AT5G38150

Protein PLASTID MOVEMENT IMPAIRED 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007774
Physical Location & Seq
Reverse (-)
15222867 .. 15225192
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38150.1

Sequence Viewer

Length: 1740 bp
ATGTTGAATCGAGCAATGGAAAATTCCGACATGAAGAGGAACAGTTCTACTTTGTTGGATTTACCAGTCGTTAAGTCGTCTTTAGTTGTGGAGGCTATACATATGTCAAGAAAGAAACTTGGTTGGTACAATGAGAGTAGAAGAGATTCAGAGACTGTAAAAGCTAGAGTAGAAGCGGGATTGTCCGAGGTAAAGAAGTCGGTGGAGGAGCTCGCGTTACTGATAAAAAGGTCGAATCGTTCTGCGGGGTTTCAGGAAAAGGATATGGAAGTGTTGAAGATGGAGGAAAAGTATGCGGAAGTTATGAGAGTTTTGGAGGTTGTGAAAGAAGAAGTGAGTAGAGTGAAGCTTGATGTATCATCTGTTTTGATAGAGAGAGTTGCAGCAGAGGAAAAAGTCGAAGAACTGCGGTTTAAAACGGAAGGGGGTTTGAGATTGTTGGAGAGTCTGAAGAAGGAAATCGAGGTTGCGAATGAGGAACATTTGATGGTTGCATTGGGAAAGATTGAGGCGTTGAAAGGATATAAAGAGATAGAAAGACAGAGAGAAGGGAAAGCTATAAAGGTTTTGGATTTGTTGGTGGAAAGGAATAAGAGAATCAAGAACATGTTGGAAGAGGCGGAAAGATCGAAGGATATTGAAATTGAGTTGTTTGAGACGAGTACGGATGTTGAGATGTTGGAAACACAGTTAAAGCTTTTCAAGAAAATGGAGAGGAGAGTTCAGGGGAGAGATAGTAGTAGTATGTCGAGATCAAACCGTTCTTTTGGAAGAGGGAAGTATAGTTTATCGGTTTTGAAAGAAGTGACTGAAGGGAAGAAGGAGGAACTTGCTTCTGTTAAAGTAGAGATCTTCAGGGTCATGACAGTAATGGATGCGTTGAGGAATGAGATTATCCGAGCCAGGGATGAAACAGCTTGCCTTGGAAAAATCTTGAGGGAAGATGATGTTAAGATTGAGAAACTCAACTCAAAGATTCTTATCGAAAAATCGAAGTTGGAAGTGGTATCTATCGCCGAAGAAAGGATTAGCTCTCTTGCTGAGAATTTCGTTGGTTCGCTTGAGAAGATAAAGAAAAGTAGAAATGCTGCAAAGAAAGAGGAGTTCCTTTTCAAAGAAGAGAAGACGGTTACAAAGGCGGAAACACAGAAAACCAAACTTGATATAGATAAAAAGGAAAGCGAACTGAATTCAAAGTTGGATGAGCTTGAAAAAGTGAAGCACACTGAGGCTTTAGTGCTTGAGAAGCTTGAATCTTTAGTAGAAGACATGATGGAGAGTCGCGAAATGGAGTCTGAGCATTGTTCAACAATCACTATCTCGAGGTTTGAGTACGAGTATTTGAGTAAACATGCTTCACAAGCGGAAGAAACCGCAGAGAAGAAAGTTGCAGCAGCAGCGGCGTGGGTGGAAGCACTCAAGGCTAGCACAAAATCGTTTCTGATGAAGACGGAAACTTTGATGAGAGAAAGTGAAATGACGAAAGCGGAAGAAGAGAGAGAAGTGTTTAGGATGGAAAGGTCATTGTCGACGAAGAGATTGGTGGAGGGTGAGATTCAGAAGATTAAGAGGAACTCGGAAGCTGAAGGCTATATTTCTCCCAAACCAGTTGGAAAATTCACACCGGTCCAACGTGGGAAGCCAAGAAGATACTCATCTGTTGGAACTCCAACTTTCTTTGTAATCAAGAAGAAAAAGAAAGTTCCACGCTTGGCCAAGTTCTTCAGTCGCAGAAGTTAA

Protein Analysis

579

Amino Acids

66.69

Weight (kDa)

9.08

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 47 - 527 5.3e-09 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1529
AccII CGCG 2 cut(s) 215, 1284
AcoI YGGCCR 1 cut(s) 1713
AcsI RAATTY 4 cut(s) 22, 1045, 1189, 1616
AcuI CTGAAG 5 cut(s) 470, 831, 838, 1605, 1708
AfaI GTAC 3 cut(s) 128, 664, 1334
AfiI CCNNNNNNNGG 2 cut(s) 904, 1023
AflIII ACRYGT 1 cut(s) 606
AgeI ACCGGT 1 cut(s) 1624
AjnI CCWGG 1 cut(s) 902
AjuI GAANNNNNNNTTGG 2 cut(s) 1181, 1213
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 2 cut(s) 146, 650
AlwNI CAGNNNCTG 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 1321
AoxI GGCC 1 cut(s) 1713
ApeKI GCWGC 5 cut(s) 383, 1088, 1391, 1394, 1397
ApoI RAATTY 4 cut(s) 22, 1045, 1189, 1616
ArsI GACNNNNNNTTYG 2 cut(s) 1441, 1473
AsiGI ACCGGT 1 cut(s) 1624
Asp700I GAANNNNTTC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 1627
AsuHPI GGTGA 1 cut(s) 1562
AsuNHI GCTAGC 1 cut(s) 1424
AvaI CYCGRG 1 cut(s) 1321
AvaII GGWCC 1 cut(s) 1627
BalI TGGCCA 1 cut(s) 1715
BanII GRGCYC 1 cut(s) 213
BarI GAAGNNNNNNTAC 2 cut(s) 1339, 1371
BbsI GAAGAC 3 cut(s) 1130, 1272, 1454
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 5 cut(s) 395, 1075, 1403, 1406, 1409
BccI CCATC 4 cut(s) 274, 481, 1267, 1507
BciT130I CCWGG 1 cut(s) 904
BcoDI GTCTC 2 cut(s) 146, 650
BfaI CTAG 2 cut(s) 165, 1425
BglII AGATCT 1 cut(s) 849
BisI GCNGC 6 cut(s) 384, 1089, 1392, 1395, 1398, 1401
BlsI GCNGC 6 cut(s) 385, 1090, 1393, 1396, 1399, 1402
Bme1390I CCNGG 1 cut(s) 904
Bme18I GGWCC 1 cut(s) 1627
BmeT110I CYCGRG 1 cut(s) 1321
BmgT120I GGNCC 1 cut(s) 1627
BmrFI CCNGG 1 cut(s) 904
BmsI GCATC 1 cut(s) 865
BmtI GCTAGC 1 cut(s) 1428
BpiI GAAGAC 3 cut(s) 1130, 1272, 1454
BpuEI CTTGAG 4 cut(s) 955, 1082, 1262, 1403
BsaBI GATNNNNATC 2 cut(s) 980, 1654
BsaJI CCNNGG 3 cut(s) 186, 903, 922
BsaWI WCCGGW 1 cut(s) 1624
BsaXI ACNNNNNCTCC 6 cut(s) 200, 230, 275, 305, 721, 751
Bsc4I CCNNNNNNNGG 2 cut(s) 904, 1023
Bse118I RCCGGY 1 cut(s) 1624
Bse1I ACTGG 2 cut(s) 65, 1607
Bse3DI GCAATG 1 cut(s) 21
Bse8I GATNNNNATC 2 cut(s) 980, 1654
BseBI CCWGG 1 cut(s) 904
BseDI CCNNGG 3 cut(s) 186, 903, 922
BseGI GGATG 5 cut(s) 673, 880, 913, 1207, 1518
BseJI GATNNNNATC 2 cut(s) 980, 1654
BseLI CCNNNNNNNGG 2 cut(s) 904, 1023
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 3 cut(s) 1032, 1218, 1287
BseNI ACTGG 2 cut(s) 65, 1607
BseRI GAGGAG 3 cut(s) 221, 730, 1115
BseXI GCAGC 5 cut(s) 395, 1075, 1403, 1406, 1409
Bsh1236I CGCG 2 cut(s) 215, 1284
BshFI GGCC 1 cut(s) 1715
BshTI ACCGGT 1 cut(s) 1624
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 1321
BsiSI CCGG 1 cut(s) 1625
BslI CCNNNNNNNGG 2 cut(s) 904, 1023
BsmAI GTCTC 2 cut(s) 146, 650
BsmBI CGTCTC 1 cut(s) 650
BsnI GGCC 1 cut(s) 1715
BsoBI CYCGRG 1 cut(s) 1321
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 3 cut(s) 626, 752, 849
Bsp68I TCGCGA 1 cut(s) 1284
BspANI GGCC 1 cut(s) 1715
BspCNI CTCAG 3 cut(s) 1033, 1219, 1288
BspFNI CGCG 2 cut(s) 215, 1284
BspHI TCATGA 1 cut(s) 861
BspOI GCTAGC 1 cut(s) 1428
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 1624
BsrI ACTGG 2 cut(s) 65, 1607
BssAI RCCGGY 1 cut(s) 1624
BssECI CCNNGG 3 cut(s) 186, 903, 922
BssMI GATC 3 cut(s) 626, 752, 849
BssT1I CCWWGG 1 cut(s) 922
Bst2UI CCWGG 1 cut(s) 904
Bst4CI ACNGT 6 cut(s) 44, 157, 690, 761, 868, 1129
Bst6I CTCTTC 7 cut(s) 29, 136, 609, 766, 1113, 1488, 1529
BstC8I GCNNGC 3 cut(s) 213, 919, 1426
BstDEI CTNAG 3 cut(s) 1041, 1227, 1296
BstF5I GGATG 5 cut(s) 673, 880, 913, 1207, 1518
BstFNI CGCG 2 cut(s) 215, 1284
BstKTI GATC 3 cut(s) 629, 755, 852
BstMAI GTCTC 2 cut(s) 146, 650
BstMBI GATC 3 cut(s) 626, 752, 849
BstMWI GCNNNNNNNGC 5 cut(s) 1246, 1361, 1397, 1400, 1421
BstNI CCWGG 1 cut(s) 904
BstNSI RCATGY 2 cut(s) 610, 1355
BstSCI CCNGG 1 cut(s) 902
BstUI CGCG 2 cut(s) 215, 1284
BstV1I GCAGC 5 cut(s) 395, 1075, 1403, 1406, 1409
BstV2I GAAGAC 3 cut(s) 1130, 1272, 1454
BstX2I RGATCY 1 cut(s) 849
BstYI RGATCY 1 cut(s) 849
BsuRI GGCC 1 cut(s) 1715
BtsCI GGATG 5 cut(s) 673, 880, 913, 1207, 1518
BtsIMutI CAGTG 1 cut(s) 1224
BtuMI TCGCGA 1 cut(s) 1284
Cac8I GCNNGC 3 cut(s) 213, 919, 1426
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 1 cut(s) 861
Cfr10I RCCGGY 1 cut(s) 1624
Cfr13I GGNCC 1 cut(s) 1627
Csp6I GTAC 3 cut(s) 127, 663, 1333
CspAI ACCGGT 1 cut(s) 1624
CviAII CATG 5 cut(s) 31, 607, 862, 1270, 1352
CviQI GTAC 3 cut(s) 127, 663, 1333
DdeI CTNAG 3 cut(s) 1041, 1227, 1296
DpnI GATC 3 cut(s) 628, 754, 851
DpnII GATC 3 cut(s) 626, 752, 849
DraI TTTAAA 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 1713
Eam1104I CTCTTC 7 cut(s) 29, 136, 609, 766, 1113, 1488, 1529
EarI CTCTTC 7 cut(s) 29, 136, 609, 766, 1113, 1488, 1529
EciI GGCGGA 2 cut(s) 635, 1154
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 922
Eco24I GRGCYC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 1627
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 5 cut(s) 470, 831, 838, 1605, 1708
Eco88I CYCGRG 1 cut(s) 1321
EcoICRI GAGCTC 1 cut(s) 211
EcoRI GAATTC 1 cut(s) 1189
EcoRII CCWGG 1 cut(s) 902
EcoT14I CCWWGG 1 cut(s) 922
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 922
Esp3I CGTCTC 1 cut(s) 650
FaeI CATG 5 cut(s) 34, 610, 865, 1273, 1355
FatI CATG 5 cut(s) 30, 606, 861, 1269, 1351
FauI CCCGC 2 cut(s) 169, 238
FauNDI CATATG 1 cut(s) 102
FblI GTMKAC 1 cut(s) 1529
Fnu4HI GCNGC 6 cut(s) 384, 1089, 1392, 1395, 1398, 1401
FokI GGATG 5 cut(s) 680, 887, 920, 1214, 1525
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 6 cut(s) 384, 1089, 1392, 1395, 1398, 1401
FspBI CTAG 2 cut(s) 165, 1425
GluI GCNGC 6 cut(s) 384, 1089, 1392, 1395, 1398, 1401
HaeIII GGCC 1 cut(s) 1715
HapII CCGG 1 cut(s) 1625
Hin1II CATG 5 cut(s) 34, 610, 865, 1273, 1355
HincII GTYRAC 1 cut(s) 1530
HindII GTYRAC 1 cut(s) 1530
HindIII AAGCTT 3 cut(s) 347, 695, 1247
HpaII CCGG 1 cut(s) 1625
HphI GGTGA 1 cut(s) 1562
Hpy166II GTNNAC 2 cut(s) 1349, 1530
Hpy188I TCNGA 9 cut(s) 28, 151, 187, 450, 899, 1297, 1443, 1560, 1579
Hpy8I GTNNAC 2 cut(s) 1349, 1530
Hpy99I CGWCG 1 cut(s) 1534
HpyAV CCTTC 7 cut(s) 416, 448, 542, 625, 806, 814, 1580
HpyCH4III ACNGT 6 cut(s) 44, 157, 690, 761, 868, 1129
HpyCH4IV ACGT 1 cut(s) 1633
HpyCH4V TGCA 4 cut(s) 383, 494, 1091, 1391
HpyF10VI GCNNNNNNNGC 5 cut(s) 1246, 1361, 1397, 1400, 1421
HpyF3I CTNAG 3 cut(s) 1041, 1227, 1296
HpySE526I ACGT 1 cut(s) 1633
Hsp92II CATG 5 cut(s) 34, 610, 865, 1273, 1355
Kzo9I GATC 3 cut(s) 626, 752, 849
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 8 cut(s) 78, 239, 710, 841, 889, 916, 1620, 1638
Lsp1109I GCAGC 5 cut(s) 395, 1075, 1403, 1406, 1409
LweI GCATC 1 cut(s) 865
MaeI CTAG 2 cut(s) 165, 1425
MaeII ACGT 1 cut(s) 1633
MaeIII GTNAC 3 cut(s) 216, 805, 1129
MalI GATC 3 cut(s) 628, 754, 851
MboI GATC 3 cut(s) 626, 752, 849
MflI RGATCY 1 cut(s) 849
MhlI GDGCHC 1 cut(s) 213
MlsI TGGCCA 1 cut(s) 1715
MluCI AATT 5 cut(s) 22, 642, 1045, 1189, 1616
MluNI TGGCCA 1 cut(s) 1715
MlyI GAGTC 3 cut(s) 454, 1288, 1301
Mox20I TGGCCA 1 cut(s) 1715
MroXI GAANNNNTTC 1 cut(s) 145
MscI TGGCCA 1 cut(s) 1715
MseI TTAA 7 cut(s) 72, 414, 692, 840, 951, 1566, 1738
Msp20I TGGCCA 1 cut(s) 1715
MspA1I CMGCKG 1 cut(s) 1400
MspI CCGG 1 cut(s) 1625
MspR9I CCNGG 1 cut(s) 904
MvaI CCWGG 1 cut(s) 904
MvnI CGCG 2 cut(s) 215, 1284
MwoI GCNNNNNNNGC 5 cut(s) 1246, 1361, 1397, 1400, 1421
NdeI CATATG 1 cut(s) 102
NdeII GATC 3 cut(s) 626, 752, 849
NheI GCTAGC 1 cut(s) 1424
NlaIII CATG 5 cut(s) 34, 610, 865, 1273, 1355
NmuCI GTSAC 1 cut(s) 805
NruI TCGCGA 1 cut(s) 1284
NspI RCATGY 2 cut(s) 610, 1355
PaeR7I CTCGAG 1 cut(s) 1321
PagI TCATGA 1 cut(s) 861
PciI ACATGT 1 cut(s) 606
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 7 cut(s) 7, 146, 235, 597, 976, 1253, 1555
PinAI ACCGGT 1 cut(s) 1624
PkrI GCNGC 6 cut(s) 385, 1090, 1393, 1396, 1399, 1402
PleI GAGTC 3 cut(s) 453, 1287, 1300
PpsI GAGTC 3 cut(s) 453, 1287, 1300
PscI ACATGT 1 cut(s) 606
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 902
PspGI CCWGG 1 cut(s) 902
PspPI GGNCC 1 cut(s) 1627
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 849
RruI TCGCGA 1 cut(s) 1284
RsaI GTAC 3 cut(s) 128, 664, 1334
RsaNI GTAC 3 cut(s) 127, 663, 1333
SacI GAGCTC 1 cut(s) 213
SalI GTCGAC 1 cut(s) 1528
SaqAI TTAA 7 cut(s) 72, 414, 692, 840, 951, 1566, 1738
SatI GCNGC 6 cut(s) 384, 1089, 1392, 1395, 1398, 1401
Sau3AI GATC 3 cut(s) 626, 752, 849
Sau96I GGNCC 1 cut(s) 1627
SchI GAGTC 3 cut(s) 454, 1288, 1301
ScrFI CCNGG 1 cut(s) 904
SduI GDGCHC 1 cut(s) 213
SfaNI GCATC 1 cut(s) 865
Sfr274I CTCGAG 1 cut(s) 1321
SinI GGWCC 1 cut(s) 1627
SlaI CTCGAG 1 cut(s) 1321
SmlI CTYRAG 5 cut(s) 934, 1061, 1241, 1321, 1418
SmoI CTYRAG 5 cut(s) 934, 1061, 1241, 1321, 1418
Sse9I AATT 5 cut(s) 22, 642, 1045, 1189, 1616
SspMI CTAG 2 cut(s) 165, 1425
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 902
StyI CCWWGG 1 cut(s) 922
TaaI ACNGT 6 cut(s) 44, 157, 690, 761, 868, 1129
TaiI ACGT 1 cut(s) 1636
TasI AATT 5 cut(s) 22, 642, 1045, 1189, 1616
TauI GCSGC 1 cut(s) 1403
TfiI GAWTC 7 cut(s) 7, 146, 235, 597, 976, 1253, 1555
Tru1I TTAA 7 cut(s) 72, 414, 692, 840, 951, 1566, 1738
Tru9I TTAA 7 cut(s) 72, 414, 692, 840, 951, 1566, 1738
TscAI CASTG 1 cut(s) 1231
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 5 cut(s) 383, 1088, 1391, 1394, 1397
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 3 cut(s) 47, 924, 1460
TspGWI ACGGA 3 cut(s) 434, 680, 1466
TspRI CASTG 1 cut(s) 1231
VpaK11BI GGWCC 1 cut(s) 1627
XapI RAATTY 4 cut(s) 22, 1045, 1189, 1616
XceI RCATGY 2 cut(s) 610, 1355
XhoI CTCGAG 1 cut(s) 1321
XmiI GTMKAC 1 cut(s) 1529
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 2 cut(s) 165, 1425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.