Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014230

Physical Location & Seq

Genomic Coordinates Reverse (-)

36570210 .. 36576403

Gene Structure 6194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG330100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTGACGGCCTATTTGGGCACCCATTCAGGCGATTCCTCTGGAGTCCTCCAGTTTTCCGAGAGCGCTGGTCCGGTTCTACCGCACTCATGGACTGGCTTGAATCCCCAACTGCCCACATATTCAAATTCAATGTTCCAGGTTTTAGGAAGGAAGAGATAAAGGTGCAGATCGAAGAAGGCAACATTTTGCAGATAAAAGGGGAAGGTGGGAAAGAGGAGGCCAATGGAAAAGACATTGTTTGGCACGTGGCGGAGAGAGGGACGACCGGGAAAGAGTTTTCTCGGGAAATTGAACTGCCGGATAATGTGAAGGTGGATCAGATTAAAGCTCAGGTGGAGAATGGTGTGCTCACCATTCTTGTACCAAAAGATGCTACCCCTAAACCATCCAGAGTGCGAAATATCAATATTACTAGCAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0031907 GO:0031974 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

142

Amino Acids

16.09

Weight (kDa)

8.01

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	32 - 139	3.3e-23	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37670
fragaria_vesca	FvH4_1g07080
malus_domestica	MD09G1271100.v1.1 MD17G1269200.v1.1
prunus_persica	Prupe.3G017400_v2.0.a1
pyrus_communis	pycom09g18210 pycom17g26790
rosa_chinensis	RchiOBHm_Chr3g0491101
rosa_laevigata	RLG00000022863
rosa_multiflora	Rmu_sc0005038.1_g000022
rosa_roxburghii	Rroxscaffold_6G00393200
rosa_rugosa	Rorug03G0246100
rosa_samantha	Rh3AG296300 Rh3BG332300 Rh3CG329600 Rh3DG330100
rosa_wichuraiana	Rw3G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	21
AciI	CCGC	2 cut(s)	84, 254
AclWI	GGATC	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	128
AcvI	CACGTG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	366
AfeI	AGCGCT	1 cut(s)	68
AgsI	TTSAA	4 cut(s)	104, 127, 133, 296
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	2 cut(s)	332, 424
AluI	AGCT	2 cut(s)	332, 424
Alw21I	GWGCWC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	285
Aor51HI	AGCGCT	1 cut(s)	68
AoxI	GGCC	2 cut(s)	10, 222
ApoI	RAATTY	1 cut(s)	128
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	21
BbrPI	CACGTG	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	354
BccI	CCATC	1 cut(s)	397
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	271
BfaI	CTAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	141, 271
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	23
BmrFI	CCNGG	2 cut(s)	141, 271
BmsI	GCATC	1 cut(s)	364
BpmI	CTGGAG	2 cut(s)	36, 64
Bpu10I	CCTNAGC	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	271
BsaAI	YACGTR	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	53, 101
BseBI	CCWGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	389
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	2 cut(s)	53, 101
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	2 cut(s)	12, 224
BshNI	GGYRCC	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	75, 270, 302
BslFI	GGGAC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	12, 224
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	24, 354
Bsp143I	GATC	2 cut(s)	171, 319
BspACI	CCGC	2 cut(s)	84, 254
BspANI	GGCC	2 cut(s)	12, 224
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	53, 101
BssMI	GATC	2 cut(s)	171, 319
Bst2UI	CCWGG	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	389
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	174, 322
BstMBI	GATC	2 cut(s)	171, 319
BstMCI	CGRYCG	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	139, 269
BstSLI	GKGCMC	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	12, 224
BtsCI	GGATG	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	422
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	6 cut(s)	5, 12, 100, 224, 332, 424
CviKI_1	RGCY	6 cut(s)	5, 12, 100, 224, 332, 424
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	2 cut(s)	173, 321
DpnII	GATC	2 cut(s)	171, 319
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	72
Eco47III	AGCGCT	1 cut(s)	68
Eco72I	CACGTG	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	139
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	92, 122
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	1 cut(s)	90
FokI	GGATG	1 cut(s)	376
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	1 cut(s)	68
GsuI	CTGGAG	2 cut(s)	36, 64
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	12, 224
HapII	CCGG	3 cut(s)	75, 270, 302
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	36, 46, 104
HpaII	CCGG	3 cut(s)	75, 270, 302
HphI	GGTGA	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	62, 324
Hpy188III	TCNNGA	3 cut(s)	43, 287, 393
HpyAV	CCTTC	4 cut(s)	145, 173, 200, 307
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	169, 193
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	171, 319
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	1 cut(s)	249
MalI	GATC	2 cut(s)	173, 321
MboI	GATC	2 cut(s)	171, 319
MboII	GAAGA	2 cut(s)	167, 188
MhlI	GDGCHC	2 cut(s)	24, 354
MluCI	AATT	2 cut(s)	128, 291
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	50, 60, 211, 214, 254
MseI	TTAA	1 cut(s)	327
MspI	CCGG	3 cut(s)	75, 270, 302
MspR9I	CCNGG	2 cut(s)	141, 271
MvaI	CCWGG	1 cut(s)	141
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	2 cut(s)	171, 319
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	36, 104
PleI	GAGTC	1 cut(s)	54
PmaCI	CACGTG	1 cut(s)	250
PmlI	CACGTG	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	54
Ppu21I	YACGTR	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	139
PspCI	CACGTG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	23
PspPI	GGNCC	1 cut(s)	72
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	2 cut(s)	171, 319
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	141, 271
SduI	GDGCHC	2 cut(s)	24, 354
SetI	ASST	8 cut(s)	145, 168, 211, 252, 318, 334, 339, 426
SfaNI	GCATC	1 cut(s)	364
SinI	GGWCC	1 cut(s)	72
Sse9I	AATT	2 cut(s)	128, 291
SsiI	CCGC	2 cut(s)	84, 254
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	2 cut(s)	139, 269
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	174
TasI	AATT	2 cut(s)	128, 291
TfiI	GAWTC	2 cut(s)	36, 104
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.