AT5G37670

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014230
Physical Location & Seq
Forward (+)
14968758 .. 14969591
834 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37670.1

Sequence Viewer

Length: 414 bp
ATGGCAGACAGAGGAATATTCTTGTATCCATTTAGAAGATTCCAAGAATGGTCAAGATCAACGGCTCTGATTGATTGGATGGAATCAAACAACTCTCATATCTTCAAGATCAACGTTCCTGGTTACAACAAAGAAGACATCAAAGTACAGATTGAAGAAGGGAATGTTTTGAGTATAAGAGGAGAAGGAATAAAGGAAGAGAAGAAGGAGAATTTGGTGTGGCACGTGGCGGAGAGAGAAGCTTTTTCCGGTGGTGGAAGTGAGTTTTTGCGGCGGATTGAGTTGCCGGAGAATGTGAAAGTTGATCAAGTTAAAGCTTACGTGGAGAATGGTGTTCTTACAGTTGTTGTTCCTAAGGACACTTCATCGAAATCGTCTAAAGTTAGGAATGTTAATATTACTAGCAAGCTTTGA

Protein Analysis

137

Amino Acids

15.7

Weight (kDa)

7.94

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 25 - 134 2.5e-21 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014230)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37670
fragaria_vesca FvH4_1g07080
malus_domestica MD09G1271100.v1.1 MD17G1269200.v1.1
prunus_persica Prupe.3G017400_v2.0.a1
pyrus_communis pycom09g18210 pycom17g26790
rosa_chinensis RchiOBHm_Chr3g0491101
rosa_laevigata RLG00000022863
rosa_multiflora Rmu_sc0005038.1_g000022
rosa_roxburghii Rroxscaffold_6G00393200
rosa_rugosa Rorug03G0246100
rosa_samantha Rh3AG296300 Rh3BG332300 Rh3CG329600 Rh3DG330100
rosa_wichuraiana Rw3G026150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 230, 271, 274
AclI AACGTT 1 cut(s) 114
AcsI RAATTY 1 cut(s) 211
AcvI CACGTG 1 cut(s) 226
AfaI GTAC 1 cut(s) 147
AgsI TTSAA 2 cut(s) 106, 155
AjnI CCWGG 1 cut(s) 118
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 3 cut(s) 242, 317, 409
AluI AGCT 3 cut(s) 242, 317, 409
ApoI RAATTY 1 cut(s) 211
AxyI CCTNAGG 1 cut(s) 354
BbrPI CACGTG 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 141
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 120
BciVI GTATCC 1 cut(s) 36
BclI TGATCA 1 cut(s) 304
BfaI CTAG 1 cut(s) 402
BfuI GTATCC 1 cut(s) 36
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 141
BsaAI YACGTR 2 cut(s) 226, 322
BsaWI WCCGGW 1 cut(s) 248
Bse21I CCTNAGG 1 cut(s) 354
BseBI CCWGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 195
BsiSI CCGG 2 cut(s) 249, 287
Bsp143I GATC 3 cut(s) 56, 108, 304
BspACI CCGC 3 cut(s) 230, 271, 274
BssMI GATC 3 cut(s) 56, 108, 304
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 192
BstBAI YACGTR 2 cut(s) 226, 322
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 3 cut(s) 59, 111, 307
BstMBI GATC 3 cut(s) 56, 108, 304
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 141
Bsu36I CCTNAGG 1 cut(s) 354
BsuI GTATCC 1 cut(s) 36
BtsCI GGATG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 146
CviJI RGCY 4 cut(s) 65, 242, 317, 409
CviKI_1 RGCY 4 cut(s) 65, 242, 317, 409
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 1 cut(s) 354
DpnI GATC 3 cut(s) 58, 110, 306
DpnII GATC 3 cut(s) 56, 108, 304
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EciI GGCGGA 2 cut(s) 245, 289
Eco72I CACGTG 1 cut(s) 226
Eco81I CCTNAGG 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 118
FaiI YATR 2 cut(s) 99, 176
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 1 cut(s) 402
GluI GCNGC 1 cut(s) 272
HapII CCGG 2 cut(s) 249, 287
HindIII AAGCTT 3 cut(s) 240, 315, 407
HinfI GANTC 2 cut(s) 39, 83
HpaII CCGG 2 cut(s) 249, 287
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 2 cut(s) 54, 106
HpyAV CCTTC 3 cut(s) 152, 179, 199
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 3 cut(s) 114, 225, 321
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 3 cut(s) 114, 225, 321
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 56, 108, 304
LpnPI CCDG 4 cut(s) 105, 132, 262, 300
MaeI CTAG 1 cut(s) 402
MaeII ACGT 3 cut(s) 114, 225, 321
MaeIII GTNAC 1 cut(s) 122
MalI GATC 3 cut(s) 58, 110, 306
MboI GATC 3 cut(s) 56, 108, 304
MboII GAAGA 6 cut(s) 48, 94, 146, 167, 209, 214
MluCI AATT 1 cut(s) 211
MnlI CCTC 2 cut(s) 5, 173
MseI TTAA 2 cut(s) 312, 393
MspI CCGG 2 cut(s) 249, 287
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
NdeII GATC 3 cut(s) 56, 108, 304
PfeI GAWTC 2 cut(s) 39, 83
PkrI GCNGC 1 cut(s) 273
PmaCI CACGTG 1 cut(s) 226
PmlI CACGTG 1 cut(s) 226
Ppu21I YACGTR 2 cut(s) 226, 322
Psp1406I AACGTT 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 118
PspCI CACGTG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 118
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 312, 393
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 3 cut(s) 56, 108, 304
ScrFI CCNGG 1 cut(s) 120
SetI ASST 6 cut(s) 117, 228, 244, 319, 324, 411
Sse9I AATT 1 cut(s) 211
SsiI CCGC 3 cut(s) 230, 271, 274
SspI AATATT 2 cut(s) 18, 397
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 3 cut(s) 117, 228, 324
TaqI TCGA 1 cut(s) 368
TasI AATT 1 cut(s) 211
TatI WGTACW 1 cut(s) 145
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 2 cut(s) 39, 83
Tru1I TTAA 2 cut(s) 312, 393
Tru9I TTAA 2 cut(s) 312, 393
TspDTI ATGAA 1 cut(s) 354
XapI RAATTY 1 cut(s) 211
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.