Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010277

Physical Location & Seq

Genomic Coordinates Forward (+)

2154113 .. 2157664

Gene Structure 3552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG028700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGCTGGGGTTGCTAGGATGGAATCCATGTTGGTTCAATTTGTTGTCAGCTGTTTGGTGTTGTTGAGCTGTTTGAGAAATGGGAATGCAGGAATGACTAGTAGCTTTGTTCGGTCCGAGTATCCATCGGTTGATATTCCGCTTGATCATAAAGTGTTTTCTGTTCCAAAGGGTCATAATGCTCCACAGCAAGTGCATATCACCCAAGGTGACTATGATGGAAAGGCTGTGATCATCTCATGGGTTACAGCTGATGAGCCTGGGACAAGTAAAGTACAATATGGCACATCAGAGAAGAAGTACGAGTTTTCTGCAGAGGGGGCTATAACAAACTACACCTTCTATGAATACAAATCTGGATACATCCATCACTGTCATGTTAATGGCCTAGAGCATGACACTAAGTACTACTACAAAATTGGAAGTGGCGATTCTTCTCGAGAGTTTTGGTTTATAACACCTCCAAAGATTAGTCCTGATGCTCCTTACAAATTTGGAATTATAGGTGATTTGGGTCAGACATTTAACTCCCTGTCAACTCTTGAGCATTACATGCAGAGTGGAGGGCAGGCTGTCTTATTTCTTGGGGATCTTTCTTATGCTGATAGATATCAGTATAACGATATTGGTATAAGGTGGGATTCATGGGGGCGATTTGTTGAGCAGAGTACTGCATATCAATCATGGATTTGGTCTGCTGGCAATCACGAAATTGATTACATGCCTTATCTGGGGGAAGTTACTCCATTCAAAAACTATCTTCAGCGGTATGCTACTCCTTATTACGCCTCCAAAAGTAGCAATCCTCTTTGGTATGCCATCAGACGTGCCTCGGCTCATATAATAGTGCTGTCCAGTTATTCTCCATTTGTGAAATACACGCCTCAATGGATGTGGCTGCGAGAAGAATTGGAAAGGGTTGACAGGGAAAAGACACCTTGGCTGATAGTCCTTATGCATATTCCAATCTACAATAGTAATGATGCACATTACATGGAAGGCGAAAGCATGCGATCAGTATTTGAGAGTTGGTTTATTCATTACAGAGTTGATGTAGTGTTTGCTGGCCATGTCCATGCATATGAAAGATCATATAGAATCTCAAATATACACTACAACGTAACAAGTGGTTACCAGTACCCCATACCAGACAAGTTGGCTCCTGTCTACATAACTGTTGGAGATGGAGGGAACCAAGAAGGTCTTGCTGGAAGGTTTAGAGATCCACAACCAGAATATTCTGCATTCCGAGAAGCAAGCTATGGGCATTCAACACTGGAGATTCATAACCGGACACATGCACTTTACCACTGGAACCGCAATGATGACGGGAAGAAAATGGCAACTGACGCATTTGTATTGCATAACCAGTACTGGGGTAGAAATCAGAGAAGGCGAAAACTGAAGAAGCATTATGCTAGGAAATATATTGATCGAGTTGCAGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

483

Amino Acids

55.99

Weight (kDa)

7.76

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	62 - 153	7.3e-24	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	164 - 361	1.6e-21	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	387 - 445	2.9e-21	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G34850
fragaria_vesca	FvH4_1g02440 FvH4_1g02440
malus_domestica	MD02G1021200.v1.1 MD15G1164300.v1.1
prunus_persica	Prupe.7G250300_v2.0.a1 Prupe.7G250300_v2.0.a1 Prupe.7G250300_v2.0.a1
pyrus_communis	pycom02g01880 pycom15g14740
rosa_chinensis	RchiOBHm_Chr2g0087401
rosa_laevigata	RLG00000015863
rosa_multiflora	Rmu_sc0006064.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153580
rosa_rugosa	Rorug01G0474900 Rorug01G0475000
rosa_samantha	Rh2AG028400 Rh2BG028300 Rh2CG028700 Rh2DG028500
rosa_wichuraiana	Rw2G002260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
AccI	GTMKAC	1 cut(s)	1167
AciI	CCGC	3 cut(s)	140, 766, 1318
AclWI	GGATC	2 cut(s)	597, 1217
AcoI	YGGCCR	1 cut(s)	1066
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	2 cut(s)	746, 1424
AfaI	GTAC	6 cut(s)	276, 302, 407, 670, 1139, 1373
AfiI	CCNNNNNNNGG	2 cut(s)	731, 1375
AgsI	TTSAA	3 cut(s)	38, 751, 1272
AhlI	ACTAGT	1 cut(s)	98
AjiI	CACGTC	1 cut(s)	827
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	6 cut(s)	51, 69, 105, 251, 1260, 1445
AluI	AGCT	6 cut(s)	51, 69, 105, 251, 1260, 1445
AlwI	GGATC	2 cut(s)	597, 1217
Ama87I	CYCGRG	1 cut(s)	438
AoxI	GGCC	2 cut(s)	385, 1066
ApeKI	GCWGC	2 cut(s)	898, 1442
ApoI	RAATTY	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	3 cut(s)	193, 221, 518
AvaI	CYCGRG	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	1068
BbvI	GCAGC	1 cut(s)	885
BccI	CCATC	6 cut(s)	13, 133, 212, 375, 827, 1178
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	2 cut(s)	132, 353
BclI	TGATCA	2 cut(s)	145, 231
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	4 cut(s)	15, 99, 389, 1419
BfmI	CTRYAG	1 cut(s)	312
BfuI	GTATCC	2 cut(s)	132, 353
BisI	GCNGC	2 cut(s)	899, 1443
BlsI	GCNGC	2 cut(s)	900, 1444
BmcAI	AGTACT	3 cut(s)	407, 670, 1373
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	438
BmgBI	CACGTC	1 cut(s)	827
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	3 cut(s)	1161, 1193, 1316
BmrFI	CCNGG	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	1384
BmsI	GCATC	2 cut(s)	469, 973
BmuI	ACTGGG	1 cut(s)	1384
BpmI	CTGGAG	1 cut(s)	1298
BpuEI	CTTGAG	1 cut(s)	563
BsaBI	GATNNNNATC	1 cut(s)	609
BsaJI	CCNNGG	4 cut(s)	205, 260, 831, 938
BsaWI	WCCGGW	1 cut(s)	1290
Bsc4I	CCNNNNNNNGG	2 cut(s)	731, 1375
Bse1I	ACTGG	6 cut(s)	855, 1135, 1281, 1316, 1369, 1379
Bse3DI	GCAATG	1 cut(s)	1327
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	4 cut(s)	205, 260, 831, 938
BseGI	GGATG	3 cut(s)	24, 363, 897
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	2 cut(s)	731, 1375
BseMI	GCAATG	1 cut(s)	1327
BseNI	ACTGG	6 cut(s)	855, 1135, 1281, 1316, 1369, 1379
BseXI	GCAGC	1 cut(s)	885
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	2 cut(s)	387, 1068
BsiHKCI	CYCGRG	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	1291
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	2 cut(s)	731, 1375
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	3 cut(s)	91, 1244, 1267
BsnI	GGCC	2 cut(s)	387, 1068
BsoBI	CYCGRG	1 cut(s)	438
Bsp143I	GATC	7 cut(s)	145, 231, 589, 1013, 1088, 1222, 1432
BspACI	CCGC	3 cut(s)	140, 766, 1318
BspANI	GGCC	2 cut(s)	387, 1068
BspLI	GGNNCC	3 cut(s)	1161, 1193, 1316
BspMAI	CTGCAG	1 cut(s)	316
BspPI	GGATC	2 cut(s)	597, 1217
BsrDI	GCAATG	1 cut(s)	1327
BsrI	ACTGG	6 cut(s)	855, 1135, 1281, 1316, 1369, 1379
BssECI	CCNNGG	4 cut(s)	205, 260, 831, 938
BssMI	GATC	7 cut(s)	145, 231, 589, 1013, 1088, 1222, 1432
BssT1I	CCWWGG	2 cut(s)	205, 938
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	374, 1177
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstC8I	GCNNGC	5 cut(s)	570, 700, 1010, 1066, 1258
BstDEI	CTNAG	1 cut(s)	402
BstEII	GGTNACC	1 cut(s)	1130
BstF5I	GGATG	3 cut(s)	24, 363, 897
BstKTI	GATC	7 cut(s)	148, 234, 592, 1016, 1091, 1225, 1435
BstMBI	GATC	7 cut(s)	145, 231, 589, 1013, 1088, 1222, 1432
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 320, 553, 1349
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	4 cut(s)	556, 724, 1012, 1301
BstPI	GGTNACC	1 cut(s)	1130
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	885
BstX2I	RGATCY	2 cut(s)	589, 1222
BstYI	RGATCY	2 cut(s)	589, 1222
BsuI	GTATCC	2 cut(s)	132, 353
BsuRI	GGCC	2 cut(s)	387, 1068
BtrI	CACGTC	1 cut(s)	827
BtsCI	GGATG	3 cut(s)	24, 363, 897
BtsIMutI	CAGTG	3 cut(s)	370, 1274, 1309
Cac8I	GCNNGC	5 cut(s)	570, 700, 1010, 1066, 1258
Cfr13I	GGNCC	1 cut(s)	114
CpoI	CGGWCCG	1 cut(s)	114
CseI	GACGC	1 cut(s)	1358
Csp6I	GTAC	6 cut(s)	275, 301, 406, 669, 1138, 1372
CspCI	CAANNNNNGTGG	2 cut(s)	875, 910
CspI	CGGWCCG	1 cut(s)	114
CviQI	GTAC	6 cut(s)	275, 301, 406, 669, 1138, 1372
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	7 cut(s)	147, 233, 591, 1015, 1090, 1224, 1434
DpnII	GATC	7 cut(s)	145, 231, 589, 1013, 1088, 1222, 1432
EaeI	YGGCCR	1 cut(s)	1066
Eco130I	CCWWGG	2 cut(s)	205, 938
Eco32I	GATATC	1 cut(s)	611
Eco47I	GGWCC	1 cut(s)	114
Eco57I	CTGAAG	2 cut(s)	746, 1424
Eco88I	CYCGRG	1 cut(s)	438
Eco91I	GGTNACC	1 cut(s)	1130
EcoO65I	GGTNACC	1 cut(s)	1130
EcoRII	CCWGG	1 cut(s)	259
EcoRV	GATATC	1 cut(s)	611
EcoT14I	CCWWGG	2 cut(s)	205, 938
EcoT22I	ATGCAT	2 cut(s)	960, 1081
ErhI	CCWWGG	2 cut(s)	205, 938
FalI	AAGNNNNNCTT	2 cut(s)	1188, 1220
FaqI	GGGAC	1 cut(s)	277
FauNDI	CATATG	1 cut(s)	1081
FbaI	TGATCA	2 cut(s)	145, 231
FblI	GTMKAC	1 cut(s)	1167
Fnu4HI	GCNGC	2 cut(s)	899, 1443
FokI	GGATG	3 cut(s)	31, 350, 904
Fsp4HI	GCNGC	2 cut(s)	899, 1443
FspBI	CTAG	4 cut(s)	15, 99, 389, 1419
GluI	GCNGC	2 cut(s)	899, 1443
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	1298
HaeIII	GGCC	2 cut(s)	387, 1068
HapII	CCGG	1 cut(s)	1291
HgaI	GACGC	1 cut(s)	1358
HincII	GTYRAC	2 cut(s)	537, 922
HindII	GTYRAC	2 cut(s)	537, 922
HinfI	GANTC	5 cut(s)	23, 431, 641, 1098, 1282
HpaII	CCGG	1 cut(s)	1291
HphI	GGTGA	3 cut(s)	193, 221, 518
Hpy166II	GTNNAC	3 cut(s)	537, 922, 1168
Hpy188I	TCNGA	6 cut(s)	118, 292, 519, 824, 1250, 1389
Hpy188III	TCNNGA	6 cut(s)	357, 438, 440, 476, 542, 707
Hpy8I	GTNNAC	3 cut(s)	537, 922, 1168
HpyAV	CCTTC	5 cut(s)	349, 992, 1193, 1206, 1386
HpyCH4III	ACNGT	2 cut(s)	374, 1177
HpyCH4IV	ACGT	2 cut(s)	826, 1119
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 320, 553, 1349
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	2 cut(s)	826, 1119
Ksp22I	TGATCA	2 cut(s)	145, 231
Kzo9I	GATC	7 cut(s)	145, 231, 589, 1013, 1088, 1222, 1432
LmnI	GCTCC	3 cut(s)	187, 487, 1165
Lsp1109I	GCAGC	1 cut(s)	885
LweI	GCATC	2 cut(s)	469, 973
MaeI	CTAG	4 cut(s)	15, 99, 389, 1419
MaeII	ACGT	2 cut(s)	826, 1119
MaeIII	GTNAC	5 cut(s)	209, 244, 739, 1120, 1130
MalI	GATC	7 cut(s)	147, 233, 591, 1015, 1090, 1224, 1434
MboI	GATC	7 cut(s)	145, 231, 589, 1013, 1088, 1222, 1432
MboII	GAAGA	6 cut(s)	307, 426, 752, 917, 1345, 1417
MflI	RGATCY	2 cut(s)	589, 1222
MlsI	TGGCCA	1 cut(s)	1068
MluCI	AATT	6 cut(s)	38, 417, 491, 498, 711, 908
MluNI	TGGCCA	1 cut(s)	1068
MmeI	TCCRAC	1 cut(s)	1159
MnlI	CCTC	8 cut(s)	310, 471, 557, 799, 816, 841, 894, 1181
Mox20I	TGGCCA	1 cut(s)	1068
Mph1103I	ATGCAT	2 cut(s)	960, 1081
MscI	TGGCCA	1 cut(s)	1068
MseI	TTAA	2 cut(s)	381, 525
MslI	CAYNNNNRTG	4 cut(s)	375, 381, 1074, 1080
Msp20I	TGGCCA	1 cut(s)	1068
MspA1I	CMGCKG	3 cut(s)	51, 251, 766
MspI	CCGG	1 cut(s)	1291
MspR9I	CCNGG	1 cut(s)	261
Mva1269I	GAATGC	3 cut(s)	91, 1244, 1267
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	4 cut(s)	11, 320, 553, 1349
NdeI	CATATG	1 cut(s)	1081
NdeII	GATC	7 cut(s)	145, 231, 589, 1013, 1088, 1222, 1432
NlaIV	GGNNCC	3 cut(s)	1161, 1193, 1316
NmeAIII	GCCGAG	1 cut(s)	812
NmuCI	GTSAC	1 cut(s)	209
NsiI	ATGCAT	2 cut(s)	960, 1081
NspI	RCATGY	4 cut(s)	556, 724, 1012, 1301
PaeI	GCATGC	1 cut(s)	1012
PaeR7I	CTCGAG	1 cut(s)	438
PctI	GAATGC	3 cut(s)	91, 1244, 1267
PfeI	GAWTC	5 cut(s)	23, 431, 641, 1098, 1282
PkrI	GCNGC	2 cut(s)	900, 1444
PsiI	TTATAA	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	259
PspEI	GGTNACC	1 cut(s)	1130
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	3 cut(s)	1161, 1193, 1316
PspPI	GGNCC	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	316
PsuI	RGATCY	2 cut(s)	589, 1222
PvuII	CAGCTG	2 cut(s)	51, 251
RsaI	GTAC	6 cut(s)	276, 302, 407, 670, 1139, 1373
RsaNI	GTAC	6 cut(s)	275, 301, 406, 669, 1138, 1372
RseI	CAYNNNNRTG	4 cut(s)	375, 381, 1074, 1080
Rsr2I	CGGWCCG	1 cut(s)	114
RsrII	CGGWCCG	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	381, 525
SatI	GCNGC	2 cut(s)	899, 1443
Sau3AI	GATC	7 cut(s)	145, 231, 589, 1013, 1088, 1222, 1432
Sau96I	GGNCC	1 cut(s)	114
ScaI	AGTACT	3 cut(s)	407, 670, 1373
ScrFI	CCNGG	1 cut(s)	261
SfaNI	GCATC	2 cut(s)	469, 973
SfcI	CTRYAG	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	4 cut(s)	375, 381, 1074, 1080
SmlI	CTYRAG	2 cut(s)	438, 542
SmoI	CTYRAG	2 cut(s)	438, 542
SpeI	ACTAGT	1 cut(s)	98
SphI	GCATGC	1 cut(s)	1012
Sse9I	AATT	6 cut(s)	38, 417, 491, 498, 711, 908
SsiI	CCGC	3 cut(s)	140, 766, 1318
SspI	AATATT	1 cut(s)	1238
SspMI	CTAG	4 cut(s)	15, 99, 389, 1419
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	2 cut(s)	205, 938
TaaI	ACNGT	2 cut(s)	374, 1177
TaiI	ACGT	2 cut(s)	829, 1122
TaqI	TCGA	2 cut(s)	439, 1435
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	6 cut(s)	38, 417, 491, 498, 711, 908
TatI	WGTACW	4 cut(s)	274, 405, 668, 1371
TfiI	GAWTC	5 cut(s)	23, 431, 641, 1098, 1282
Tru1I	TTAA	2 cut(s)	381, 525
Tru9I	TTAA	2 cut(s)	381, 525
TscAI	CASTG	3 cut(s)	377, 1281, 1316
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	2 cut(s)	898, 1442
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	5 cut(s)	360, 633, 1028, 1098, 1274
TspRI	CASTG	3 cut(s)	377, 1281, 1316
VpaK11BI	GGWCC	1 cut(s)	114
XapI	RAATTY	1 cut(s)	491
XceI	RCATGY	4 cut(s)	556, 724, 1012, 1301
XhoI	CTCGAG	1 cut(s)	438
XmiI	GTMKAC	1 cut(s)	1167
XspI	CTAG	4 cut(s)	15, 99, 389, 1419
ZrmI	AGTACT	3 cut(s)	407, 670, 1373
Zsp2I	ATGCAT	2 cut(s)	960, 1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.