Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007774

Physical Location & Seq

Genomic Coordinates Reverse (-)

52607572 .. 52615555

Gene Structure 7984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00120400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGAGCAGAAGAAGATTTGGGTCAGTTCGATCTGCTAACAATCTAATATATGGAGATAGAACACTTGAAGGTAGTCCTTGTCCTTTGCTCAAGAGACAACAGCCCCCATTTGATTCCCCAGAGTCCCCTTCAAGAGCAAGAGAACTCCATATGGCACGGAGGGACATAGGTCGATACAGAGAAACCAGAATTGACACAGACTCGGTCAAAGAACAGGCACAAATTGAGTTATATGATGCAAAGAAGATAGCCAAAGATCTCTCCTCAGTAATCGAGGAATCAAACTTGATGGCCAGAGGACACACGAGAGAGATTGAAGCACTAAGGAGACCGAGAAGGCGTGGAGATAATCGAGTATTATTGCCTGTTGGGAATGATCATGTGGAGAAAAACAAAAATTATGAACAAGTCATGAGAGAATTGCAGCTTTTGAAACAGGAACTGAGCATGCTCAAGATCGATATGGCTAATGTTTTGGAAGAGAAATCGCAGGCAGAGAAGCAAGCAGAAGCCGCAAATGAAAAGATGATGTTTTATACAAGCTCGGCGGAAGCTATCAGGAAGGAGATTGAGGAAGCTGATGAAGAGCAAGTGCTAGTTGAGTTGGCTCAGATAGAAGCCTTGAAAGAATTTGGAGATATTGAAGCTCAGAGACAACAAGAAGCCAATCAACTCTCATCTGCAGTGGAGGAAACCAGGAAAAAAGTGAAAGATATTACTGAAGAGATTGATCACTCAAAACAAGTTGAAACCGAATTGTCTGTCACATTGTCTAATGTCGATGCGTTACGGAATGAACTACATCTAGTTAAAGGAATGGACAAAAGTAGTAGTCAAATGACTGATAGCTTTCAGCTTTCGGAAACCAGTCTCCAAAGAGCAGAGGACTCGGAAGCTTCACCCTTGTTACACTCAATCACAGAAGAACTAGAGGCGGCAAAGAAAGAACTGGCTGCAGTAAAGGAAGAAGGATTCCAGTACATGGCCTCCATGGATGTTATAAGAAACGAGATGAAGCATATCACAGATCAGACAGCTCGGATAAAGAAGGCAGAGGATAAAGCAGATTTAACTGTTCAAACTCTCAATTCAAAGTTTCTCAGAGCCAAAGCCAAGTTGGAAGCTTTATGTGCATCTGAAGAAAAAGCAAAATCAATTCAATCTAGTCTCTCACTCACTCTTGAACAGCTTAAGACAGATGCTGATGCCGCAAACAAAGAGAAGGAGCATGCCAGTGAAGAAGCTGCAACCATTAAGTCGGAAATACTCAAGATTGAATCGGATATAGACATAGCTGAGGAAAAATTTGAGGCTGCAATGCAAGAGCTTGAAGCAGTAAAATCTTCAGAGGCTGTAGCTCTTGAAAACCTCAAAACACTTATTGAGAATACCATGAGAGCTAGAGCTTCTGCAGCTCAGAATAGTTCTTCAATTACCATATCCAAGTTTGAATATGAGTACTTGACTGGACGTGCAGTTGGGGCTGAAGAAATTGCTGATAAAAGGTGGCAGCTGCTCAGGCTTGGGTTGAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

512

Amino Acids

57.9

Weight (kDa)

5.21

Isoelectric Point (pI)

61.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WEMBL	PF05701	47 - 502	1.3e-20	Weak chloroplast movement under blue light

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66840 AT1G66840 AT5G38150
fragaria_vesca	FvH4_1g25551
malus_domestica	MD09G1256700.v1.1 MD17G1250200.v1.1
prunus_persica	Prupe.3G148500_v2.0.a1 Prupe.3G148500_v2.0.a1 Prupe.3G148500_v2.0.a1
pyrus_communis	pycom09g17230 pycom17g25360 pycom17g25390 pycom17g25400
rosa_chinensis	RchiOBHm_Chr2g0123711
rosa_laevigata	RLG00000018771
rosa_multiflora	Rmu_sc0002870.1_g000003 Rmu_sc0021381.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120400
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306500 Rh2BG314900 Rh2CG292900 Rh2DG330200
rosa_wichuraiana	Rw2G024590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1001
AccB7I	CCANNNNNTGG	1 cut(s)	982
AciI	CCGC	4 cut(s)	513, 548, 935, 1209
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	2 cut(s)	629, 1304
AcuI	CTGAAG	4 cut(s)	741, 1158, 1329, 1506
AfaI	GTAC	2 cut(s)	980, 1460
AfiI	CCNNNNNNNGG	1 cut(s)	982
AflII	CTTAAG	1 cut(s)	1190
AjiI	CACGTC	1 cut(s)	1472
AjnI	CCWGG	1 cut(s)	695
Alw26I	GTCTC	5 cut(s)	88, 322, 646, 875, 1172
AlwNI	CAGNNNCTG	3 cut(s)	442, 1202, 1352
AoxI	GGCC	2 cut(s)	291, 984
ApeKI	GCWGC	7 cut(s)	424, 953, 1244, 1313, 1412, 1510, 1513
ApoI	RAATTY	2 cut(s)	629, 1304
ArsI	GACNNNNNNTTYG	2 cut(s)	747, 779
AsuHPI	GGTGA	1 cut(s)	891
BalI	TGGCCA	1 cut(s)	293
BauI	CACGAG	1 cut(s)	304
BbvCI	CCTCAGC	1 cut(s)	1296
BbvI	GCAGC	7 cut(s)	436, 940, 1231, 1300, 1424, 1500, 1522
BccI	CCATC	1 cut(s)	283
BcgI	CGANNNNNNTGC	2 cut(s)	870, 904
BciT130I	CCWGG	1 cut(s)	697
BclI	TGATCA	2 cut(s)	376, 730
BcoDI	GTCTC	5 cut(s)	88, 322, 646, 875, 1172
BfaI	CTAG	5 cut(s)	596, 806, 929, 1164, 1401
BfmI	CTRYAG	4 cut(s)	681, 954, 1353, 1410
BfrI	CTTAAG	1 cut(s)	1190
BglII	AGATCT	1 cut(s)	256
BmcAI	AGTACT	1 cut(s)	1460
Bme1390I	CCNGG	1 cut(s)	697
BmgBI	CACGTC	1 cut(s)	1472
BmrFI	CCNGG	1 cut(s)	697
BmsI	GCATC	5 cut(s)	226, 772, 1142, 1189, 1195
BoxI	GACNNNNGTC	1 cut(s)	168
Bpu10I	CCTNAGC	2 cut(s)	1296, 1517
BpuEI	CTTGAG	3 cut(s)	74, 437, 1253
Bsa29I	ATCGAT	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	990
BsaXI	ACNNNNNCTCC	2 cut(s)	971, 1001
Bsc4I	CCNNNNNNNGG	1 cut(s)	982
Bse1I	ACTGG	5 cut(s)	867, 954, 976, 1233, 1471
Bse3DI	GCAATG	1 cut(s)	1323
BseBI	CCWGG	1 cut(s)	697
BseCI	ATCGAT	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	990
BseGI	GGATG	1 cut(s)	1000
BseLI	CCNNNNNNNGG	1 cut(s)	982
BseMI	GCAATG	1 cut(s)	1323
BseMII	CTCAG	8 cut(s)	279, 434, 623, 662, 1114, 1287, 1430, 1531
BseNI	ACTGG	5 cut(s)	867, 954, 976, 1233, 1471
BseRI	GAGGAG	1 cut(s)	253
BseXI	GCAGC	7 cut(s)	436, 940, 1231, 1300, 1424, 1500, 1522
BsgI	GTGCAG	1 cut(s)	1494
BshFI	GGCC	2 cut(s)	293, 986
BshVI	ATCGAT	1 cut(s)	459
BslFI	GGGAC	2 cut(s)	109, 176
BslI	CCNNNNNNNGG	1 cut(s)	982
BsmAI	GTCTC	5 cut(s)	88, 322, 646, 875, 1172
BsmFI	GGGAC	2 cut(s)	109, 176
BsnI	GGCC	2 cut(s)	293, 986
Bso31I	GGTCTC	1 cut(s)	322
Bsp143I	GATC	6 cut(s)	29, 256, 376, 456, 730, 1027
Bsp19I	CCATGG	1 cut(s)	990
BspACI	CCGC	4 cut(s)	513, 548, 935, 1209
BspANI	GGCC	2 cut(s)	293, 986
BspCNI	CTCAG	8 cut(s)	278, 435, 622, 661, 1113, 1288, 1429, 1530
BspDI	ATCGAT	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	411
BspMAI	CTGCAG	3 cut(s)	685, 958, 1414
BspQI	GCTCTTC	1 cut(s)	579
BspTI	CTTAAG	1 cut(s)	1190
BspTNI	GGTCTC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	1323
BsrI	ACTGG	5 cut(s)	867, 954, 976, 1233, 1471
BssECI	CCNNGG	1 cut(s)	990
BssMI	GATC	6 cut(s)	29, 256, 376, 456, 730, 1027
BssSI	CACGAG	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	990
Bst2BI	CACGAG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	697
Bst4CI	ACNGT	1 cut(s)	1075
Bst6I	CTCTTC	3 cut(s)	474, 579, 717
BstAFI	CTTAAG	1 cut(s)	1190
BstC8I	GCNNGC	4 cut(s)	449, 492, 504, 1230
BstDEI	CTNAG	9 cut(s)	265, 323, 443, 609, 648, 1100, 1296, 1416, 1517
BstDSI	CCRYGG	1 cut(s)	990
BstF5I	GGATG	1 cut(s)	1000
BstKTI	GATC	6 cut(s)	32, 259, 379, 459, 733, 1030
BstMAI	GTCTC	5 cut(s)	88, 322, 646, 875, 1172
BstMBI	GATC	6 cut(s)	29, 256, 376, 456, 730, 1027
BstMWI	GCNNNNNNNGC	6 cut(s)	512, 1130, 1208, 1412, 1481, 1519
BstNI	CCWGG	1 cut(s)	697
BstNSI	RCATGY	2 cut(s)	451, 1232
BstPAI	GACNNNNGTC	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	695
BstSFI	CTRYAG	4 cut(s)	681, 954, 1353, 1410
BstV1I	GCAGC	7 cut(s)	436, 940, 1231, 1300, 1424, 1500, 1522
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	293, 986
BsuTUI	ATCGAT	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	990
BtrI	CACGTC	1 cut(s)	1472
BtsCI	GGATG	1 cut(s)	1000
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	2 cut(s)	690, 1240
Cac8I	GCNNGC	4 cut(s)	449, 492, 504, 1230
CaiI	CAGNNNCTG	3 cut(s)	442, 1202, 1352
CciI	TCATGA	1 cut(s)	411
ClaI	ATCGAT	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	979, 1459
CviAII	CATG	7 cut(s)	380, 412, 448, 982, 991, 1229, 1393
CviQI	GTAC	2 cut(s)	979, 1459
DdeI	CTNAG	9 cut(s)	265, 323, 443, 609, 648, 1100, 1296, 1416, 1517
DpnI	GATC	6 cut(s)	31, 258, 378, 458, 732, 1029
DpnII	GATC	6 cut(s)	29, 256, 376, 456, 730, 1027
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	3 cut(s)	474, 579, 717
EarI	CTCTTC	3 cut(s)	474, 579, 717
EciI	GGCGGA	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	990
Eco31I	GGTCTC	1 cut(s)	322
Eco57I	CTGAAG	4 cut(s)	741, 1158, 1329, 1506
EcoRII	CCWGG	1 cut(s)	695
EcoT14I	CCWWGG	1 cut(s)	990
ErhI	CCWWGG	1 cut(s)	990
FaeI	CATG	7 cut(s)	383, 415, 451, 985, 994, 1232, 1396
FaqI	GGGAC	2 cut(s)	109, 176
FatI	CATG	7 cut(s)	379, 411, 447, 981, 990, 1228, 1392
FauNDI	CATATG	1 cut(s)	150
FbaI	TGATCA	2 cut(s)	376, 730
FokI	GGATG	1 cut(s)	1007
FspBI	CTAG	5 cut(s)	596, 806, 929, 1164, 1401
HaeIII	GGCC	2 cut(s)	293, 986
Hin1II	CATG	7 cut(s)	383, 415, 451, 985, 994, 1232, 1396
HindIII	AAGCTT	2 cut(s)	894, 1122
HinfI	GANTC	7 cut(s)	113, 122, 200, 278, 887, 972, 1277
HphI	GGTGA	1 cut(s)	891
Hpy188III	TCNNGA	8 cut(s)	91, 132, 412, 454, 559, 1181, 1270, 1361
HpyAV	CCTTC	7 cut(s)	62, 138, 330, 556, 962, 1042, 1216
HpyCH4III	ACNGT	1 cut(s)	1075
HpyCH4IV	ACGT	1 cut(s)	1471
HpyF10VI	GCNNNNNNNGC	6 cut(s)	512, 1130, 1208, 1412, 1481, 1519
HpyF3I	CTNAG	9 cut(s)	265, 323, 443, 609, 648, 1100, 1296, 1416, 1517
HpySE526I	ACGT	1 cut(s)	1471
Hsp92II	CATG	7 cut(s)	383, 415, 451, 985, 994, 1232, 1396
Ksp22I	TGATCA	2 cut(s)	376, 730
Kzo9I	GATC	6 cut(s)	29, 256, 376, 456, 730, 1027
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	1 cut(s)	1225
Lsp1109I	GCAGC	7 cut(s)	436, 940, 1231, 1300, 1424, 1500, 1522
LweI	GCATC	5 cut(s)	226, 772, 1142, 1189, 1195
MaeI	CTAG	5 cut(s)	596, 806, 929, 1164, 1401
MaeII	ACGT	1 cut(s)	1471
MaeIII	GTNAC	3 cut(s)	763, 786, 906
MalI	GATC	6 cut(s)	31, 258, 378, 458, 732, 1029
MboI	GATC	6 cut(s)	29, 256, 376, 456, 730, 1027
MflI	RGATCY	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	293
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	3 cut(s)	131, 194, 881
MmeI	TCCRAC	2 cut(s)	1098, 1239
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	4 cut(s)	810, 1070, 1191, 1254
MslI	CAYNNNNRTG	1 cut(s)	1233
Msp20I	TGGCCA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	1513
MspCI	CTTAAG	1 cut(s)	1190
MspR9I	CCNGG	1 cut(s)	697
MvaI	CCWGG	1 cut(s)	697
MwoI	GCNNNNNNNGC	6 cut(s)	512, 1130, 1208, 1412, 1481, 1519
NcoI	CCATGG	1 cut(s)	990
NdeI	CATATG	1 cut(s)	150
NdeII	GATC	6 cut(s)	29, 256, 376, 456, 730, 1027
NlaIII	CATG	7 cut(s)	383, 415, 451, 985, 994, 1232, 1396
NmeAIII	GCCGAG	1 cut(s)	524
NmuCI	GTSAC	1 cut(s)	763
NspI	RCATGY	2 cut(s)	451, 1232
PaeI	GCATGC	2 cut(s)	451, 1232
PagI	TCATGA	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	579
PfeI	GAWTC	4 cut(s)	113, 278, 972, 1277
PflFI	GACNNNGTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	982
PleI	GAGTC	3 cut(s)	130, 194, 881
PpsI	GAGTC	3 cut(s)	130, 194, 881
PshAI	GACNNNNGTC	1 cut(s)	168
PsiI	TTATAA	1 cut(s)	1001
Psp6I	CCWGG	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	695
PstI	CTGCAG	3 cut(s)	685, 958, 1414
PstNI	CAGNNNCTG	3 cut(s)	442, 1202, 1352
PsuI	RGATCY	1 cut(s)	256
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	1513
RsaI	GTAC	2 cut(s)	980, 1460
RsaNI	GTAC	2 cut(s)	979, 1459
RseI	CAYNNNNRTG	1 cut(s)	1233
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	4 cut(s)	810, 1070, 1191, 1254
Sau3AI	GATC	6 cut(s)	29, 256, 376, 456, 730, 1027
ScaI	AGTACT	1 cut(s)	1460
SchI	GAGTC	3 cut(s)	131, 194, 881
ScrFI	CCNGG	1 cut(s)	697
SfaNI	GCATC	5 cut(s)	226, 772, 1142, 1189, 1195
SfcI	CTRYAG	4 cut(s)	681, 954, 1353, 1410
SmiMI	CAYNNNNRTG	1 cut(s)	1233
SmlI	CTYRAG	4 cut(s)	89, 452, 1190, 1268
SmoI	CTYRAG	4 cut(s)	89, 452, 1190, 1268
SphI	GCATGC	2 cut(s)	451, 1232
SsiI	CCGC	4 cut(s)	513, 548, 935, 1209
SspMI	CTAG	5 cut(s)	596, 806, 929, 1164, 1401
StyD4I	CCNGG	1 cut(s)	695
StyI	CCWWGG	1 cut(s)	990
TaaI	ACNGT	1 cut(s)	1075
TaiI	ACGT	1 cut(s)	1474
TaqI	TCGA	6 cut(s)	28, 172, 273, 352, 459, 780
TaqII	GACCGA	2 cut(s)	193, 346
TatI	WGTACW	2 cut(s)	978, 1458
TauI	GCSGC	3 cut(s)	515, 938, 1211
TfiI	GAWTC	4 cut(s)	113, 278, 972, 1277
Tru1I	TTAA	4 cut(s)	810, 1070, 1191, 1254
Tru9I	TTAA	4 cut(s)	810, 1070, 1191, 1254
TscAI	CASTG	2 cut(s)	690, 1240
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	7 cut(s)	424, 953, 1244, 1313, 1412, 1510, 1513
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	5 cut(s)	417, 534, 597, 810, 1028
TspGWI	ACGGA	2 cut(s)	172, 805
TspRI	CASTG	2 cut(s)	690, 1240
Tth111I	GACNNNGTC	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	982
Vha464I	CTTAAG	1 cut(s)	1190
XapI	RAATTY	2 cut(s)	629, 1304
XceI	RCATGY	2 cut(s)	451, 1232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1114
XspI	CTAG	5 cut(s)	596, 806, 929, 1164, 1401
ZrmI	AGTACT	1 cut(s)	1460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.