AT5G37840

Plastid movement impaired 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015869
Physical Location & Seq
Reverse (-)
15062008 .. 15063402
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37840.1

Sequence Viewer

Length: 645 bp
ATGGGGAACACTATAATGGTGAGGAGAAACAAGGTGAAAGTTATGAAGATCGACGGCGATATTTTCCGGCTCAAAACTCCGGTGACGGCGAGTGACGCCACGAAAGAGTATCCCGGATTCGTGCTGTTAGACTCCGAGACCGTGAAACGATTAGGAGTTCGCGCCAAACCTCTAGAGCCGAATCAAATATTAAAGCCTAATCACACATATTTTTTGGTGGACCTTCCACCGGTAGATAAGAGGAATAAGCTTCCATACCGGAGAGTTATGTCCGGTAATATACATGTTGGCGCAAAGGAGCGTTTAGAGATGTTAATGCTTTCAAGGAGAACGGTTTCTGATGTTGGTGCAGCAAGATCTGACGTAGTAGGAGATGGGCCTGAGCTTGGACATACGAGGGTGAGGTTAAGGCTGCCTAGGTCTCAGATAACAAAGTTAATGGAAGAGAGCCATGATGCTTCGGAAGTGGCAGCGAAGATTATCAGTGCTTATATGGAGAGTTCCGGTGGGATACAAGGCGGTAGGGATAACGATGGCCTTCGCCAGAGACTTGGAATTGCGGAGATAAACAACCATTACAAAGCACGAGAGAAGCATGTGAGTTTCGCAGAGAAAGGAGGAAGAGGAGAGATCGTTGTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

214

Amino Acids

23.87

Weight (kDa)

9.94

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 166 1.9e-17 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015869)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66480 AT5G37840
malus_domestica MD09G1261400.v1.1
prunus_persica Prupe.3G158800_v2.0.a1
pyrus_communis pycom09g17580
rosa_chinensis RchiOBHm_Chr3g0493541
rosa_laevigata RLG00000022707
rosa_multiflora Rmu_sc0002343.1_g000048
rosa_roxburghii Rroxscaffold_6G00391510
rosa_rugosa Rorug03G0261900
rosa_samantha Rh3AG310900 Rh3BG346900 Rh3CG344800 Rh3DG346200
rosa_wichuraiana Rw3G027330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 162
AciI CCGC 2 cut(s) 519, 560
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 2 cut(s) 229, 386
AflIII ACRYGT 1 cut(s) 283
AgeI ACCGGT 1 cut(s) 229
AgsI TTSAA 1 cut(s) 324
AluBI AGCT 2 cut(s) 250, 385
AluI AGCT 2 cut(s) 250, 385
Alw26I GTCTC 3 cut(s) 131, 426, 541
AoxI GGCC 2 cut(s) 377, 535
ApeKI GCWGC 3 cut(s) 350, 412, 470
AsiGI ACCGGT 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 334
AspA2I CCTAGG 1 cut(s) 416
AspLEI GCGC 2 cut(s) 164, 293
AspS9I GGNCC 2 cut(s) 220, 377
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 4 cut(s) 31, 46, 94, 412
AvaII GGWCC 1 cut(s) 220
AvrII CCTAGG 1 cut(s) 416
BauI CACGAG 1 cut(s) 585
BbvI GCAGC 3 cut(s) 362, 399, 482
BccI CCATC 2 cut(s) 368, 527
BceAI ACGGC 2 cut(s) 70, 102
BciVI GTATCC 2 cut(s) 120, 504
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 3 cut(s) 131, 426, 541
BfaI CTAG 2 cut(s) 173, 417
BfuI GTATCC 2 cut(s) 120, 504
BglII AGATCT 1 cut(s) 356
BisI GCNGC 3 cut(s) 351, 413, 471
BlnI CCTAGG 1 cut(s) 416
BlsI GCNGC 3 cut(s) 352, 414, 472
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 2 cut(s) 220, 377
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 445
Bpu10I CCTNAGC 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 2 cut(s) 131, 426
BsaJI CCNNGG 1 cut(s) 416
BsaWI WCCGGW 5 cut(s) 79, 229, 258, 272, 503
BsaXI ACNNNNNCTCC 1 cut(s) 618
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 386
Bse118I RCCGGY 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 416
BseLI CCNNNNNNNGG 2 cut(s) 229, 386
BseMII CTCAG 2 cut(s) 372, 437
BseRI GAGGAG 2 cut(s) 37, 639
BseXI GCAGC 3 cut(s) 362, 399, 482
BsgI GTGCAG 1 cut(s) 369
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 379, 537
BshTI ACCGGT 1 cut(s) 229
BsiSI CCGG 7 cut(s) 67, 80, 114, 230, 259, 273, 504
BslI CCNNNNNNNGG 2 cut(s) 229, 386
BsmAI GTCTC 3 cut(s) 131, 426, 541
BsnI GGCC 2 cut(s) 379, 537
Bso31I GGTCTC 2 cut(s) 131, 426
Bsp143I GATC 3 cut(s) 48, 356, 630
BspACI CCGC 2 cut(s) 519, 560
BspANI GGCC 2 cut(s) 379, 537
BspCNI CTCAG 2 cut(s) 373, 436
BspFNI CGCG 1 cut(s) 162
BspTNI GGTCTC 2 cut(s) 131, 426
BsrFI RCCGGY 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 416
BssMI GATC 3 cut(s) 48, 356, 630
BssNI GRCGYC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 416
Bst2BI CACGAG 1 cut(s) 585
Bst4CI ACNGT 2 cut(s) 142, 334
Bst6I CTCTTC 2 cut(s) 438, 616
BstACI GRCGYC 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 381, 423
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 2 cut(s) 164, 293
BstKTI GATC 3 cut(s) 51, 359, 633
BstMAI GTCTC 3 cut(s) 131, 426, 541
BstMBI GATC 3 cut(s) 48, 356, 630
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNSI RCATGY 2 cut(s) 287, 599
BstSCI CCNGG 1 cut(s) 112
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 362, 399, 482
BstX2I RGATCY 1 cut(s) 356
BstXI CCANNNNNNTGG 1 cut(s) 551
BstYI RGATCY 1 cut(s) 356
BsuI GTATCC 2 cut(s) 120, 504
BsuRI GGCC 2 cut(s) 379, 537
BtsIMutI CAGTG 1 cut(s) 490
CfoI GCGC 2 cut(s) 164, 293
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 220, 377
CseI GACGC 1 cut(s) 104
CspAI ACCGGT 1 cut(s) 229
CviAII CATG 3 cut(s) 284, 452, 596
CviJI RGCY 9 cut(s) 70, 178, 196, 250, 379, 385, 412, 450, 537
CviKI_1 RGCY 9 cut(s) 70, 178, 196, 250, 379, 385, 412, 450, 537
DdeI CTNAG 2 cut(s) 381, 423
DpnI GATC 3 cut(s) 50, 358, 632
DpnII GATC 3 cut(s) 48, 356, 630
Eam1104I CTCTTC 2 cut(s) 438, 616
EarI CTCTTC 2 cut(s) 438, 616
Eco130I CCWWGG 1 cut(s) 416
Eco31I GGTCTC 2 cut(s) 131, 426
Eco47I GGWCC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 3 cut(s) 287, 455, 599
FatI CATG 3 cut(s) 283, 451, 595
Fnu4HI GCNGC 3 cut(s) 351, 413, 471
Fsp4HI GCNGC 3 cut(s) 351, 413, 471
FspBI CTAG 2 cut(s) 173, 417
GlaI GCGC 2 cut(s) 163, 292
GluI GCNGC 3 cut(s) 351, 413, 471
HaeIII GGCC 2 cut(s) 379, 537
HapII CCGG 7 cut(s) 67, 80, 114, 230, 259, 273, 504
HgaI GACGC 1 cut(s) 104
HhaI GCGC 2 cut(s) 164, 293
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 3 cut(s) 287, 455, 599
Hin6I GCGC 2 cut(s) 162, 291
HinP1I GCGC 2 cut(s) 162, 291
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 3 cut(s) 117, 131, 181
HpaII CCGG 7 cut(s) 67, 80, 114, 230, 259, 273, 504
HphI GGTGA 4 cut(s) 31, 46, 94, 412
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 5 cut(s) 136, 340, 361, 426, 463
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 233, 548
HpyCH4III ACNGT 2 cut(s) 142, 334
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 381, 423
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 3 cut(s) 287, 455, 599
HspAI GCGC 2 cut(s) 162, 291
Kzo9I GATC 3 cut(s) 48, 356, 630
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 9 cut(s) 80, 93, 127, 243, 272, 286, 393, 517, 557
Lsp1109I GCAGC 3 cut(s) 362, 399, 482
LweI GCATC 1 cut(s) 445
MaeI CTAG 2 cut(s) 173, 417
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 82, 92
MalI GATC 3 cut(s) 50, 358, 632
MboI GATC 3 cut(s) 48, 356, 630
MboII GAAGA 4 cut(s) 58, 455, 487, 633
MflI RGATCY 1 cut(s) 356
MluCI AATT 1 cut(s) 555
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 7 cut(s) 15, 180, 234, 390, 396, 611, 617
MroXI GAANNNNTTC 1 cut(s) 334
MseI TTAA 4 cut(s) 191, 314, 407, 437
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 7 cut(s) 67, 80, 114, 230, 259, 273, 504
MspR9I CCNGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 95
NciI CCSGG 1 cut(s) 114
NdeII GATC 3 cut(s) 48, 356, 630
NlaIII CATG 3 cut(s) 287, 455, 599
NmuCI GTSAC 2 cut(s) 82, 92
NspI RCATGY 2 cut(s) 287, 599
PciI ACATGT 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 117, 181
PfoI TCCNGGA 1 cut(s) 112
PinAI ACCGGT 1 cut(s) 229
PkrI GCNGC 3 cut(s) 352, 414, 472
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PscI ACATGT 1 cut(s) 283
PspPI GGNCC 2 cut(s) 220, 377
PsuI RGATCY 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 4 cut(s) 191, 314, 407, 437
SatI GCNGC 3 cut(s) 351, 413, 471
Sau3AI GATC 3 cut(s) 48, 356, 630
Sau96I GGNCC 2 cut(s) 220, 377
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 114
SetI ASST 8 cut(s) 36, 172, 225, 252, 366, 387, 407, 422
SfaNI GCATC 1 cut(s) 445
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 1 cut(s) 555
SsiI CCGC 2 cut(s) 519, 560
SspI AATATT 1 cut(s) 189
SspMI CTAG 2 cut(s) 173, 417
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 2 cut(s) 142, 334
TaiI ACGT 1 cut(s) 366
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 555
TfiI GAWTC 2 cut(s) 117, 181
Tru1I TTAA 4 cut(s) 191, 314, 407, 437
Tru9I TTAA 4 cut(s) 191, 314, 407, 437
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 2 cut(s) 82, 92
TseI GCWGC 3 cut(s) 350, 412, 470
Tsp45I GTSAC 2 cut(s) 82, 92
TspDTI ATGAA 1 cut(s) 59
TspRI CASTG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 220
XbaI TCTAGA 1 cut(s) 172
XceI RCATGY 2 cut(s) 287, 599
XmaJI CCTAGG 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 334
XspI CTAG 2 cut(s) 173, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.