1g02440
malus_domestica	MD02G1021200.v1.1 MD15G1164300.v1.1
prunus_persica	Prupe.7G250300_v2.0.a1 Prupe.7G250300_v2.0.a1 Prupe.7G250300_v2.0.a1
pyrus_communis	pycom02g01880 pycom15g14740
rosa_chinensis	RchiOBHm_Chr2g0087401
rosa_laevigata	RLG00000015863
rosa_multiflora	Rmu_sc0006064.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153580
rosa_rugosa	Rorug01G0474900 Rorug01G0475000
rosa_samantha	Rh2AG028400 Rh2BG028300 Rh2CG028700 Rh2DG028500
rosa_wichuraiana	Rw2G002260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	634
AccII	CGCG	1 cut(s)	73
AciI	CCGC	3 cut(s)	71, 249, 555
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	147
AcuI	CTGAAG	3 cut(s)	320, 348, 692
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	143
AflII	CTTAAG	1 cut(s)	499
AgsI	TTSAA	2 cut(s)	268, 653
AjnI	CCWGG	1 cut(s)	758
AleI	CACNNNNGTG	1 cut(s)	127
AluBI	AGCT	4 cut(s)	371, 498, 590, 670
AluI	AGCT	4 cut(s)	371, 498, 590, 670
Alw26I	GTCTC	2 cut(s)	262, 390
AlwNI	CAGNNNCTG	1 cut(s)	371
Aor51HI	AGCGCT	1 cut(s)	33
AoxI	GGCC	3 cut(s)	36, 68, 325
ApeKI	GCWGC	3 cut(s)	133, 404, 587
ApoI	RAATTY	1 cut(s)	147
AspLEI	GCGC	2 cut(s)	34, 523
AspS9I	GGNCC	2 cut(s)	325, 704
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	704
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	145, 391, 599
BccI	CCATC	7 cut(s)	8, 100, 419, 431, 547, 604, 664
BciT130I	CCWGG	1 cut(s)	760
BcoDI	GTCTC	2 cut(s)	262, 390
BfaI	CTAG	1 cut(s)	105
BfoI	RGCGCY	2 cut(s)	35, 524
BfrI	CTTAAG	1 cut(s)	499
BisI	GCNGC	4 cut(s)	71, 134, 405, 588
BlsI	GCNGC	4 cut(s)	72, 135, 406, 589
Bme1390I	CCNGG	1 cut(s)	760
Bme18I	GGWCC	1 cut(s)	704
BmgT120I	GGNCC	2 cut(s)	325, 704
BmrFI	CCNGG	1 cut(s)	760
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	5 cut(s)	251, 364, 385, 652, 752
BmuI	ACTGGG	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	678
BsaI	GGTCTC	2 cut(s)	262, 390
BsaJI	CCNNGG	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	360, 379
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	760
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	592
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	4 cut(s)	177, 565, 591, 621
BseNI	ACTGG	2 cut(s)	360, 379
BseXI	GCAGC	3 cut(s)	145, 391, 599
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	3 cut(s)	38, 70, 327
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	2 cut(s)	262, 390
BsnI	GGCC	3 cut(s)	38, 70, 327
Bso31I	GGTCTC	2 cut(s)	262, 390
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	3 cut(s)	71, 249, 555
BspANI	GGCC	3 cut(s)	38, 70, 327
BspCNI	CTCAG	4 cut(s)	178, 564, 592, 622
BspFNI	CGCG	1 cut(s)	73
BspTI	CTTAAG	1 cut(s)	499
BspTNI	GGTCTC	2 cut(s)	262, 390
BsrDI	GCAATG	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	360, 379
BssECI	CCNNGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	760
Bst4CI	ACNGT	2 cut(s)	126, 470
BstAFI	CTTAAG	1 cut(s)	499
BstAPI	GCANNNNNTGC	2 cut(s)	206, 404
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	36, 202
BstDEI	CTNAG	5 cut(s)	186, 551, 600, 630, 731
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	592
BstFNI	CGCG	1 cut(s)	73
BstH2I	RGCGCY	2 cut(s)	35, 524
BstHHI	GCGC	2 cut(s)	34, 523
BstMAI	GTCTC	2 cut(s)	262, 390
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 44, 206, 404, 527
BstNI	CCWGG	1 cut(s)	760
BstNSI	RCATGY	2 cut(s)	204, 647
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	758
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	3 cut(s)	145, 391, 599
BstXI	CCANNNNNNTGG	1 cut(s)	129
BsuRI	GGCC	3 cut(s)	38, 70, 327
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	592
BtsIMutI	CAGTG	2 cut(s)	386, 645
Cac8I	GCNNGC	2 cut(s)	36, 202
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	2 cut(s)	34, 523
Cfr13I	GGNCC	2 cut(s)	325, 704
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	7 cut(s)	201, 232, 271, 417, 432, 625, 644
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	5 cut(s)	186, 551, 600, 630, 731
DrdI	GACNNNNNNGTC	1 cut(s)	634
DseDI	GACNNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	68
Eco31I	GGTCTC	2 cut(s)	262, 390
Eco47I	GGWCC	1 cut(s)	704
Eco47III	AGCGCT	1 cut(s)	33
Eco57I	CTGAAG	3 cut(s)	320, 348, 692
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	758
EcoT22I	ATGCAT	1 cut(s)	206
FaeI	CATG	7 cut(s)	204, 235, 274, 420, 435, 628, 647
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	7 cut(s)	200, 231, 270, 416, 431, 624, 643
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	4 cut(s)	71, 134, 405, 588
FokI	GGATG	1 cut(s)	579
Fsp4HI	GCNGC	4 cut(s)	71, 134, 405, 588
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	2 cut(s)	33, 522
GluI	GCNGC	4 cut(s)	71, 134, 405, 588
HaeII	RGCGCY	2 cut(s)	35, 524
HaeIII	GGCC	3 cut(s)	38, 70, 327
HhaI	GCGC	2 cut(s)	34, 523
Hin1II	CATG	7 cut(s)	204, 235, 274, 420, 435, 628, 647
Hin6I	GCGC	2 cut(s)	32, 521
HinP1I	GCGC	2 cut(s)	32, 521
HinfI	GANTC	2 cut(s)	313, 504
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	6, 52
Hpy188I	TCNGA	6 cut(s)	141, 318, 509, 601, 661, 748
Hpy188III	TCNNGA	3 cut(s)	96, 366, 695
Hpy8I	GTNNAC	2 cut(s)	6, 52
HpyAV	CCTTC	4 cut(s)	295, 534, 717, 765
HpyCH4III	ACNGT	2 cut(s)	126, 470
HpyCH4V	TGCA	9 cut(s)	110, 200, 204, 242, 398, 422, 617, 643, 665
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 44, 206, 404, 527
HpyF3I	CTNAG	5 cut(s)	186, 551, 600, 630, 731
Hsp92II	CATG	7 cut(s)	204, 235, 274, 420, 435, 628, 647
HspAI	GCGC	2 cut(s)	32, 521
LmnI	GCTCC	2 cut(s)	368, 412
Lsp1109I	GCAGC	3 cut(s)	145, 391, 599
LweI	GCATC	5 cut(s)	251, 364, 385, 652, 752
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	305
MboII	GAAGA	1 cut(s)	354
MluCI	AATT	2 cut(s)	147, 712
MnlI	CCTC	7 cut(s)	49, 147, 181, 577, 585, 625, 700
Mph1103I	ATGCAT	1 cut(s)	206
MseI	TTAA	3 cut(s)	282, 348, 500
MslI	CAYNNNNRTG	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	555
MspCI	CTTAAG	1 cut(s)	499
MspR9I	CCNGG	1 cut(s)	760
MvaI	CCWGG	1 cut(s)	760
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	5 cut(s)	29, 44, 206, 404, 527
NdeI	CATATG	1 cut(s)	112
NlaIII	CATG	7 cut(s)	204, 235, 274, 420, 435, 628, 647
NmuCI	GTSAC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	206
NspI	RCATGY	2 cut(s)	204, 647
OliI	CACNNNNGTG	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	313, 504
PkrI	GCNGC	4 cut(s)	72, 135, 406, 589
Psp6I	CCWGG	1 cut(s)	758
PspEI	GGTNACC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	758
PspPI	GGNCC	2 cut(s)	325, 704
PstNI	CAGNNNCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	127
SaqAI	TTAA	3 cut(s)	282, 348, 500
SatI	GCNGC	4 cut(s)	71, 134, 405, 588
Sau96I	GGNCC	2 cut(s)	325, 704
ScrFI	CCNGG	1 cut(s)	760
SetI	ASST	7 cut(s)	258, 288, 373, 500, 592, 672, 764
SfaNI	GCATC	5 cut(s)	251, 364, 385, 652, 752
SinI	GGWCC	1 cut(s)	704
SmiMI	CAYNNNNRTG	1 cut(s)	127
SmlI	CTYRAG	2 cut(s)	499, 693
SmoI	CTYRAG	2 cut(s)	499, 693
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	2 cut(s)	147, 712
SsiI	CCGC	3 cut(s)	71, 249, 555
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	758
TaaI	ACNGT	2 cut(s)	126, 470
TaqI	TCGA	1 cut(s)	514
TasI	AATT	2 cut(s)	147, 712
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	313, 504
Tru1I	TTAA	3 cut(s)	282, 348, 500
Tru9I	TTAA	3 cut(s)	282, 348, 500
TscAI	CASTG	2 cut(s)	386, 645
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	3 cut(s)	133, 404, 587
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	420, 705
TspRI	CASTG	2 cut(s)	386, 645
Vha464I	CTTAAG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	704
XapI	RAATTY	1 cut(s)	147
XceI	RCATGY	2 cut(s)	204, 647
XcmI	CCANNNNNNNNNTGG	2 cut(s)	16, 617
XspI	CTAG	1 cut(s)	105
Zsp2I	ATGCAT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.