Rh3BG346900

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015869
Physical Location & Seq
Forward (+)
38031056 .. 38033664
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG346900.1

Sequence Viewer

Length: 678 bp
ATGGGAAACACAATTGGAGGAAAAAGCAGGAAAGCAAAGGTGATGAAGATAAGTGGAGAAACGTTCAAGGTAAAGACTCCCATACGAGCTGGGGATCTAGTGAAGGAGCACCCAGGTCATATGCTATTGAATTCTGAAGCTGTTAAACATTTTGGTATGAGAGCTAAGCCATTAGAAGCGCAACAAGAGCTCAAGCCCAGGAGTATATATTTTCTGGTAGAATTGCCCAATTTTGATTATATGAATTCGGAAGAAGAAGCAAGAAGAAGAAGTAATAGCAGGGTGGCGAGAAGGGTGAGATCGTCGGCCAATATTCAAGTGAGCGCCAAGGAGAGGCTCGAGTGCTTGATGCTGTCTCGACGCTCTGCTTCCGACCTTACGAGTCTTGTGAGAGCAGCACCACCATCTTTAGGAGGAGCAGGAGGAGGAGGAGGAGGAGGAGCTCCGGTGAGGATGAAGATGAGGCTGCCGAGGGCGCAGGTGGTCAAATTGATGGAGGAGAGTAAGGATGAGATTGAAGTCGCCGACAAAATCATTCAGCTCTATATGGCCAATGCCGGCACCGTCGGCGATAACAGCAACACGGACAAAAACTTCACTTTCAAGGCGCGTCAGAAGCGAGTGAGTTTTGTCCCCGAGAAGAAAGGAGAAATTCAATTAGATGTAGCTCCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

225

Amino Acids

24.81

Weight (kDa)

10.1

Isoelectric Point (pI)

57.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 168 1.3e-20 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015869)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66480 AT5G37840
malus_domestica MD09G1261400.v1.1
prunus_persica Prupe.3G158800_v2.0.a1
pyrus_communis pycom09g17580
rosa_chinensis RchiOBHm_Chr3g0493541
rosa_laevigata RLG00000022707
rosa_multiflora Rmu_sc0002343.1_g000048
rosa_roxburghii Rroxscaffold_6G00391510
rosa_rugosa Rorug03G0261900
rosa_samantha Rh3AG310900 Rh3BG346900 Rh3CG344800 Rh3DG346200
rosa_wichuraiana Rw3G027330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 469
Acc36I ACCTGC 1 cut(s) 469
AccB1I GGYRCC 1 cut(s) 560
AccII CGCG 1 cut(s) 610
AclI AACGTT 1 cut(s) 62
AclWI GGATC 1 cut(s) 102
AcoI YGGCCR 2 cut(s) 306, 549
AcsI RAATTY 3 cut(s) 130, 244, 651
AcuI CTGAAG 1 cut(s) 156
AfiI CCNNNNNNNGG 2 cut(s) 333, 410
AgsI TTSAA 6 cut(s) 67, 130, 317, 518, 604, 656
AjnI CCWGG 2 cut(s) 112, 197
AluBI AGCT 7 cut(s) 89, 140, 164, 190, 443, 541, 668
AluI AGCT 7 cut(s) 89, 140, 164, 190, 443, 541, 668
Alw21I GWGCWC 3 cut(s) 111, 192, 445
Alw26I GTCTC 1 cut(s) 360
AlwI GGATC 1 cut(s) 102
Ama87I CYCGRG 2 cut(s) 338, 635
AoxI GGCC 2 cut(s) 306, 549
ApeKI GCWGC 2 cut(s) 395, 466
ApoI RAATTY 3 cut(s) 130, 244, 651
AspLEI GCGC 4 cut(s) 181, 326, 478, 610
AsuHPI GGTGA 3 cut(s) 52, 307, 460
AvaI CYCGRG 2 cut(s) 338, 635
BalI TGGCCA 1 cut(s) 551
BanI GGYRCC 1 cut(s) 560
BanII GRGCYC 2 cut(s) 192, 445
Bbv12I GWGCWC 3 cut(s) 111, 192, 445
BbvI GCAGC 2 cut(s) 407, 453
BccI CCATC 2 cut(s) 412, 487
BciT130I CCWGG 2 cut(s) 114, 199
BcoDI GTCTC 1 cut(s) 360
BfaI CTAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 327
BfuAI ACCTGC 1 cut(s) 469
BisI GCNGC 2 cut(s) 396, 467
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 2 cut(s) 397, 468
Bme1390I CCNGG 2 cut(s) 114, 199
BmeT110I CYCGRG 2 cut(s) 338, 635
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 2 cut(s) 114, 199
BmsI GCATC 1 cut(s) 339
Bpu1102I GCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 176
BsaJI CCNNGG 4 cut(s) 112, 197, 327, 470
BsaWI WCCGGW 1 cut(s) 445
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 410
Bse118I RCCGGY 1 cut(s) 557
BseBI CCWGG 2 cut(s) 114, 199
BseDI CCNNGG 4 cut(s) 112, 197, 327, 470
BseGI GGATG 2 cut(s) 459, 514
BseLI CCNNNNNNNGG 2 cut(s) 333, 410
BseRI GAGGAG 9 cut(s) 429, 438, 441, 444, 447, 450, 453, 512, 660
BseXI GCAGC 2 cut(s) 407, 453
BseYI CCCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 610
BshFI GGCC 2 cut(s) 308, 551
BshNI GGYRCC 1 cut(s) 560
BsiHKAI GWGCWC 3 cut(s) 111, 192, 445
BsiHKCI CYCGRG 2 cut(s) 338, 635
BsiSI CCGG 2 cut(s) 446, 558
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 2 cut(s) 333, 410
BsmAI GTCTC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 617
BsnI GGCC 2 cut(s) 308, 551
BsoBI CYCGRG 2 cut(s) 338, 635
Bsp1286I GDGCHC 3 cut(s) 111, 192, 445
Bsp143I GATC 2 cut(s) 94, 299
Bsp1720I GCTNAGC 1 cut(s) 165
BspANI GGCC 2 cut(s) 308, 551
BspFNI CGCG 1 cut(s) 610
BspLI GGNNCC 1 cut(s) 562
BspMI ACCTGC 1 cut(s) 469
BspPI GGATC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 560
BsrFI RCCGGY 1 cut(s) 557
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 4 cut(s) 112, 197, 327, 470
BssMI GATC 2 cut(s) 94, 299
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 2 cut(s) 114, 199
Bst4CI ACNGT 1 cut(s) 565
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 459, 514
BstFNI CGCG 1 cut(s) 610
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 4 cut(s) 181, 326, 478, 610
BstKTI GATC 2 cut(s) 97, 302
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 2 cut(s) 94, 299
BstMWI GCNNNNNNNGC 5 cut(s) 187, 475, 567, 576, 616
BstNI CCWGG 2 cut(s) 114, 199
BstSCI CCNGG 2 cut(s) 112, 197
BstUI CGCG 1 cut(s) 610
BstV1I GCAGC 2 cut(s) 407, 453
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BsuRI GGCC 2 cut(s) 308, 551
BtsCI GGATG 2 cut(s) 459, 514
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 1 cut(s) 559
CfoI GCGC 4 cut(s) 181, 326, 478, 610
Cfr10I RCCGGY 1 cut(s) 557
CseI GACGC 2 cut(s) 369, 599
DdeI CTNAG 1 cut(s) 165
DpnI GATC 2 cut(s) 96, 301
DpnII GATC 2 cut(s) 94, 299
EaeI YGGCCR 2 cut(s) 306, 549
Ecl136II GAGCTC 2 cut(s) 190, 443
Eco130I CCWWGG 1 cut(s) 327
Eco24I GRGCYC 2 cut(s) 192, 445
Eco53kI GAGCTC 2 cut(s) 190, 443
Eco57I CTGAAG 1 cut(s) 156
Eco88I CYCGRG 2 cut(s) 338, 635
EcoICRI GAGCTC 2 cut(s) 190, 443
EcoRI GAATTC 2 cut(s) 130, 244
EcoRII CCWGG 2 cut(s) 112, 197
EcoT14I CCWWGG 1 cut(s) 327
EcoT38I GRGCYC 2 cut(s) 192, 445
ErhI CCWWGG 1 cut(s) 327
FaqI GGGAC 1 cut(s) 617
FauNDI CATATG 1 cut(s) 120
Fnu4HI GCNGC 2 cut(s) 396, 467
FokI GGATG 2 cut(s) 466, 521
FriOI GRGCYC 2 cut(s) 192, 445
Fsp4HI GCNGC 2 cut(s) 396, 467
FspBI CTAG 1 cut(s) 98
GlaI GCGC 4 cut(s) 180, 325, 477, 609
GluI GCNGC 2 cut(s) 396, 467
GsaI CCCAGC 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 2 cut(s) 308, 551
HapII CCGG 2 cut(s) 446, 558
HgaI GACGC 2 cut(s) 369, 599
HhaI GCGC 4 cut(s) 181, 326, 478, 610
Hin6I GCGC 4 cut(s) 179, 324, 476, 608
HinP1I GCGC 4 cut(s) 179, 324, 476, 608
HinfI GANTC 2 cut(s) 76, 382
HpaII CCGG 2 cut(s) 446, 558
HphI GGTGA 3 cut(s) 52, 307, 460
Hpy188I TCNGA 4 cut(s) 136, 250, 373, 615
Hpy188III TCNNGA 1 cut(s) 357
Hpy99I CGWCG 3 cut(s) 307, 363, 569
HpyAV CCTTC 2 cut(s) 97, 285
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4IV ACGT 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 5 cut(s) 187, 475, 567, 576, 616
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 62
HspAI GCGC 4 cut(s) 179, 324, 476, 608
KroI GCCGGC 1 cut(s) 557
KroNI GCCGGC 1 cut(s) 559
Kzo9I GATC 2 cut(s) 94, 299
LmnI GCTCC 5 cut(s) 106, 416, 440, 448, 673
Lsp1109I GCAGC 2 cut(s) 407, 453
LweI GCATC 1 cut(s) 339
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 62
MalI GATC 2 cut(s) 96, 301
MboI GATC 2 cut(s) 94, 299
MboII GAAGA 7 cut(s) 58, 263, 266, 276, 279, 469, 652
MfeI CAATTG 1 cut(s) 12
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 3 cut(s) 111, 192, 445
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 8 cut(s) 12, 130, 221, 229, 244, 488, 651, 656
MluNI TGGCCA 1 cut(s) 551
MlyI GAGTC 2 cut(s) 70, 391
MmeI TCCRAC 1 cut(s) 396
Mox20I TGGCCA 1 cut(s) 551
MroNI GCCGGC 1 cut(s) 557
MscI TGGCCA 1 cut(s) 551
MseI TTAA 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 551
MspI CCGG 2 cut(s) 446, 558
MspR9I CCNGG 2 cut(s) 114, 199
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 2 cut(s) 114, 199
MvnI CGCG 1 cut(s) 610
MwoI GCNNNNNNNGC 5 cut(s) 187, 475, 567, 576, 616
NaeI GCCGGC 1 cut(s) 559
NdeI CATATG 1 cut(s) 120
NdeII GATC 2 cut(s) 94, 299
NgoMIV GCCGGC 1 cut(s) 557
NlaIV GGNNCC 1 cut(s) 562
NmeAIII GCCGAG 1 cut(s) 495
PaeR7I CTCGAG 1 cut(s) 338
PaqCI CACCTGC 1 cut(s) 469
PdiI GCCGGC 1 cut(s) 559
PkrI GCNGC 2 cut(s) 397, 468
PleI GAGTC 2 cut(s) 70, 390
PpsI GAGTC 2 cut(s) 70, 390
Psp124BI GAGCTC 2 cut(s) 192, 445
Psp1406I AACGTT 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 112, 197
PspFI CCCAGC 1 cut(s) 89
PspGI CCWGG 2 cut(s) 112, 197
PspN4I GGNNCC 1 cut(s) 562
PspXI VCTCGAGB 1 cut(s) 338
PsuI RGATCY 1 cut(s) 94
SacI GAGCTC 2 cut(s) 192, 445
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 2 cut(s) 396, 467
Sau3AI GATC 2 cut(s) 94, 299
SchI GAGTC 2 cut(s) 70, 391
ScrFI CCNGG 2 cut(s) 114, 199
SduI GDGCHC 3 cut(s) 111, 192, 445
SfaNI GCATC 1 cut(s) 339
Sfr274I CTCGAG 1 cut(s) 338
SlaI CTCGAG 1 cut(s) 338
SmlI CTYRAG 2 cut(s) 191, 338
SmoI CTYRAG 2 cut(s) 191, 338
Sse9I AATT 8 cut(s) 12, 130, 221, 229, 244, 488, 651, 656
SspI AATATT 1 cut(s) 313
SspMI CTAG 1 cut(s) 98
SstI GAGCTC 2 cut(s) 192, 445
StyD4I CCNGG 2 cut(s) 112, 197
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 565
TaiI ACGT 1 cut(s) 65
TaqI TCGA 2 cut(s) 339, 358
TasI AATT 8 cut(s) 12, 130, 221, 229, 244, 488, 651, 656
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 2 cut(s) 395, 466
TspDTI ATGAA 3 cut(s) 59, 257, 470
TspGWI ACGGA 1 cut(s) 599
XapI RAATTY 3 cut(s) 130, 244, 651
XhoI CTCGAG 1 cut(s) 338
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.