Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0014230

Physical Location & Seq

Genomic Coordinates Forward (+)

23040225 .. 23041751

Gene Structure 1527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0246100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGGGTTTTAAAAATATCTATGCTTACAATCTAGCAATGCTTGCAAAGCAGGGATGGCGAATTGTTACCAATCCTAACTCTTTAATAGCAAAATTATACAAAGCTAGATATTTCCCATATGGTACTTTTTGGAACGCTGAACTTGGAGACTCACCATCCTTTTCTTGGAGAAGTATTCTCAATGGAAGGCCAATCTTAAAAGCAGGGGTACAGTGGAAGATAGGAGATGGAATTCTTGTTAACATATGGGACGATAGATGGATTCCTACTGCTCAACAATATCGGATTTCACGGCCTCCACAAGCTCACTGTGCAAAGGTAGCTGATCTAATTAATCCCCATACTAGAGAATGGATACCTACCACTGTCCAAGCTTTATTTCCTGCTGATATTGCCACAAAAATTCTATGCATCCCGTTGAGTAGACAGGCCAACCAAGATAGACTTGTTTGGAGTTTGGAGAAAAGGGGTTTTTATTCGGTGAAAACAGCTTATTGGATTGCACGGGACCAAGTGCTACAACAAGCTCTAATCTCGACATCTAATGGTAATCCGTATAAGGAGCTGTGGAACAAGATCTGGAAAGCACAAGTCCCAGGGAAGGTCCAAATATGTGTATGGAGAGCTTGCAACAACTTGTTAGCCACAAGAGAAAGACTGCTCACCAAGGGTTACAATGGAGAGACGCGTTGTCTACTTTGTATTCATCCCATTGAAGATAACTCCCATTTGTTCTGTAAGTGTCCCATTGCTAAGCAACTTCTTATAGCTCCACCATTTAACTTGCAGGACAGTTTGCTGCCTAATATCAATTTCAAAGAATGGATGCTAGAACGAGCAATGAGCCTCCAACCACAAATCTTTGCAAAGCTATTGATGATTATCTGGGCCATTTGGAAGAATAGGAACAACATGTTATGGTCTGGCACTCAACAAACTGCTCAAGATTTAATGCTAAGCTGTGTTACTTGGTTGGAGGACTTTCAAAAAGCCAGGCCTGGAAGTCTCAAACCGATGAAACATACCAGGCAGAAATGGGTGCCTGCAACTAATGGTTGTTATAAATTAAACGTGGATGCTGCCTTCATGCATAATCAAAATAATGGTGGAATTGGAGGTGTAATCCGAGATGCTACTGGACAGTTTGTCGCTGCCTTTGCTAGACCAGTTCCATGCACAGCCTCACCAAAACAATGTGAGCTTCTAGCAATCCGAGAAGGAATTGATCTACTGTACTCGCTTCAACTCAATGAAGTCACCATTGAAAGTGACTGTATGGAAGCTATTCAGGAGATACATTGTCCAGACTATGAGCTGTTGGCTAATGGCAGCATTGTAGATGACATCCATCGTACTTGGGGGAAACTGAAAGGAGTGCACTTCGCTTATACTCCTCGATCTTGTAATAGGGTGGCACACCGTTTAGCAGCTATAGGTTTTGAAGCGACCCAGGGTGTTGTCTGGACGAGTCAAGCACCAGAAAGTATTTTCGATGTGCTTGATAAAGATTGTAATCAGCTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0031907 GO:0031974 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

508

Amino Acids

57.8

Weight (kDa)

9.11

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	179 - 254	2.4e-16	zinc-binding in reverse transcriptase
RVT_3	PF13456	357 - 477	3e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37670
fragaria_vesca	FvH4_1g07080
malus_domestica	MD09G1271100.v1.1 MD17G1269200.v1.1
prunus_persica	Prupe.3G017400_v2.0.a1
pyrus_communis	pycom09g18210 pycom17g26790
rosa_chinensis	RchiOBHm_Chr3g0491101
rosa_laevigata	RLG00000022863
rosa_multiflora	Rmu_sc0005038.1_g000022
rosa_roxburghii	Rroxscaffold_6G00393200
rosa_rugosa	Rorug03G0246100
rosa_samantha	Rh3AG296300 Rh3BG332300 Rh3CG329600 Rh3DG330100
rosa_wichuraiana	Rw3G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1062
AccB1I	GGYRCC	1 cut(s)	1039
AccI	GTMKAC	2 cut(s)	424, 694
AccII	CGCG	1 cut(s)	688
AcsI	RAATTY	2 cut(s)	231, 402
AfaI	GTAC	4 cut(s)	124, 210, 1235, 1354
AfiI	CCNNNNNNNGG	2 cut(s)	165, 601
AflIII	ACRYGT	2 cut(s)	686, 912
AgsI	TTSAA	6 cut(s)	716, 817, 986, 1244, 1265, 1442
AhdI	GACNNNNNGTC	2 cut(s)	690, 1145
AjnI	CCWGG	5 cut(s)	595, 992, 997, 1025, 1449
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
Alw21I	GWGCWC	1 cut(s)	1380
Alw26I	GTCTC	3 cut(s)	141, 677, 1010
Alw44I	GTGCAC	1 cut(s)	1376
AoxI	GGCC	5 cut(s)	188, 293, 429, 888, 995
ApaLI	GTGCAC	1 cut(s)	1376
ApeKI	GCWGC	5 cut(s)	799, 1079, 1151, 1329, 1427
ApoI	RAATTY	2 cut(s)	231, 402
AseI	ATTAAT	1 cut(s)	333
Asp700I	GAANNNNTTC	1 cut(s)	1284
AspS9I	GGNCC	3 cut(s)	508, 604, 888
AsuHPI	GGTGA	5 cut(s)	144, 493, 655, 1176, 1249
AvaII	GGWCC	2 cut(s)	508, 604
BaeGI	GKGCMC	1 cut(s)	1380
BanI	GGYRCC	1 cut(s)	1039
Bbv12I	GWGCWC	1 cut(s)	1380
BbvI	GCAGC	5 cut(s)	786, 1066, 1138, 1341, 1439
BccI	CCATC	5 cut(s)	48, 163, 221, 252, 1356
BceAI	ACGGC	1 cut(s)	308
BciT130I	CCWGG	5 cut(s)	597, 994, 999, 1027, 1451
BciVI	GTATCC	1 cut(s)	348
BcoDI	GTCTC	3 cut(s)	141, 677, 1010
BfaI	CTAG	6 cut(s)	32, 105, 345, 830, 1161, 1205
BfmI	CTRYAG	1 cut(s)	1431
BfuI	GTATCC	1 cut(s)	348
BglII	AGATCT	1 cut(s)	576
BisI	GCNGC	5 cut(s)	800, 1080, 1152, 1330, 1428
BlpI	GCTNAGC	2 cut(s)	753, 956
BlsI	GCNGC	5 cut(s)	801, 1081, 1153, 1331, 1429
Bme1390I	CCNGG	5 cut(s)	597, 994, 999, 1027, 1451
Bme18I	GGWCC	2 cut(s)	508, 604
BmeRI	GACNNNNNGTC	2 cut(s)	690, 1145
BmgT120I	GGNCC	3 cut(s)	508, 604, 888
BmiI	GGNNCC	2 cut(s)	509, 1041
BmrFI	CCNGG	5 cut(s)	597, 994, 999, 1027, 1451
BmsI	GCATC	4 cut(s)	420, 816, 1066, 1120
Bpu1102I	GCTNAGC	2 cut(s)	753, 956
BpuEI	CTTGAG	1 cut(s)	927
BsaBI	GATNNNNATC	2 cut(s)	881, 1512
BsaJI	CCNNGG	5 cut(s)	595, 596, 666, 1449, 1450
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 601
Bse1I	ACTGG	2 cut(s)	1141, 1166
Bse3DI	GCAATG	3 cut(s)	42, 747, 846
Bse8I	GATNNNNATC	2 cut(s)	881, 1512
BseBI	CCWGG	5 cut(s)	597, 994, 999, 1027, 1451
BseDI	CCNNGG	5 cut(s)	595, 596, 666, 1449, 1450
BseGI	GGATG	7 cut(s)	59, 155, 411, 706, 831, 1081, 1344
BseJI	GATNNNNATC	2 cut(s)	881, 1512
BseLI	CCNNNNNNNGG	2 cut(s)	165, 601
BseMI	GCAATG	3 cut(s)	42, 747, 846
BseNI	ACTGG	2 cut(s)	1141, 1166
BseRI	GAGGAG	1 cut(s)	1383
BseSI	GKGCMC	1 cut(s)	1380
BseXI	GCAGC	5 cut(s)	786, 1066, 1138, 1341, 1439
Bsh1236I	CGCG	1 cut(s)	688
BshFI	GGCC	5 cut(s)	190, 295, 431, 890, 997
BshNI	GGYRCC	1 cut(s)	1039
BsiHKAI	GWGCWC	1 cut(s)	1380
BslFI	GGGAC	4 cut(s)	263, 521, 578, 729
BslI	CCNNNNNNNGG	2 cut(s)	165, 601
BsmAI	GTCTC	3 cut(s)	141, 677, 1010
BsmBI	CGTCTC	1 cut(s)	677
BsmFI	GGGAC	4 cut(s)	263, 521, 578, 729
BsnI	GGCC	5 cut(s)	190, 295, 431, 890, 997
Bsp1286I	GDGCHC	1 cut(s)	1380
Bsp143I	GATC	4 cut(s)	325, 576, 1225, 1397
Bsp1720I	GCTNAGC	2 cut(s)	753, 956
BspANI	GGCC	5 cut(s)	190, 295, 431, 890, 997
BspFNI	CGCG	1 cut(s)	688
BspLI	GGNNCC	2 cut(s)	509, 1041
BspT107I	GGYRCC	1 cut(s)	1039
BsrDI	GCAATG	3 cut(s)	42, 747, 846
BsrI	ACTGG	2 cut(s)	1141, 1166
BssECI	CCNNGG	5 cut(s)	595, 596, 666, 1449, 1450
BssMI	GATC	4 cut(s)	325, 576, 1225, 1397
BssT1I	CCWWGG	1 cut(s)	666
Bst2UI	CCWGG	5 cut(s)	597, 994, 999, 1027, 1451
Bst4CI	ACNGT	8 cut(s)	213, 311, 367, 794, 1143, 1233, 1274, 1421
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	42, 628, 1044
BstDEI	CTNAG	2 cut(s)	753, 956
BstF5I	GGATG	7 cut(s)	59, 155, 411, 706, 831, 1081, 1344
BstFNI	CGCG	1 cut(s)	688
BstKTI	GATC	4 cut(s)	328, 579, 1228, 1400
BstMAI	GTCTC	3 cut(s)	141, 677, 1010
BstMBI	GATC	4 cut(s)	325, 576, 1225, 1397
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 46, 55, 311, 320, 392, 1157
BstNI	CCWGG	5 cut(s)	597, 994, 999, 1027, 1451
BstNSI	RCATGY	1 cut(s)	916
BstSCI	CCNGG	5 cut(s)	595, 992, 997, 1025, 1449
BstSFI	CTRYAG	1 cut(s)	1431
BstSLI	GKGCMC	1 cut(s)	1380
BstUI	CGCG	1 cut(s)	688
BstV1I	GCAGC	5 cut(s)	786, 1066, 1138, 1341, 1439
BstX2I	RGATCY	1 cut(s)	576
BstYI	RGATCY	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	5 cut(s)	190, 295, 431, 890, 997
BtsCI	GGATG	7 cut(s)	59, 155, 411, 706, 831, 1081, 1344
BtsIMutI	CAGTG	3 cut(s)	218, 307, 363
Cac8I	GCNNGC	3 cut(s)	42, 628, 1044
Cfr13I	GGNCC	3 cut(s)	508, 604, 888
CseI	GACGC	1 cut(s)	694
Csp6I	GTAC	4 cut(s)	123, 209, 1234, 1353
CviAII	CATG	3 cut(s)	913, 1087, 1173
CviQI	GTAC	4 cut(s)	123, 209, 1234, 1353
DdeI	CTNAG	2 cut(s)	753, 956
DpnI	GATC	4 cut(s)	327, 578, 1227, 1399
DpnII	GATC	4 cut(s)	325, 576, 1225, 1397
DraI	TTTAAA	1 cut(s)	10
DriI	GACNNNNNGTC	2 cut(s)	690, 1145
Eam1105I	GACNNNNNGTC	2 cut(s)	690, 1145
Eco130I	CCWWGG	1 cut(s)	666
Eco147I	AGGCCT	1 cut(s)	997
Eco47I	GGWCC	2 cut(s)	508, 604
EcoRI	GAATTC	1 cut(s)	231
EcoRII	CCWGG	5 cut(s)	595, 992, 997, 1025, 1449
EcoT14I	CCWWGG	1 cut(s)	666
EcoT22I	ATGCAT	2 cut(s)	413, 1092
ErhI	CCWWGG	1 cut(s)	666
Esp3I	CGTCTC	1 cut(s)	677
FaeI	CATG	3 cut(s)	916, 1090, 1176
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	4 cut(s)	263, 521, 578, 729
FatI	CATG	3 cut(s)	912, 1086, 1172
FauNDI	CATATG	2 cut(s)	118, 245
FblI	GTMKAC	2 cut(s)	424, 694
Fnu4HI	GCNGC	5 cut(s)	800, 1080, 1152, 1330, 1428
FokI	GGATG	7 cut(s)	66, 142, 398, 693, 838, 1088, 1331
Fsp4HI	GCNGC	5 cut(s)	800, 1080, 1152, 1330, 1428
FspBI	CTAG	6 cut(s)	32, 105, 345, 830, 1161, 1205
GluI	GCNGC	5 cut(s)	800, 1080, 1152, 1330, 1428
HaeIII	GGCC	5 cut(s)	190, 295, 431, 890, 997
HgaI	GACGC	1 cut(s)	694
Hin1II	CATG	3 cut(s)	916, 1090, 1176
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	3 cut(s)	149, 262, 1468
HpaI	GTTAAC	1 cut(s)	241
HphI	GGTGA	5 cut(s)	144, 493, 655, 1176, 1249
Hpy166II	GTNNAC	4 cut(s)	241, 425, 695, 1378
Hpy188I	TCNGA	3 cut(s)	285, 1127, 1214
Hpy188III	TCNNGA	6 cut(s)	535, 580, 944, 1289, 1304, 1462
Hpy8I	GTNNAC	4 cut(s)	241, 425, 695, 1378
HpyAV	CCTTC	4 cut(s)	180, 595, 1093, 1211
HpyCH4III	ACNGT	8 cut(s)	213, 311, 367, 794, 1143, 1233, 1274, 1421
HpyCH4IV	ACGT	1 cut(s)	1071
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 46, 55, 311, 320, 392, 1157
HpyF3I	CTNAG	2 cut(s)	753, 956
HpySE526I	ACGT	1 cut(s)	1071
Hsp92II	CATG	3 cut(s)	916, 1090, 1176
KspAI	GTTAAC	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	325, 576, 1225, 1397
LmnI	GCTCC	2 cut(s)	562, 775
Lsp1109I	GCAGC	5 cut(s)	786, 1066, 1138, 1341, 1439
LweI	GCATC	4 cut(s)	420, 816, 1066, 1120
MaeI	CTAG	6 cut(s)	32, 105, 345, 830, 1161, 1205
MaeII	ACGT	1 cut(s)	1071
MaeIII	GTNAC	5 cut(s)	64, 671, 964, 1255, 1268
MalI	GATC	4 cut(s)	327, 578, 1227, 1399
MboI	GATC	4 cut(s)	325, 576, 1225, 1397
MboII	GAAGA	3 cut(s)	229, 728, 910
MflI	RGATCY	1 cut(s)	576
MhlI	GDGCHC	1 cut(s)	1380
MluCI	AATT	9 cut(s)	60, 92, 231, 330, 402, 811, 1064, 1110, 1221
MluI	ACGCGT	1 cut(s)	686
MlyI	GAGTC	2 cut(s)	143, 1477
MmeI	TCCRAC	2 cut(s)	874, 954
MnlI	CCTC	6 cut(s)	306, 857, 970, 1109, 1192, 1404
Mph1103I	ATGCAT	2 cut(s)	413, 1092
MroXI	GAANNNNTTC	1 cut(s)	1284
MseI	TTAA	8 cut(s)	9, 83, 197, 240, 333, 780, 950, 1067
MspR9I	CCNGG	5 cut(s)	597, 994, 999, 1027, 1451
MvaI	CCWGG	5 cut(s)	597, 994, 999, 1027, 1451
MvnI	CGCG	1 cut(s)	688
MwoI	GCNNNNNNNGC	7 cut(s)	41, 46, 55, 311, 320, 392, 1157
NdeI	CATATG	2 cut(s)	118, 245
NdeII	GATC	4 cut(s)	325, 576, 1225, 1397
NlaIII	CATG	3 cut(s)	916, 1090, 1176
NlaIV	GGNNCC	2 cut(s)	509, 1041
NmuCI	GTSAC	2 cut(s)	1255, 1268
NsiI	ATGCAT	2 cut(s)	413, 1092
NspI	RCATGY	1 cut(s)	916
PasI	CCCWGGG	2 cut(s)	596, 1450
PceI	AGGCCT	1 cut(s)	997
PciI	ACATGT	1 cut(s)	912
PdmI	GAANNNNTTC	1 cut(s)	1284
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	5 cut(s)	801, 1081, 1153, 1331, 1429
PleI	GAGTC	2 cut(s)	143, 1476
PpsI	GAGTC	2 cut(s)	143, 1476
PscI	ACATGT	1 cut(s)	912
PshBI	ATTAAT	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	1062
Psp6I	CCWGG	5 cut(s)	595, 992, 997, 1025, 1449
PspGI	CCWGG	5 cut(s)	595, 992, 997, 1025, 1449
PspN4I	GGNNCC	2 cut(s)	509, 1041
PspPI	GGNCC	3 cut(s)	508, 604, 888
PsuI	RGATCY	1 cut(s)	576
RsaI	GTAC	4 cut(s)	124, 210, 1235, 1354
RsaNI	GTAC	4 cut(s)	123, 209, 1234, 1353
SaqAI	TTAA	8 cut(s)	9, 83, 197, 240, 333, 780, 950, 1067
SatI	GCNGC	5 cut(s)	800, 1080, 1152, 1330, 1428
Sau3AI	GATC	4 cut(s)	325, 576, 1225, 1397
Sau96I	GGNCC	3 cut(s)	508, 604, 888
SchI	GAGTC	2 cut(s)	143, 1477
ScrFI	CCNGG	5 cut(s)	597, 994, 999, 1027, 1451
SduI	GDGCHC	1 cut(s)	1380
SfaNI	GCATC	4 cut(s)	420, 816, 1066, 1120
SfcI	CTRYAG	1 cut(s)	1431
SinI	GGWCC	2 cut(s)	508, 604
SmlI	CTYRAG	1 cut(s)	942
SmoI	CTYRAG	1 cut(s)	942
Sse9I	AATT	9 cut(s)	60, 92, 231, 330, 402, 811, 1064, 1110, 1221
SseBI	AGGCCT	1 cut(s)	997
SspMI	CTAG	6 cut(s)	32, 105, 345, 830, 1161, 1205
StuI	AGGCCT	1 cut(s)	997
StyD4I	CCNGG	5 cut(s)	595, 992, 997, 1025, 1449
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	8 cut(s)	213, 311, 367, 794, 1143, 1233, 1274, 1421
TaiI	ACGT	1 cut(s)	1074
TaqI	TCGA	3 cut(s)	536, 1396, 1491
TasI	AATT	9 cut(s)	60, 92, 231, 330, 402, 811, 1064, 1110, 1221
TatI	WGTACW	1 cut(s)	1233
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	8 cut(s)	9, 83, 197, 240, 333, 780, 950, 1067
Tru9I	TTAA	8 cut(s)	9, 83, 197, 240, 333, 780, 950, 1067
TscAI	CASTG	3 cut(s)	218, 314, 370
TseFI	GTSAC	2 cut(s)	1255, 1268
TseI	GCWGC	5 cut(s)	799, 1079, 1151, 1329, 1427
Tsp45I	GTSAC	2 cut(s)	1255, 1268
TspDTI	ATGAA	4 cut(s)	695, 1031, 1075, 1266
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	3 cut(s)	218, 314, 370
VneI	GTGCAC	1 cut(s)	1376
VpaK11BI	GGWCC	2 cut(s)	508, 604
VspI	ATTAAT	1 cut(s)	333
XapI	RAATTY	2 cut(s)	231, 402
XceI	RCATGY	1 cut(s)	916
XcmI	CCANNNNNNNNNTGG	1 cut(s)	162
XmiI	GTMKAC	2 cut(s)	424, 694
XmnI	GAANNNNTTC	1 cut(s)	1284
XspI	CTAG	6 cut(s)	32, 105, 345, 830, 1161, 1205
Zsp2I	ATGCAT	2 cut(s)	413, 1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.