Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007774

Physical Location & Seq

Genomic Coordinates Forward (+)

29981607 .. 29982758

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1250200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAAGATATTGTTAAACAGGTTGATTACTCAAGAGACCTCGAAACCAAGTTAGCTGTCACAATGTCTGATGTGCATGTGTTGCAGAATGAACTAAAGGTAGTTAAAGAAATGGACAAAAGGATTCAAAGGATTGACAGCTTGAGTCGTTTAGAACCCAGTTTTCGGAAAGAGGAAGACTTGGAAGGCTCAGAGCTGTTACAGTCAGTTACGGAAGAACTTGAGGCGGGAAAGACAGAATTGGCTGCAGTAAAAGAAGAATGTTTTCAGTACATGGCCTCCATGGATGTTATAAGAAATGAGCATAAGCATTTAACAAACAAGACAGCTCGGTTAAGGAAGACAGAAGAGAAATCAAATTCGAGGGTTCAAAATCTCAACTCAAAGCTTCTCCGAGCAAAAGCCAAGTTGGAAGATGTATCTGCATCCGAAGAGAAAGAAAAATCGATTGTGTCCAATCTATCTGTCACTCTTGACAAGCTCAAGGTAGAAGCAGAAGCTGCAAAGAAAGAAAAGGAGCTTGTCTGCGAAGAGACTGCAAGCATCAAGTCCGAAATTCTGAAAATGGAATTGGAGATAGAATCAACCGAGGAAAAGTTACAGGCTACAATGCAGGAGCTTGAAACAGTCAAATCATCCGAAGCTGTAGCGCTTGAAAATCTCAAAACTCTGATTGAGAACACCGTACGAGCTAGAGCTTTTGAGTCACAGAGTAGTTCTTCAATTACCATATCCAAGTTTGAACACGAGTACCTGACTGGACGTGCAGTCGCAGCTGAAGGAATTGCGGATAAAAAGGTAGCAGAAGCTCAGGCATGGGTTGAAGCTCTAAGGGCCAGTGAGAAGGAAATACTGATAAGGACAGACTTAACTATGAGAGATCTTAAAAAGATGAGAGTGGACGAAGAGCAAGGAGAAGAACAAAACTGGGGACAAAAAGGGGAAAGAAATGTAGTATCTGGAAACTGGCAACAAGCCACACCTAGAAAGGCTATGAAAAGTAATGGATACCAGACTCCATACAGGCGGGCGAGGTATAGAAAATCTGCTTCTCCTGGAGCTCGGAATAATTTCCCCATTCAAAAGAAAAAGAAGGTGATGCCTAATCTGACTAAGTTATTCAGTGGTAAGAAAACTGCCAAAGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

384

Amino Acids

43.62

Weight (kDa)

7.64

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WEMBL	PF05701	5 - 300	1.5e-18	Weak chloroplast movement under blue light

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66840 AT1G66840 AT5G38150
fragaria_vesca	FvH4_1g25551
malus_domestica	MD09G1256700.v1.1 MD17G1250200.v1.1
prunus_persica	Prupe.3G148500_v2.0.a1 Prupe.3G148500_v2.0.a1 Prupe.3G148500_v2.0.a1
pyrus_communis	pycom09g17230 pycom17g25360 pycom17g25390 pycom17g25400
rosa_chinensis	RchiOBHm_Chr2g0123711
rosa_laevigata	RLG00000018771
rosa_multiflora	Rmu_sc0002870.1_g000003 Rmu_sc0021381.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120400
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306500 Rh2BG314900 Rh2CG292900 Rh2DG330200
rosa_wichuraiana	Rw2G024590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	293
AciI	CCGC	3 cut(s)	227, 788, 1027
AcsI	RAATTY	2 cut(s)	358, 555
AcuI	CTGAAG	1 cut(s)	798
AfaI	GTAC	3 cut(s)	272, 687, 752
AfeI	AGCGCT	1 cut(s)	651
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	8 cut(s)	128, 371, 623, 656, 723, 743, 824, 1082
AhdI	GACNNNNNGTC	1 cut(s)	767
AjiI	CACGTC	1 cut(s)	764
AjnI	CCWGG	1 cut(s)	1054
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
Alw21I	GWGCWC	1 cut(s)	1063
Alw26I	GTCTC	2 cut(s)	30, 527
AlwNI	CAGNNNCTG	1 cut(s)	500
Aor51HI	AGCGCT	1 cut(s)	651
AoxI	GGCC	2 cut(s)	276, 834
ApeKI	GCWGC	3 cut(s)	245, 500, 773
ApoI	RAATTY	2 cut(s)	358, 555
Asp700I	GAANNNNTTC	2 cut(s)	264, 1070
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	1 cut(s)	834
AsuHPI	GGTGA	1 cut(s)	1108
BaeI	ACNNNNGTAYC	2 cut(s)	734, 767
BanII	GRGCYC	1 cut(s)	1063
BauI	CACGAG	1 cut(s)	746
BbsI	GAAGAC	2 cut(s)	183, 347
Bbv12I	GWGCWC	1 cut(s)	1063
BbvI	GCAGC	3 cut(s)	232, 487, 785
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	1 cut(s)	1056
BciVI	GTATCC	1 cut(s)	1001
BcoDI	GTCTC	2 cut(s)	30, 527
BfaI	CTAG	2 cut(s)	693, 984
BfmI	CTRYAG	2 cut(s)	246, 645
BfoI	RGCGCY	1 cut(s)	653
BfuI	GTATCC	1 cut(s)	1001
BglII	AGATCT	1 cut(s)	880
BisI	GCNGC	3 cut(s)	246, 501, 774
BlsI	GCNGC	3 cut(s)	247, 502, 775
Bme1390I	CCNGG	1 cut(s)	1056
BmeRI	GACNNNNNGTC	1 cut(s)	767
BmgBI	CACGTC	1 cut(s)	764
BmgT120I	GGNCC	1 cut(s)	834
BmrFI	CCNGG	1 cut(s)	1056
BmrI	ACTGGG	2 cut(s)	153, 937
BmsI	GCATC	3 cut(s)	434, 552, 1089
BmuI	ACTGGG	2 cut(s)	153, 937
BpiI	GAAGAC	2 cut(s)	183, 347
BpmI	CTGGAG	1 cut(s)	1077
Bpu10I	CCTNAGC	1 cut(s)	810
BpuEI	CTTGAG	4 cut(s)	16, 163, 242, 467
Bsa29I	ATCGAT	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	282, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	5 cut(s)	159, 763, 837, 932, 971
BseBI	CCWGG	1 cut(s)	1056
BseCI	ATCGAT	1 cut(s)	446
BseDI	CCNNGG	2 cut(s)	282, 588
BseGI	GGATG	3 cut(s)	292, 425, 635
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	204, 824
BseNI	ACTGG	5 cut(s)	159, 763, 837, 932, 971
BseXI	GCAGC	3 cut(s)	232, 487, 785
BsgI	GTGCAG	1 cut(s)	786
BshFI	GGCC	2 cut(s)	278, 836
BshVI	ATCGAT	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	1063
BsiWI	CGTACG	1 cut(s)	685
BslFI	GGGAC	1 cut(s)	945
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	2 cut(s)	30, 527
BsmFI	GGGAC	1 cut(s)	945
BsnI	GGCC	2 cut(s)	278, 836
Bso31I	GGTCTC	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	1063
Bsp143I	GATC	1 cut(s)	880
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	3 cut(s)	227, 788, 1027
BspANI	GGCC	2 cut(s)	278, 836
BspCNI	CTCAG	2 cut(s)	203, 823
BspDI	ATCGAT	1 cut(s)	446
BspMAI	CTGCAG	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	900
BspTNI	GGTCTC	1 cut(s)	30
BsrI	ACTGG	5 cut(s)	159, 763, 837, 932, 971
BssECI	CCNNGG	2 cut(s)	282, 588
BssMI	GATC	1 cut(s)	880
BssSI	CACGAG	1 cut(s)	746
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	746
Bst2UI	CCWGG	1 cut(s)	1056
Bst4CI	ACNGT	3 cut(s)	204, 628, 685
Bst6I	CTCTTC	4 cut(s)	342, 426, 525, 900
BstAPI	GCANNNNNTGC	2 cut(s)	82, 500
BstC8I	GCNNGC	2 cut(s)	541, 1029
BstDEI	CTNAG	4 cut(s)	190, 810, 830, 1113
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	3 cut(s)	292, 425, 635
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	1 cut(s)	883
BstMAI	GTCTC	2 cut(s)	30, 527
BstMBI	GATC	1 cut(s)	880
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 500, 773, 833
BstNI	CCWGG	1 cut(s)	1056
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	1054
BstSFI	CTRYAG	2 cut(s)	246, 645
BstV1I	GCAGC	3 cut(s)	232, 487, 785
BstV2I	GAAGAC	2 cut(s)	183, 347
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
Bsu15I	ATCGAT	1 cut(s)	446
BsuI	GTATCC	1 cut(s)	1001
BsuRI	GGCC	2 cut(s)	278, 836
BsuTUI	ATCGAT	1 cut(s)	446
BtgI	CCRYGG	1 cut(s)	282
BtrI	CACGTC	1 cut(s)	764
BtsCI	GGATG	3 cut(s)	292, 425, 635
BtsIMutI	CAGTG	2 cut(s)	844, 1129
Cac8I	GCNNGC	2 cut(s)	541, 1029
CaiI	CAGNNNCTG	1 cut(s)	500
CfoI	GCGC	1 cut(s)	652
Cfr13I	GGNCC	1 cut(s)	834
ClaI	ATCGAT	1 cut(s)	446
Csp6I	GTAC	3 cut(s)	271, 686, 751
CviAII	CATG	4 cut(s)	77, 274, 283, 816
CviQI	GTAC	3 cut(s)	271, 686, 751
DdeI	CTNAG	4 cut(s)	190, 810, 830, 1113
DpnI	GATC	1 cut(s)	882
DpnII	GATC	1 cut(s)	880
DriI	GACNNNNNGTC	1 cut(s)	767
Eam1104I	CTCTTC	4 cut(s)	342, 426, 525, 900
Eam1105I	GACNNNNNGTC	1 cut(s)	767
EarI	CTCTTC	4 cut(s)	342, 426, 525, 900
Ecl136II	GAGCTC	1 cut(s)	1061
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	1063
Eco31I	GGTCTC	1 cut(s)	30
Eco47III	AGCGCT	1 cut(s)	651
Eco53kI	GAGCTC	1 cut(s)	1061
Eco57I	CTGAAG	1 cut(s)	798
EcoICRI	GAGCTC	1 cut(s)	1061
EcoRII	CCWGG	1 cut(s)	1054
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	1063
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	4 cut(s)	80, 277, 286, 819
FaqI	GGGAC	1 cut(s)	945
FatI	CATG	4 cut(s)	76, 273, 282, 815
FauI	CCCGC	2 cut(s)	220, 1020
Fnu4HI	GCNGC	3 cut(s)	246, 501, 774
FokI	GGATG	3 cut(s)	299, 412, 622
FriOI	GRGCYC	1 cut(s)	1063
Fsp4HI	GCNGC	3 cut(s)	246, 501, 774
FspBI	CTAG	2 cut(s)	693, 984
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	3 cut(s)	246, 501, 774
GsuI	CTGGAG	1 cut(s)	1077
HaeII	RGCGCY	1 cut(s)	653
HaeIII	GGCC	2 cut(s)	278, 836
HhaI	GCGC	1 cut(s)	652
Hin1II	CATG	4 cut(s)	80, 277, 286, 819
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	5 cut(s)	124, 145, 581, 704, 1015
HphI	GGTGA	1 cut(s)	1108
Hpy166II	GTNNAC	1 cut(s)	901
Hpy188III	TCNNGA	3 cut(s)	33, 473, 960
Hpy8I	GTNNAC	1 cut(s)	901
HpyAV	CCTTC	4 cut(s)	179, 773, 838, 1087
HpyCH4III	ACNGT	3 cut(s)	204, 628, 685
HpyCH4IV	ACGT	1 cut(s)	763
HpyCH4V	TGCA	8 cut(s)	76, 85, 248, 425, 503, 539, 613, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 500, 773, 833
HpyF3I	CTNAG	4 cut(s)	190, 810, 830, 1113
HpySE526I	ACGT	1 cut(s)	763
Hsp92II	CATG	4 cut(s)	80, 277, 286, 819
HspAI	GCGC	1 cut(s)	650
Kzo9I	GATC	1 cut(s)	880
LguI	GCTCTTC	1 cut(s)	900
LmnI	GCTCC	3 cut(s)	517, 616, 1058
Lsp1109I	GCAGC	3 cut(s)	232, 487, 785
LweI	GCATC	3 cut(s)	434, 552, 1089
MaeI	CTAG	2 cut(s)	693, 984
MaeII	ACGT	1 cut(s)	763
MaeIII	GTNAC	6 cut(s)	58, 198, 208, 466, 597, 705
MalI	GATC	1 cut(s)	882
MboI	GATC	1 cut(s)	880
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	1063
MluCI	AATT	7 cut(s)	239, 358, 555, 569, 723, 783, 1069
MlyI	GAGTC	3 cut(s)	154, 713, 1009
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	7 cut(s)	50, 166, 217, 289, 357, 583, 1026
MroXI	GAANNNNTTC	2 cut(s)	264, 1070
MseI	TTAA	6 cut(s)	15, 105, 314, 335, 869, 885
MspA1I	CMGCKG	1 cut(s)	776
MspR9I	CCNGG	1 cut(s)	1056
MvaI	CCWGG	1 cut(s)	1056
MwoI	GCNNNNNNNGC	4 cut(s)	82, 500, 773, 833
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	1 cut(s)	880
NlaIII	CATG	4 cut(s)	80, 277, 286, 819
NmuCI	GTSAC	3 cut(s)	58, 466, 705
NspI	RCATGY	1 cut(s)	80
PciSI	GCTCTTC	1 cut(s)	900
PdmI	GAANNNNTTC	2 cut(s)	264, 1070
PfeI	GAWTC	2 cut(s)	124, 581
Pfl23II	CGTACG	1 cut(s)	685
PfoI	TCCNGGA	1 cut(s)	1054
PkrI	GCNGC	3 cut(s)	247, 502, 775
PleI	GAGTC	3 cut(s)	153, 712, 1009
PpsI	GAGTC	3 cut(s)	153, 712, 1009
PsiI	TTATAA	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	1063
Psp6I	CCWGG	1 cut(s)	1054
PspGI	CCWGG	1 cut(s)	1054
PspLI	CGTACG	1 cut(s)	685
PspPI	GGNCC	1 cut(s)	834
PstI	CTGCAG	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	3 cut(s)	272, 687, 752
RsaNI	GTAC	3 cut(s)	271, 686, 751
SacI	GAGCTC	1 cut(s)	1063
SapI	GCTCTTC	1 cut(s)	900
SaqAI	TTAA	6 cut(s)	15, 105, 314, 335, 869, 885
SatI	GCNGC	3 cut(s)	246, 501, 774
Sau3AI	GATC	1 cut(s)	880
Sau96I	GGNCC	1 cut(s)	834
SchI	GAGTC	3 cut(s)	154, 713, 1009
ScrFI	CCNGG	1 cut(s)	1056
SduI	GDGCHC	1 cut(s)	1063
SfaNI	GCATC	3 cut(s)	434, 552, 1089
SfcI	CTRYAG	2 cut(s)	246, 645
SmlI	CTYRAG	4 cut(s)	31, 142, 221, 482
SmoI	CTYRAG	4 cut(s)	31, 142, 221, 482
Sse9I	AATT	7 cut(s)	239, 358, 555, 569, 723, 783, 1069
SsiI	CCGC	3 cut(s)	227, 788, 1027
SspMI	CTAG	2 cut(s)	693, 984
SstI	GAGCTC	1 cut(s)	1063
StyD4I	CCNGG	1 cut(s)	1054
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	204, 628, 685
TaiI	ACGT	1 cut(s)	766
TaqI	TCGA	3 cut(s)	42, 362, 446
TasI	AATT	7 cut(s)	239, 358, 555, 569, 723, 783, 1069
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	124, 581
Tru1I	TTAA	6 cut(s)	15, 105, 314, 335, 869, 885
Tru9I	TTAA	6 cut(s)	15, 105, 314, 335, 869, 885
TscAI	CASTG	2 cut(s)	844, 1129
TseFI	GTSAC	3 cut(s)	58, 466, 705
TseI	GCWGC	3 cut(s)	245, 500, 773
Tsp45I	GTSAC	3 cut(s)	58, 466, 705
TspDTI	ATGAA	2 cut(s)	105, 1010
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	2 cut(s)	844, 1129
XapI	RAATTY	2 cut(s)	358, 555
XceI	RCATGY	1 cut(s)	80
XmnI	GAANNNNTTC	2 cut(s)	264, 1070
XspI	CTAG	2 cut(s)	693, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.