Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021381.1

Orthogroup ID

OG0007774

Physical Location & Seq

Genomic Coordinates Reverse (-)

2461 .. 3342

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021381.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgaagcatatcacagatcagacagctcggataaagaaggcagaggataaagcagatttaactgttcaaaatctcaattcaaagcttctcagagccaaagccaagttggaagctgtatctgcatctgaagaaaaagcaaaatcaattcaatccagtctctcactcactctcgaacagcttaagacagatgttgatgccgcaaacaaagagaaggagcatgccagtgaagaagctgcaaccattaagtcagaaatactcaagattgaatcggatatagacatagctgaggaaaaatttgaggctgcaatgcaagagcttgaagcagtaaaatcttcagaggctgtagctcttgaaaacctcaaaacacttattgagaataccatgagagctagagcttctgcagctcagaatagttcttcaattaccatatccaagtttgaatatgagtacttgactggacgtgcagttggggctgaagaaattgctgataaaaaggtagcagctgctcaggcttgggttgaagctataaaggccagtgagaaggaaatattgataaagatagacttagctgagaaagagctgaaagaaacgagggtggaggaggtacaggaagaggcctctagacctggaagacaaccttctggacagaggatgcttgagggacaagaattacaaatttggagacaaaagagggacagaaatgcagcatctggaaaccggcgaagtaatggaaatttaactccatcaaggcgagccaagttccgaaaatctgcctctcctggagctcggtatatgaataatttccccattcagaaaaagacgaaggtaatgcctaatctgggcaagttttttgggggtaagagaactgcaaaagatgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

293

Amino Acids

32.57

Weight (kDa)

9.28

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66840 AT1G66840 AT5G38150
fragaria_vesca	FvH4_1g25551
malus_domestica	MD09G1256700.v1.1 MD17G1250200.v1.1
prunus_persica	Prupe.3G148500_v2.0.a1 Prupe.3G148500_v2.0.a1 Prupe.3G148500_v2.0.a1
pyrus_communis	pycom09g17230 pycom17g25360 pycom17g25390 pycom17g25400
rosa_chinensis	RchiOBHm_Chr2g0123711
rosa_laevigata	RLG00000018771
rosa_multiflora	Rmu_sc0002870.1_g000003 Rmu_sc0021381.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120400
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306500 Rh2BG314900 Rh2CG292900 Rh2DG330200
rosa_wichuraiana	Rw2G024590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AcsI	RAATTY	3 cut(s)	293, 675, 733
AcuI	CTGAAG	3 cut(s)	147, 318, 495
AfaI	GTAC	2 cut(s)	449, 606
AfiI	CCNNNNNNNGG	1 cut(s)	839
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	9 cut(s)	68, 81, 149, 266, 320, 353, 420, 440, 521
AjiI	CACGTC	1 cut(s)	461
AjnI	CCWGG	2 cut(s)	625, 778
Alw21I	GWGCWC	1 cut(s)	787
Alw26I	GTCTC	2 cut(s)	161, 676
AlwNI	CAGNNNCTG	2 cut(s)	341, 710
AoxI	GGCC	2 cut(s)	531, 615
ApeKI	GCWGC	6 cut(s)	233, 302, 401, 500, 503, 704
ApoI	RAATTY	3 cut(s)	293, 675, 733
Asp700I	GAANNNNTTC	1 cut(s)	800
BanII	GRGCYC	1 cut(s)	787
BbsI	GAAGAC	1 cut(s)	637
Bbv12I	GWGCWC	1 cut(s)	787
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	6 cut(s)	220, 289, 413, 490, 512, 716
BccI	CCATC	1 cut(s)	751
BcgI	CGANNNNNNTGC	2 cut(s)	811, 845
BciT130I	CCWGG	2 cut(s)	627, 780
BcoDI	GTCTC	2 cut(s)	161, 676
BfaI	CTAG	2 cut(s)	390, 621
BfmI	CTRYAG	2 cut(s)	342, 399
BfrI	CTTAAG	1 cut(s)	179
BisI	GCNGC	7 cut(s)	198, 234, 303, 402, 501, 504, 705
BlsI	GCNGC	7 cut(s)	199, 235, 304, 403, 502, 505, 706
BmcAI	AGTACT	1 cut(s)	449
Bme1390I	CCNGG	2 cut(s)	627, 780
BmgBI	CACGTC	1 cut(s)	461
BmrFI	CCNGG	2 cut(s)	627, 780
BmsI	GCATC	4 cut(s)	131, 184, 642, 716
BpiI	GAAGAC	1 cut(s)	637
BpmI	CTGGAG	1 cut(s)	801
Bpu10I	CCTNAGC	2 cut(s)	285, 507
BpuEI	CTTGAG	2 cut(s)	242, 677
Bsc4I	CCNNNNNNNGG	1 cut(s)	839
Bse118I	RCCGGY	1 cut(s)	717
Bse1I	ACTGG	4 cut(s)	153, 222, 460, 534
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	627, 780
BseGI	GGATG	1 cut(s)	657
BseLI	CCNNNNNNNGG	1 cut(s)	839
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	5 cut(s)	103, 276, 419, 521, 561
BseNI	ACTGG	4 cut(s)	153, 222, 460, 534
BseRI	GAGGAG	1 cut(s)	614
BseXI	GCAGC	6 cut(s)	220, 289, 413, 490, 512, 716
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	2 cut(s)	533, 617
BsiHKAI	GWGCWC	1 cut(s)	787
BsiSI	CCGG	1 cut(s)	718
BslFI	GGGAC	2 cut(s)	675, 707
BslI	CCNNNNNNNGG	1 cut(s)	839
BsmAI	GTCTC	2 cut(s)	161, 676
BsmFI	GGGAC	2 cut(s)	675, 707
BsnI	GGCC	2 cut(s)	533, 617
Bsp1286I	GDGCHC	1 cut(s)	787
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	2 cut(s)	533, 617
BspCNI	CTCAG	5 cut(s)	102, 277, 418, 520, 562
BspMAI	CTGCAG	1 cut(s)	403
BspTI	CTTAAG	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	717
BsrI	ACTGG	4 cut(s)	153, 222, 460, 534
BssAI	RCCGGY	1 cut(s)	717
BssMI	GATC	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	627, 780
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	606
BstAFI	CTTAAG	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	219, 753
BstDEI	CTNAG	6 cut(s)	89, 285, 405, 507, 565, 570
BstF5I	GGATG	1 cut(s)	657
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	2 cut(s)	161, 676
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 401, 470, 509, 530
BstNI	CCWGG	2 cut(s)	627, 780
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	625, 778
BstSFI	CTRYAG	2 cut(s)	342, 399
BstV1I	GCAGC	6 cut(s)	220, 289, 413, 490, 512, 716
BstV2I	GAAGAC	1 cut(s)	637
BsuRI	GGCC	2 cut(s)	533, 617
BtrI	CACGTC	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	657
BtsIMutI	CAGTG	2 cut(s)	229, 541
Cac8I	GCNNGC	2 cut(s)	219, 753
CaiI	CAGNNNCTG	2 cut(s)	341, 710
Cfr10I	RCCGGY	1 cut(s)	717
Csp6I	GTAC	2 cut(s)	448, 605
CviAII	CATG	2 cut(s)	218, 382
CviQI	GTAC	2 cut(s)	448, 605
DdeI	CTNAG	6 cut(s)	89, 285, 405, 507, 565, 570
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Ecl136II	GAGCTC	1 cut(s)	785
Eco147I	AGGCCT	1 cut(s)	617
Eco24I	GRGCYC	1 cut(s)	787
Eco53kI	GAGCTC	1 cut(s)	785
Eco57I	CTGAAG	3 cut(s)	147, 318, 495
EcoICRI	GAGCTC	1 cut(s)	785
EcoRII	CCWGG	2 cut(s)	625, 778
EcoT38I	GRGCYC	1 cut(s)	787
FaeI	CATG	2 cut(s)	221, 385
FalI	AAGNNNNNCTT	4 cut(s)	548, 580, 622, 654
FaqI	GGGAC	2 cut(s)	675, 707
FatI	CATG	2 cut(s)	217, 381
Fnu4HI	GCNGC	7 cut(s)	198, 234, 303, 402, 501, 504, 705
FokI	GGATG	1 cut(s)	664
FriOI	GRGCYC	1 cut(s)	787
Fsp4HI	GCNGC	7 cut(s)	198, 234, 303, 402, 501, 504, 705
FspBI	CTAG	2 cut(s)	390, 621
GluI	GCNGC	7 cut(s)	198, 234, 303, 402, 501, 504, 705
GsuI	CTGGAG	1 cut(s)	801
HaeIII	GGCC	2 cut(s)	533, 617
HapII	CCGG	1 cut(s)	718
Hin1II	CATG	2 cut(s)	221, 385
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	718
Hpy188III	TCNNGA	6 cut(s)	170, 259, 350, 621, 642, 711
HpyAV	CCTTC	5 cut(s)	31, 205, 535, 648, 817
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	8 cut(s)	122, 236, 305, 310, 401, 464, 704, 869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 401, 470, 509, 530
HpyF3I	CTNAG	6 cut(s)	89, 285, 405, 507, 565, 570
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	2 cut(s)	221, 385
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	214, 782
Lsp1109I	GCAGC	6 cut(s)	220, 289, 413, 490, 512, 716
LweI	GCATC	4 cut(s)	131, 184, 642, 716
MaeI	CTAG	2 cut(s)	390, 621
MaeII	ACGT	1 cut(s)	460
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	7 cut(s)	140, 239, 324, 408, 488, 623, 642
MhlI	GDGCHC	1 cut(s)	787
MluCI	AATT	9 cut(s)	76, 144, 293, 420, 480, 668, 675, 733, 799
MmeI	TCCRAC	1 cut(s)	87
MroXI	GAANNNNTTC	1 cut(s)	800
MseI	TTAA	4 cut(s)	59, 180, 243, 737
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	503
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	1 cut(s)	718
MspR9I	CCNGG	2 cut(s)	627, 780
MvaI	CCWGG	2 cut(s)	627, 780
MwoI	GCNNNNNNNGC	5 cut(s)	119, 401, 470, 509, 530
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	2 cut(s)	221, 385
NspI	RCATGY	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	221
PceI	AGGCCT	1 cut(s)	617
PdmI	GAANNNNTTC	1 cut(s)	800
PfeI	GAWTC	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	778
PkrI	GCNGC	7 cut(s)	199, 235, 304, 403, 502, 505, 706
Psp124BI	GAGCTC	1 cut(s)	787
Psp6I	CCWGG	2 cut(s)	625, 778
PspGI	CCWGG	2 cut(s)	625, 778
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	2 cut(s)	341, 710
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	2 cut(s)	449, 606
RsaNI	GTAC	2 cut(s)	448, 605
RseI	CAYNNNNRTG	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	787
SaqAI	TTAA	4 cut(s)	59, 180, 243, 737
SatI	GCNGC	7 cut(s)	198, 234, 303, 402, 501, 504, 705
Sau3AI	GATC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	449
ScrFI	CCNGG	2 cut(s)	627, 780
SduI	GDGCHC	1 cut(s)	787
SfaNI	GCATC	4 cut(s)	131, 184, 642, 716
SfcI	CTRYAG	2 cut(s)	342, 399
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	3 cut(s)	179, 257, 656
SmoI	CTYRAG	3 cut(s)	179, 257, 656
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	9 cut(s)	76, 144, 293, 420, 480, 668, 675, 733, 799
SseBI	AGGCCT	1 cut(s)	617
SsiI	CCGC	1 cut(s)	198
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	2 cut(s)	390, 621
SstI	GAGCTC	1 cut(s)	787
StuI	AGGCCT	1 cut(s)	617
StyD4I	CCNGG	2 cut(s)	625, 778
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	1 cut(s)	171
TasI	AATT	9 cut(s)	76, 144, 293, 420, 480, 668, 675, 733, 799
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	4 cut(s)	59, 180, 243, 737
Tru9I	TTAA	4 cut(s)	59, 180, 243, 737
TscAI	CASTG	2 cut(s)	229, 541
TseI	GCWGC	6 cut(s)	233, 302, 401, 500, 503, 704
TspDTI	ATGAA	2 cut(s)	17, 809
TspRI	CASTG	2 cut(s)	229, 541
Vha464I	CTTAAG	1 cut(s)	179
XapI	RAATTY	3 cut(s)	293, 675, 733
XbaI	TCTAGA	1 cut(s)	620
XceI	RCATGY	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	800
XspI	CTAG	2 cut(s)	390, 621
ZrmI	AGTACT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.