Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014230

Physical Location & Seq

Genomic Coordinates Reverse (-)

1245944 .. 1247894

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G017400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCAGCTGATAGCATTTTTGGGTACCCATTGAGGCGCTTCCTGTGGAGCCCTCCGATTTTCCGAGAATGGTCAGGATCAACGGCCCTCATGGACTGGCTTGAATCTCCTAATGCCCACATATTCAAAATCAATGTTCCAGGTTTTAGAAAGGAGGACATAAAAGTGCAGATAGATGAAGGGAACGTTCTGCAGATAAAAGGGGAAGGCGGGAAAGAGGAGGCTTACCATGCAAAAGACACAGTTTGGCATGTGGCAGAGAGAGGGACGGGGAAAGGAGACTTTTCTCGGGAAATTGAATTGCCGGAAAACGTGAAGGTGGATCAGATAAAAGCTCAAGTGGAGAATGGAGTTCTCACCATTGTTGTCCCTAAAGATGCAACCCCCAAGCCATCTAAAGTGCGAAACATCAACATCACAAGCAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0031907 GO:0031974 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

144

Amino Acids

16.08

Weight (kDa)

6.84

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37670
fragaria_vesca	FvH4_1g07080
malus_domestica	MD09G1271100.v1.1 MD17G1269200.v1.1
prunus_persica	Prupe.3G017400_v2.0.a1
pyrus_communis	pycom09g18210 pycom17g26790
rosa_chinensis	RchiOBHm_Chr3g0491101
rosa_laevigata	RLG00000022863
rosa_multiflora	Rmu_sc0005038.1_g000022
rosa_roxburghii	Rroxscaffold_6G00393200
rosa_rugosa	Rorug03G0246100
rosa_samantha	Rh3AG296300 Rh3BG332300 Rh3CG329600 Rh3DG330100
rosa_wichuraiana	Rw3G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	24
AciI	CCGC	1 cut(s)	210
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	2 cut(s)	85, 330
AfaI	GTAC	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	104, 127, 299
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	3 cut(s)	8, 335, 427
AluI	AGCT	3 cut(s)	8, 335, 427
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	85, 330
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	5
Asp718I	GGTACC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	191
BfoI	RGCGCY	1 cut(s)	40
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	141
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	26, 50
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	2 cut(s)	280, 353
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	2 cut(s)	280, 353
BsnI	GGCC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	77, 322
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	86
BspLI	GGNNCC	2 cut(s)	26, 50
BspMAI	CTGCAG	1 cut(s)	195
BspPI	GGATC	2 cut(s)	85, 330
BspT107I	GGYRCC	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	101
BssMI	GATC	2 cut(s)	77, 322
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	425
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	2 cut(s)	80, 325
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	77, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	425
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	3 cut(s)	91, 230, 251
CviJI	RGCY	8 cut(s)	8, 51, 86, 100, 224, 335, 391, 427
CviKI_1	RGCY	8 cut(s)	8, 51, 86, 100, 224, 335, 391, 427
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	2 cut(s)	79, 324
DpnII	GATC	2 cut(s)	77, 322
Eco24I	GRGCYC	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	53
FaeI	CATG	3 cut(s)	94, 233, 254
FaiI	YATR	5 cut(s)	92, 122, 161, 231, 252
FaqI	GGGAC	2 cut(s)	280, 353
FatI	CATG	3 cut(s)	90, 229, 250
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	305
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	94, 233, 254
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	1 cut(s)	349
Hpy188I	TCNGA	3 cut(s)	57, 65, 327
Hpy188III	TCNNGA	2 cut(s)	75, 290
HpyAV	CCTTC	3 cut(s)	173, 200, 310
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	186, 312
HpyCH4V	TGCA	4 cut(s)	169, 193, 233, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpySE526I	ACGT	2 cut(s)	186, 312
Hsp92II	CATG	3 cut(s)	94, 233, 254
HspAI	GCGC	1 cut(s)	37
KpnI	GGTACC	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	77, 322
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	6 cut(s)	56, 60, 82, 126, 153, 318
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	367
MaeII	ACGT	2 cut(s)	186, 312
MalI	GATC	2 cut(s)	79, 324
MboI	GATC	2 cut(s)	77, 322
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	2 cut(s)	294, 299
MnlI	CCTC	7 cut(s)	27, 63, 98, 148, 211, 214, 257
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	2 cut(s)	77, 322
NlaIII	CATG	3 cut(s)	94, 233, 254
NlaIV	GGNNCC	2 cut(s)	26, 50
NspI	RCATGY	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	7
Psp1406I	AACGTT	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	26, 50
PspPI	GGNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	195
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	164
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	77, 322
Sau96I	GGNCC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	7 cut(s)	10, 145, 189, 315, 321, 337, 429
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
Sse9I	AATT	2 cut(s)	294, 299
SsiI	CCGC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	2 cut(s)	189, 315
TasI	AATT	2 cut(s)	294, 299
TfiI	GAWTC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	192
XceI	RCATGY	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.