Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007774

Physical Location & Seq

Genomic Coordinates Forward (+)

23466803 .. 23467219

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g25360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCACGCAGGGAAATAGGTCGATTCAAAGAAAACAGAACGGACACAGACGCCTTAAGAGCACAAGCGCAATCCGAGATGCTTGATGCAATGAAGAGAGCTAAAGATTTCTCTACTGTAATTGGGGAATCAAGCTCCAAGGCGAAATCACATACGCGAGAGATTCAAGTACTAAAGAAATCGAGAAGGCGCGTTGGTACGCGGGAAGATCAGGTATTGGCTACTGGGGATGTGGACAATAAAAAATGTACAGAAGTGATGAGAGAATTGGAACTTGTGAGACAGGAACTACGCATGCTTAAGCTTGATATGGCATCGATTTTAGAAGAGAAATTGGGGGCAGAGAAGCAAACTGAGGCCTCAAAAGCAAAGATGTTTTATACATGCTTAAAGCTTGTTAAGGACCCAACTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

139

Amino Acids

15.8

Weight (kDa)

9.54

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66840 AT1G66840 AT5G38150
fragaria_vesca	FvH4_1g25551
malus_domestica	MD09G1256700.v1.1 MD17G1250200.v1.1
prunus_persica	Prupe.3G148500_v2.0.a1 Prupe.3G148500_v2.0.a1 Prupe.3G148500_v2.0.a1
pyrus_communis	pycom09g17230 pycom17g25360 pycom17g25390 pycom17g25400
rosa_chinensis	RchiOBHm_Chr2g0123711
rosa_laevigata	RLG00000018771
rosa_multiflora	Rmu_sc0002870.1_g000003 Rmu_sc0021381.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120400
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306500 Rh2BG314900 Rh2CG292900 Rh2DG330200
rosa_wichuraiana	Rw2G024590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	157, 192, 202
AciI	CCGC	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	3 cut(s)	171, 199, 250
AflII	CTTAAG	2 cut(s)	55, 299
AgsI	TTSAA	2 cut(s)	28, 167
AhlI	ACTAGT	1 cut(s)	410
AluBI	AGCT	4 cut(s)	101, 135, 304, 394
AluI	AGCT	4 cut(s)	101, 135, 304, 394
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	274
AoxI	GGCC	1 cut(s)	357
AspLEI	GCGC	2 cut(s)	70, 192
AspS9I	GGNCC	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	403
Bbv12I	GWGCWC	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	274
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	1 cut(s)	411
BfrI	CTTAAG	2 cut(s)	55, 299
BmcAI	AGTACT	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	405
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	3 cut(s)	69, 76, 323
BmuI	ACTGGG	1 cut(s)	234
Bsa29I	ATCGAT	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	96
BseCI	ATCGAT	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	229
Bsh1236I	CGCG	3 cut(s)	157, 192, 202
BshFI	GGCC	1 cut(s)	359
BshVI	ATCGAT	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp1407I	TGTACA	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	1 cut(s)	346
BspDI	ATCGAT	1 cut(s)	317
BspFNI	CGCG	3 cut(s)	157, 192, 202
BspLI	GGNNCC	1 cut(s)	405
BspTI	CTTAAG	2 cut(s)	55, 299
BsrDI	GCAATG	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	208
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	2 cut(s)	89, 321
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	2 cut(s)	55, 299
BstAUI	TGTACA	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	7, 296
BstDEI	CTNAG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	3 cut(s)	157, 192, 202
BstHHI	GCGC	2 cut(s)	70, 192
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 365
BstNSI	RCATGY	2 cut(s)	298, 387
BstUI	CGCG	3 cut(s)	157, 192, 202
Bsu15I	ATCGAT	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	359
BsuTUI	ATCGAT	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	7, 296
CfoI	GCGC	2 cut(s)	70, 192
Cfr13I	GGNCC	1 cut(s)	403
ClaI	ATCGAT	1 cut(s)	317
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	3 cut(s)	170, 198, 249
CviAII	CATG	2 cut(s)	295, 384
CviJI	RGCY	6 cut(s)	101, 135, 221, 304, 359, 394
CviKI_1	RGCY	6 cut(s)	101, 135, 221, 304, 359, 394
CviQI	GTAC	3 cut(s)	170, 198, 249
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	89, 321
EarI	CTCTTC	2 cut(s)	89, 321
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	298, 387
FaiI	YATR	5 cut(s)	153, 296, 311, 381, 385
FatI	CATG	2 cut(s)	294, 383
FauI	CCCGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	242
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	2 cut(s)	69, 191
HaeIII	GGCC	1 cut(s)	359
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	70, 192
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	298, 387
Hin6I	GCGC	2 cut(s)	68, 190
HinP1I	GCGC	2 cut(s)	68, 190
HindIII	AAGCTT	2 cut(s)	302, 392
HinfI	GANTC	3 cut(s)	24, 128, 163
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 365
HpyF3I	CTNAG	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	298, 387
HspAI	GCGC	2 cut(s)	68, 190
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	3 cut(s)	197, 210, 269
LweI	GCATC	3 cut(s)	69, 76, 323
MaeI	CTAG	1 cut(s)	411
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	3 cut(s)	106, 218, 338
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	3 cut(s)	120, 266, 332
MnlI	CCTC	2 cut(s)	349, 370
MseI	TTAA	5 cut(s)	56, 300, 389, 399, 415
MspCI	CTTAAG	2 cut(s)	55, 299
MvnI	CGCG	3 cut(s)	157, 192, 202
MwoI	GCNNNNNNNGC	2 cut(s)	59, 365
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	2 cut(s)	298, 387
NlaIV	GGNNCC	1 cut(s)	405
NspI	RCATGY	2 cut(s)	298, 387
PaeI	GCATGC	1 cut(s)	298
PceI	AGGCCT	1 cut(s)	359
PfeI	GAWTC	3 cut(s)	24, 128, 163
PpuMI	RGGWCCY	1 cut(s)	403
Psp5II	RGGWCCY	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	403
PspPPI	RGGWCCY	1 cut(s)	403
RsaI	GTAC	3 cut(s)	171, 199, 250
RsaNI	GTAC	3 cut(s)	170, 198, 249
SaqAI	TTAA	5 cut(s)	56, 300, 389, 399, 415
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	1 cut(s)	403
ScaI	AGTACT	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	6 cut(s)	22, 103, 137, 216, 306, 396
SfaNI	GCATC	3 cut(s)	69, 76, 323
SinI	GGWCC	1 cut(s)	403
SmlI	CTYRAG	2 cut(s)	55, 299
SmoI	CTYRAG	2 cut(s)	55, 299
SpeI	ACTAGT	1 cut(s)	410
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	3 cut(s)	120, 266, 332
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	1 cut(s)	411
StuI	AGGCCT	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	3 cut(s)	22, 182, 317
TasI	AATT	3 cut(s)	120, 266, 332
TatI	WGTACW	2 cut(s)	169, 248
TfiI	GAWTC	3 cut(s)	24, 128, 163
Tru1I	TTAA	5 cut(s)	56, 300, 389, 399, 415
Tru9I	TTAA	5 cut(s)	56, 300, 389, 399, 415
TspDTI	ATGAA	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	56
Vha464I	CTTAAG	2 cut(s)	55, 299
VpaK11BI	GGWCC	1 cut(s)	403
XceI	RCATGY	2 cut(s)	298, 387
XspI	CTAG	1 cut(s)	411
ZrmI	AGTACT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.