Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0014230

Physical Location & Seq

Genomic Coordinates Forward (+)

25080653 .. 25081580

Gene Structure 928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g26790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGACTGGCTTGAATCCCCTAATTCCCACATATTCAAGATCAATGTTCCAGGGGAAGGCAGGAAAGAAAGAGAGAAGGCTCATGCAGCAAAAGACACTGTTTGGCACGTCGCGGAGACGCCGGAGAGGGGGACGGGAAAAGGAGACTTTTCCCGGGAAATCGCATTGCCGGAAAATGTGAAAGTCGATCAGATAAAGGCTCAGGTTGAGAATGGTGTTCTCACCCTTGTTGTCCCAAAAGATACGACCCACCAAACCATCCAAAATGCGAAACATCAATATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0031907 GO:0031974 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

96

Amino Acids

10.73

Weight (kDa)

6.58

Isoelectric Point (pI)

20.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37670
fragaria_vesca	FvH4_1g07080
malus_domestica	MD09G1271100.v1.1 MD17G1269200.v1.1
prunus_persica	Prupe.3G017400_v2.0.a1
pyrus_communis	pycom09g18210 pycom17g26790
rosa_chinensis	RchiOBHm_Chr3g0491101
rosa_laevigata	RLG00000022863
rosa_multiflora	Rmu_sc0005038.1_g000022
rosa_roxburghii	Rroxscaffold_6G00393200
rosa_rugosa	Rorug03G0246100
rosa_samantha	Rh3AG296300 Rh3BG332300 Rh3CG329600 Rh3DG330100
rosa_wichuraiana	Rw3G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	113
AciI	CCGC	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	56, 128
AgsI	TTSAA	2 cut(s)	14, 37
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	49
Alw26I	GTCTC	2 cut(s)	110, 138
Ama87I	CYCGRG	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	86
AsuC2I	CCSGG	2 cut(s)	154, 155
AsuHPI	GGTGA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	51
BcnI	CCSGG	2 cut(s)	154, 155
BcoDI	GTCTC	2 cut(s)	110, 138
BfaI	CTAG	1 cut(s)	286
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	3 cut(s)	51, 154, 155
BmeT110I	CYCGRG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	109
BmrFI	CCNGG	3 cut(s)	51, 154, 155
Bpu10I	CCTNAGC	1 cut(s)	201
BpuMI	CCSGG	2 cut(s)	154, 155
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	50, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 128
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	50, 153
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	56, 128
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	3 cut(s)	122, 154, 170
BslFI	GGGAC	2 cut(s)	145, 218
BslI	CCNNNNNNNGG	2 cut(s)	56, 128
BsmAI	GTCTC	2 cut(s)	110, 138
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	145, 218
BsoBI	CYCGRG	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	39, 187
BspACI	CCGC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	50, 153
BssMI	GATC	2 cut(s)	39, 187
BssNI	GRCGYC	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	100
BstACI	GRCGYC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	2 cut(s)	42, 190
BstMAI	GTCTC	2 cut(s)	110, 138
BstMBI	GATC	2 cut(s)	39, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	49, 152, 153
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	96
Cfr9I	CCCGGG	1 cut(s)	153
CseI	GACGC	1 cut(s)	127
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	3 cut(s)	10, 80, 200
CviKI_1	RGCY	3 cut(s)	10, 80, 200
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	2 cut(s)	41, 189
DpnII	GATC	2 cut(s)	39, 187
Eco88I	CYCGRG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	1 cut(s)	86
FaiI	YATR	2 cut(s)	32, 84
FaqI	GGGAC	2 cut(s)	145, 218
FatI	CATG	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	286
GluI	GCNGC	1 cut(s)	87
HapII	CCGG	3 cut(s)	122, 154, 170
HgaI	GACGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	86
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	3 cut(s)	122, 154, 170
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	50, 70
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	86
Kzo9I	GATC	2 cut(s)	39, 187
LpnPI	CCDG	7 cut(s)	36, 46, 63, 135, 167, 183, 188
Lsp1109I	GCAGC	1 cut(s)	98
MaeI	CTAG	1 cut(s)	286
MaeII	ACGT	1 cut(s)	108
MalI	GATC	2 cut(s)	41, 189
MboI	GATC	2 cut(s)	39, 187
MluCI	AATT	1 cut(s)	22
MnlI	CCTC	1 cut(s)	120
MspI	CCGG	3 cut(s)	122, 154, 170
MspR9I	CCNGG	3 cut(s)	51, 154, 155
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	2 cut(s)	154, 155
NdeII	GATC	2 cut(s)	39, 187
NlaIII	CATG	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	39, 187
ScrFI	CCNGG	3 cut(s)	51, 154, 155
SetI	ASST	2 cut(s)	111, 207
SmaI	CCCGGG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	286
StyD4I	CCNGG	3 cut(s)	49, 152, 153
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	14
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	1 cut(s)	86
TspMI	CCCGGG	1 cut(s)	153
TspRI	CASTG	1 cut(s)	103
XmaI	CCCGGG	1 cut(s)	153
XspI	CTAG	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.