Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G66840 AT1G66840 AT5G38150 |
| fragaria_vesca | FvH4_1g25551 |
| malus_domestica | MD09G1256700.v1.1 MD17G1250200.v1.1 |
| prunus_persica | Prupe.3G148500_v2.0.a1 Prupe.3G148500_v2.0.a1 Prupe.3G148500_v2.0.a1 |
| pyrus_communis | pycom09g17230 pycom17g25360 pycom17g25390 pycom17g25400 |
| rosa_chinensis | RchiOBHm_Chr2g0123711 |
| rosa_laevigata | RLG00000018771 |
| rosa_multiflora | Rmu_sc0002870.1_g000003 Rmu_sc0021381.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00120400 |
| rosa_rugosa | Rorug02G0247500 |
| rosa_samantha | Rh2AG306500 Rh2BG314900 Rh2CG292900 Rh2DG330200 |
| rosa_wichuraiana | Rw2G024590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2735 |
| AatII | GACGTC | 1 cut(s) | 551 |
| Acc65I | GGTACC | 1 cut(s) | 1289 |
| AccB1I | GGYRCC | 1 cut(s) | 1289 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2716 |
| AccII | CGCG | 1 cut(s) | 936 |
| AclWI | GGATC | 3 cut(s) | 944, 1087, 1718 |
| AcoI | YGGCCR | 3 cut(s) | 166, 632, 2025 |
| AcsI | RAATTY | 7 cut(s) | 396, 837, 1089, 2363, 3038, 3420, 3478 |
| AcuI | CTGAAG | 5 cut(s) | 2475, 2892, 3051, 3063, 3240 |
| AcyI | GRCGYC | 1 cut(s) | 548 |
| AfaI | GTAC | 5 cut(s) | 777, 1291, 2714, 3194, 3351 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 246, 527, 940, 1128, 1286, 2716, 3584 |
| AflII | CTTAAG | 1 cut(s) | 2924 |
| AflIII | ACRYGT | 2 cut(s) | 684, 1113 |
| AjiI | CACGTC | 1 cut(s) | 3206 |
| AjnI | CCWGG | 4 cut(s) | 501, 1696, 2429, 3523 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 105, 137 |
| Alw21I | GWGCWC | 5 cut(s) | 133, 314, 1006, 1507, 3532 |
| Alw26I | GTCTC | 9 cut(s) | 164, 272, 1654, 1822, 2056, 2380, 2609, 2906, 3421 |
| AlwI | GGATC | 3 cut(s) | 944, 1087, 1718 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2176, 2936, 3086, 3455 |
| Ama87I | CYCGRG | 3 cut(s) | 720, 1428, 1454 |
| AoxI | GGCC | 8 cut(s) | 166, 451, 632, 1435, 2025, 2718, 3276, 3360 |
| ApoI | RAATTY | 7 cut(s) | 396, 837, 1089, 2363, 3038, 3420, 3478 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2481, 2513 |
| AseI | ATTAAT | 1 cut(s) | 1719 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3545 |
| Asp718I | GGTACC | 1 cut(s) | 1289 |
| AspLEI | GCGC | 1 cut(s) | 1954 |
| AsuC2I | CCSGG | 1 cut(s) | 1594 |
| AsuHPI | GGTGA | 5 cut(s) | 125, 325, 1377, 1655, 2625 |
| AsuII | TTCGAA | 1 cut(s) | 674 |
| AvaI | CYCGRG | 3 cut(s) | 720, 1428, 1454 |
| AxyI | CCTNAGG | 2 cut(s) | 1241, 1369 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 636, 669 |
| BalI | TGGCCA | 1 cut(s) | 2027 |
| BanI | GGYRCC | 1 cut(s) | 1289 |
| BanII | GRGCYC | 3 cut(s) | 314, 480, 3532 |
| BauI | CACGAG | 1 cut(s) | 2038 |
| BbsI | GAAGAC | 1 cut(s) | 244 |
| Bbv12I | GWGCWC | 5 cut(s) | 133, 314, 1006, 1507, 3532 |
| BbvCI | CCTCAGC | 1 cut(s) | 585 |
| BccI | CCATC | 9 cut(s) | 184, 248, 412, 607, 827, 1159, 1632, 2017, 3496 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 41, 75, 421, 455, 3556, 3590 |
| BciT130I | CCWGG | 4 cut(s) | 503, 1698, 2431, 3525 |
| BclI | TGATCA | 4 cut(s) | 1200, 1630, 2110, 2464 |
| BcnI | CCSGG | 1 cut(s) | 1594 |
| BcoDI | GTCTC | 9 cut(s) | 164, 272, 1654, 1822, 2056, 2380, 2609, 2906, 3421 |
| BfaI | CTAG | 9 cut(s) | 1094, 1439, 1533, 1778, 2330, 2540, 2663, 3135, 3366 |
| BfmI | CTRYAG | 6 cut(s) | 1702, 2415, 2534, 2688, 3087, 3144 |
| BfrI | CTTAAG | 1 cut(s) | 2924 |
| BglII | AGATCT | 1 cut(s) | 1990 |
| BmcAI | AGTACT | 1 cut(s) | 3194 |
| Bme1390I | CCNGG | 5 cut(s) | 503, 1594, 1698, 2431, 3525 |
| BmeT110I | CYCGRG | 3 cut(s) | 720, 1428, 1454 |
| BmgBI | CACGTC | 1 cut(s) | 3206 |
| BmiI | GGNNCC | 2 cut(s) | 757, 1291 |
| BmrFI | CCNGG | 5 cut(s) | 503, 1594, 1698, 2431, 3525 |
| BmrI | ACTGGG | 1 cut(s) | 1945 |
| BmsI | GCATC | 8 cut(s) | 1354, 1960, 2506, 2876, 2923, 2929, 3387, 3461 |
| BmuI | ACTGGG | 1 cut(s) | 1945 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1902 |
| BpiI | GAAGAC | 1 cut(s) | 244 |
| BpmI | CTGGAG | 3 cut(s) | 259, 3422, 3546 |
| Bpu10I | CCTNAGC | 3 cut(s) | 471, 585, 3252 |
| Bpu14I | TTCGAA | 1 cut(s) | 674 |
| BpuEI | CTTGAG | 7 cut(s) | 14, 335, 464, 990, 1808, 2171, 2987 |
| BpuMI | CCSGG | 1 cut(s) | 1594 |
| Bsa29I | ATCGAT | 2 cut(s) | 1636, 2193 |
| BsaHI | GRCGYC | 1 cut(s) | 548 |
| BsaI | GGTCTC | 2 cut(s) | 272, 2056 |
| BsaJI | CCNNGG | 4 cut(s) | 869, 1297, 1593, 2724 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2705, 2735 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 246, 527, 940, 1128, 1286, 2716, 3584 |
| Bse118I | RCCGGY | 1 cut(s) | 3462 |
| Bse21I | CCTNAGG | 2 cut(s) | 1241, 1369 |
| Bse3DI | GCAATG | 2 cut(s) | 183, 3057 |
| BseBI | CCWGG | 4 cut(s) | 503, 1698, 2431, 3525 |
| BseCI | ATCGAT | 2 cut(s) | 1636, 2193 |
| BseDI | CCNNGG | 4 cut(s) | 869, 1297, 1593, 2724 |
| BseGI | GGATG | 5 cut(s) | 423, 646, 1740, 2734, 3402 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 246, 527, 940, 1128, 1286, 2716, 3584 |
| BseMI | GCAATG | 2 cut(s) | 183, 3057 |
| BseRI | GAGGAG | 3 cut(s) | 338, 1987, 3359 |
| BseX3I | CGGCCG | 1 cut(s) | 632 |
| BsgI | GTGCAG | 3 cut(s) | 480, 2177, 3228 |
| Bsh1236I | CGCG | 1 cut(s) | 936 |
| Bsh1285I | CGRYCG | 1 cut(s) | 635 |
| BshFI | GGCC | 8 cut(s) | 168, 453, 634, 1437, 2027, 2720, 3278, 3362 |
| BshNI | GGYRCC | 1 cut(s) | 1289 |
| BshVI | ATCGAT | 2 cut(s) | 1636, 2193 |
| BsiEI | CGRYCG | 1 cut(s) | 635 |
| BsiHKAI | GWGCWC | 5 cut(s) | 133, 314, 1006, 1507, 3532 |
| BsiHKCI | CYCGRG | 3 cut(s) | 720, 1428, 1454 |
| BsiSI | CCGG | 3 cut(s) | 635, 1593, 3463 |
| BslFI | GGGAC | 5 cut(s) | 703, 1843, 1910, 3420, 3452 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 246, 527, 940, 1128, 1286, 2716, 3584 |
| BsmAI | GTCTC | 9 cut(s) | 164, 272, 1654, 1822, 2056, 2380, 2609, 2906, 3421 |
| BsmBI | CGTCTC | 1 cut(s) | 164 |
| BsmFI | GGGAC | 5 cut(s) | 703, 1843, 1910, 3420, 3452 |
| BsmI | GAATGC | 2 cut(s) | 880, 2968 |
| BsnI | GGCC | 8 cut(s) | 168, 453, 634, 1437, 2027, 2720, 3278, 3362 |
| Bso31I | GGTCTC | 2 cut(s) | 272, 2056 |
| BsoBI | CYCGRG | 3 cut(s) | 720, 1428, 1454 |
| Bsp119I | TTCGAA | 1 cut(s) | 674 |
| Bsp1286I | GDGCHC | 6 cut(s) | 133, 314, 480, 1006, 1507, 3532 |
| Bsp19I | CCATGG | 1 cut(s) | 2724 |
| BspANI | GGCC | 8 cut(s) | 168, 453, 634, 1437, 2027, 2720, 3278, 3362 |
| BspDI | ATCGAT | 2 cut(s) | 1636, 2193 |
| BspFNI | CGCG | 1 cut(s) | 936 |
| BspHI | TCATGA | 2 cut(s) | 1039, 2145 |
| BspLI | GGNNCC | 2 cut(s) | 757, 1291 |
| BspMAI | CTGCAG | 3 cut(s) | 2419, 2692, 3148 |
| BspPI | GGATC | 3 cut(s) | 944, 1087, 1718 |
| BspQI | GCTCTTC | 2 cut(s) | 809, 2313 |
| BspT104I | TTCGAA | 1 cut(s) | 674 |
| BspT107I | GGYRCC | 1 cut(s) | 1289 |
| BspTI | CTTAAG | 1 cut(s) | 2924 |
| BspTNI | GGTCTC | 2 cut(s) | 272, 2056 |
| BsrDI | GCAATG | 2 cut(s) | 183, 3057 |
| BsrFI | RCCGGY | 1 cut(s) | 3462 |
| BssAI | RCCGGY | 1 cut(s) | 3462 |
| BssECI | CCNNGG | 4 cut(s) | 869, 1297, 1593, 2724 |
| BssNI | GRCGYC | 1 cut(s) | 548 |
| BssSI | CACGAG | 1 cut(s) | 2038 |
| BssT1I | CCWWGG | 3 cut(s) | 869, 1297, 2724 |
| Bst2BI | CACGAG | 1 cut(s) | 2038 |
| Bst2UI | CCWGG | 4 cut(s) | 503, 1698, 2431, 3525 |
| Bst4CI | ACNGT | 5 cut(s) | 775, 848, 1223, 1490, 2809 |
| Bst6I | CTCTTC | 7 cut(s) | 275, 296, 809, 1657, 2208, 2313, 2451 |
| BstACI | GRCGYC | 1 cut(s) | 548 |
| BstAFI | CTTAAG | 1 cut(s) | 2924 |
| BstBI | TTCGAA | 1 cut(s) | 674 |
| BstDSI | CCRYGG | 1 cut(s) | 2724 |
| BstF5I | GGATG | 5 cut(s) | 423, 646, 1740, 2734, 3402 |
| BstFNI | CGCG | 1 cut(s) | 936 |
| BstHHI | GCGC | 1 cut(s) | 1954 |
| BstMAI | GTCTC | 9 cut(s) | 164, 272, 1654, 1822, 2056, 2380, 2609, 2906, 3421 |
| BstMCI | CGRYCG | 1 cut(s) | 635 |
| BstNI | CCWGG | 4 cut(s) | 503, 1698, 2431, 3525 |
| BstNSI | RCATGY | 4 cut(s) | 688, 1117, 1317, 2185 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1902 |
| BstSCI | CCNGG | 5 cut(s) | 501, 1592, 1696, 2429, 3523 |
| BstSFI | CTRYAG | 6 cut(s) | 1702, 2415, 2534, 2688, 3087, 3144 |
| BstUI | CGCG | 1 cut(s) | 936 |
| BstV2I | GAAGAC | 1 cut(s) | 244 |
| BstX2I | RGATCY | 2 cut(s) | 949, 1990 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1268 |
| BstYI | RGATCY | 2 cut(s) | 949, 1990 |
| BstZI | CGGCCG | 1 cut(s) | 632 |
| Bsu15I | ATCGAT | 2 cut(s) | 1636, 2193 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1241, 1369 |
| BsuRI | GGCC | 8 cut(s) | 168, 453, 634, 1437, 2027, 2720, 3278, 3362 |
| BsuTUI | ATCGAT | 2 cut(s) | 1636, 2193 |
| BtgI | CCRYGG | 1 cut(s) | 2724 |
| BtrI | CACGTC | 1 cut(s) | 3206 |
| BtsCI | GGATG | 5 cut(s) | 423, 646, 1740, 2734, 3402 |
| BtsI | GCAGTG | 2 cut(s) | 1098, 2424 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2176, 2936, 3086, 3455 |
| CciI | TCATGA | 2 cut(s) | 1039, 2145 |
| CfoI | GCGC | 1 cut(s) | 1954 |
| Cfr10I | RCCGGY | 1 cut(s) | 3462 |
| ClaI | ATCGAT | 2 cut(s) | 1636, 2193 |
| CseI | GACGC | 1 cut(s) | 1614 |
| Csp6I | GTAC | 5 cut(s) | 776, 1290, 2713, 3193, 3350 |
| CviQI | GTAC | 5 cut(s) | 776, 1290, 2713, 3193, 3350 |
| EaeI | YGGCCR | 3 cut(s) | 166, 632, 2025 |
| EagI | CGGCCG | 1 cut(s) | 632 |
| Eam1104I | CTCTTC | 7 cut(s) | 275, 296, 809, 1657, 2208, 2313, 2451 |
| EarI | CTCTTC | 7 cut(s) | 275, 296, 809, 1657, 2208, 2313, 2451 |
| EciI | GGCGGA | 1 cut(s) | 2297 |
| Ecl136II | GAGCTC | 2 cut(s) | 312, 3530 |
| EclXI | CGGCCG | 1 cut(s) | 632 |
| Eco130I | CCWWGG | 3 cut(s) | 869, 1297, 2724 |
| Eco147I | AGGCCT | 2 cut(s) | 1437, 3362 |
| Eco24I | GRGCYC | 3 cut(s) | 314, 480, 3532 |
| Eco31I | GGTCTC | 2 cut(s) | 272, 2056 |
| Eco52I | CGGCCG | 1 cut(s) | 632 |
| Eco53kI | GAGCTC | 2 cut(s) | 312, 3530 |
| Eco57I | CTGAAG | 5 cut(s) | 2475, 2892, 3051, 3063, 3240 |
| Eco81I | CCTNAGG | 2 cut(s) | 1241, 1369 |
| Eco88I | CYCGRG | 3 cut(s) | 720, 1428, 1454 |
| EcoICRI | GAGCTC | 2 cut(s) | 312, 3530 |
| EcoRI | GAATTC | 1 cut(s) | 1089 |
| EcoRII | CCWGG | 4 cut(s) | 501, 1696, 2429, 3523 |
| EcoT14I | CCWWGG | 3 cut(s) | 869, 1297, 2724 |
| EcoT22I | ATGCAT | 1 cut(s) | 1621 |
| EcoT38I | GRGCYC | 3 cut(s) | 314, 480, 3532 |
| ErhI | CCWWGG | 3 cut(s) | 869, 1297, 2724 |
| Esp3I | CGTCTC | 1 cut(s) | 164 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2145, 2177, 3293, 3325, 3367, 3399 |
| FaqI | GGGAC | 5 cut(s) | 703, 1843, 1910, 3420, 3452 |
| FauI | CCCGC | 2 cut(s) | 365, 553 |
| FauNDI | CATATG | 2 cut(s) | 1884, 3537 |
| FbaI | TGATCA | 4 cut(s) | 1200, 1630, 2110, 2464 |
| FokI | GGATG | 5 cut(s) | 430, 653, 1747, 2741, 3409 |
| FriOI | GRGCYC | 3 cut(s) | 314, 480, 3532 |
| FspBI | CTAG | 9 cut(s) | 1094, 1439, 1533, 1778, 2330, 2540, 2663, 3135, 3366 |
| GlaI | GCGC | 1 cut(s) | 1953 |
| GsuI | CTGGAG | 3 cut(s) | 259, 3422, 3546 |
| HaeIII | GGCC | 8 cut(s) | 168, 453, 634, 1437, 2027, 2720, 3278, 3362 |
| HapII | CCGG | 3 cut(s) | 635, 1593, 3463 |
| HgaI | GACGC | 1 cut(s) | 1614 |
| HhaI | GCGC | 1 cut(s) | 1954 |
| Hin1I | GRCGYC | 1 cut(s) | 548 |
| Hin6I | GCGC | 1 cut(s) | 1952 |
| HinP1I | GCGC | 1 cut(s) | 1952 |
| HincII | GTYRAC | 2 cut(s) | 769, 1219 |
| HindII | GTYRAC | 2 cut(s) | 769, 1219 |
| HindIII | AAGCTT | 2 cut(s) | 2628, 2856 |
| HpaI | GTTAAC | 2 cut(s) | 769, 1219 |
| HpaII | CCGG | 3 cut(s) | 635, 1593, 3463 |
| HphI | GGTGA | 5 cut(s) | 125, 325, 1377, 1655, 2625 |
| Hpy166II | GTNNAC | 5 cut(s) | 769, 962, 1219, 1274, 1565 |
| Hpy8I | GTNNAC | 5 cut(s) | 769, 962, 1219, 1274, 1565 |
| Hpy99I | CGWCG | 2 cut(s) | 143, 611 |
| HpyCH4III | ACNGT | 5 cut(s) | 775, 848, 1223, 1490, 2809 |
| HpyCH4IV | ACGT | 3 cut(s) | 548, 894, 3205 |
| HpySE526I | ACGT | 3 cut(s) | 548, 894, 3205 |
| Hsp92I | GRCGYC | 1 cut(s) | 548 |
| HspAI | GCGC | 1 cut(s) | 1952 |
| KpnI | GGTACC | 1 cut(s) | 1293 |
| Ksp22I | TGATCA | 4 cut(s) | 1200, 1630, 2110, 2464 |
| KspAI | GTTAAC | 2 cut(s) | 769, 1219 |
| LguI | GCTCTTC | 2 cut(s) | 809, 2313 |
| LmnI | GCTCC | 3 cut(s) | 317, 1530, 3527 |
| LweI | GCATC | 8 cut(s) | 1354, 1960, 2506, 2876, 2923, 2929, 3387, 3461 |
| MaeI | CTAG | 9 cut(s) | 1094, 1439, 1533, 1778, 2330, 2540, 2663, 3135, 3366 |
| MaeII | ACGT | 3 cut(s) | 548, 894, 3205 |
| MaeIII | GTNAC | 6 cut(s) | 973, 1462, 1684, 2497, 2520, 2640 |
| MflI | RGATCY | 2 cut(s) | 949, 1990 |
| MhlI | GDGCHC | 6 cut(s) | 133, 314, 480, 1006, 1507, 3532 |
| MlsI | TGGCCA | 1 cut(s) | 2027 |
| MluNI | TGGCCA | 1 cut(s) | 2027 |
| MlyI | GAGTC | 4 cut(s) | 755, 926, 1865, 2615 |
| MmeI | TCCRAC | 5 cut(s) | 524, 783, 1688, 2832, 2973 |
| Mox20I | TGGCCA | 1 cut(s) | 2027 |
| Mph1103I | ATGCAT | 1 cut(s) | 1621 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3545 |
| MscI | TGGCCA | 1 cut(s) | 2027 |
| MslI | CAYNNNNRTG | 1 cut(s) | 405 |
| Msp20I | TGGCCA | 1 cut(s) | 2027 |
| MspA1I | CMGCKG | 1 cut(s) | 3248 |
| MspCI | CTTAAG | 1 cut(s) | 2924 |
| MspI | CCGG | 3 cut(s) | 635, 1593, 3463 |
| MspR9I | CCNGG | 5 cut(s) | 503, 1594, 1698, 2431, 3525 |
| Mva1269I | GAATGC | 2 cut(s) | 880, 2968 |
| MvaI | CCWGG | 4 cut(s) | 503, 1698, 2431, 3525 |
| MvnI | CGCG | 1 cut(s) | 936 |
| NciI | CCSGG | 1 cut(s) | 1594 |
| NcoI | CCATGG | 1 cut(s) | 2724 |
| NdeI | CATATG | 2 cut(s) | 1884, 3537 |
| NlaIV | GGNNCC | 2 cut(s) | 757, 1291 |
| NmeAIII | GCCGAG | 2 cut(s) | 2258, 3511 |
| NmuCI | GTSAC | 2 cut(s) | 1684, 2497 |
| NsiI | ATGCAT | 1 cut(s) | 1621 |
| NspI | RCATGY | 4 cut(s) | 688, 1117, 1317, 2185 |
| NspV | TTCGAA | 1 cut(s) | 674 |
| PaeI | GCATGC | 2 cut(s) | 1317, 2185 |
| PaeR7I | CTCGAG | 1 cut(s) | 1454 |
| PagI | TCATGA | 2 cut(s) | 1039, 2145 |
| PceI | AGGCCT | 2 cut(s) | 1437, 3362 |
| PciI | ACATGT | 2 cut(s) | 684, 1113 |
| PciSI | GCTCTTC | 2 cut(s) | 809, 2313 |
| PctI | GAATGC | 2 cut(s) | 880, 2968 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3545 |
| PfeI | GAWTC | 8 cut(s) | 377, 676, 712, 740, 1847, 2012, 2706, 3011 |
| PflFI | GACNNNGTC | 1 cut(s) | 1937 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2716 |
| PfoI | TCCNGGA | 1 cut(s) | 3523 |
| PleI | GAGTC | 4 cut(s) | 755, 925, 1864, 2615 |
| PpsI | GAGTC | 4 cut(s) | 755, 925, 1864, 2615 |
| PscI | ACATGT | 2 cut(s) | 684, 1113 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1902 |
| PshBI | ATTAAT | 1 cut(s) | 1719 |
| PsiI | TTATAA | 1 cut(s) | 2735 |
| Psp124BI | GAGCTC | 2 cut(s) | 314, 3532 |
| Psp6I | CCWGG | 4 cut(s) | 501, 1696, 2429, 3523 |
| PspGI | CCWGG | 4 cut(s) | 501, 1696, 2429, 3523 |
| PspN4I | GGNNCC | 2 cut(s) | 757, 1291 |
| PstI | CTGCAG | 3 cut(s) | 2419, 2692, 3148 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2176, 2936, 3086, 3455 |
| PsuI | RGATCY | 2 cut(s) | 949, 1990 |
| PsyI | GACNNNGTC | 1 cut(s) | 1937 |
| PvuII | CAGCTG | 1 cut(s) | 3248 |
| RsaI | GTAC | 5 cut(s) | 777, 1291, 2714, 3194, 3351 |
| RsaNI | GTAC | 5 cut(s) | 776, 1290, 2713, 3193, 3350 |
| RseI | CAYNNNNRTG | 1 cut(s) | 405 |
| SacI | GAGCTC | 2 cut(s) | 314, 3532 |
| SapI | GCTCTTC | 2 cut(s) | 809, 2313 |
| ScaI | AGTACT | 1 cut(s) | 3194 |
| SchI | GAGTC | 4 cut(s) | 755, 926, 1865, 2615 |
| ScrFI | CCNGG | 5 cut(s) | 503, 1594, 1698, 2431, 3525 |
| SduI | GDGCHC | 6 cut(s) | 133, 314, 480, 1006, 1507, 3532 |
| SfaNI | GCATC | 8 cut(s) | 1354, 1960, 2506, 2876, 2923, 2929, 3387, 3461 |
| SfcI | CTRYAG | 6 cut(s) | 1702, 2415, 2534, 2688, 3087, 3144 |
| Sfr274I | CTCGAG | 1 cut(s) | 1454 |
| SfuI | TTCGAA | 1 cut(s) | 674 |
| SlaI | CTCGAG | 1 cut(s) | 1454 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 405 |
| SmlI | CTYRAG | 9 cut(s) | 29, 350, 479, 1005, 1454, 1823, 2186, 2924, 3002 |
| SmoI | CTYRAG | 9 cut(s) | 29, 350, 479, 1005, 1454, 1823, 2186, 2924, 3002 |
| SphI | GCATGC | 2 cut(s) | 1317, 2185 |
| SseBI | AGGCCT | 2 cut(s) | 1437, 3362 |
| SspI | AATATT | 2 cut(s) | 1353, 3294 |
| SspMI | CTAG | 9 cut(s) | 1094, 1439, 1533, 1778, 2330, 2540, 2663, 3135, 3366 |
| SstI | GAGCTC | 2 cut(s) | 314, 3532 |
| StuI | AGGCCT | 2 cut(s) | 1437, 3362 |
| StyD4I | CCNGG | 5 cut(s) | 501, 1592, 1696, 2429, 3523 |
| StyI | CCWWGG | 3 cut(s) | 869, 1297, 2724 |
| TaaI | ACNGT | 5 cut(s) | 775, 848, 1223, 1490, 2809 |
| TaiI | ACGT | 3 cut(s) | 551, 897, 3208 |
| TaqII | GACCGA | 1 cut(s) | 2080 |
| TatI | WGTACW | 3 cut(s) | 775, 2712, 3192 |
| TauI | GCSGC | 4 cut(s) | 634, 2249, 2672, 2945 |
| TfiI | GAWTC | 8 cut(s) | 377, 676, 712, 740, 1847, 2012, 2706, 3011 |
| TseFI | GTSAC | 2 cut(s) | 1684, 2497 |
| Tsp45I | GTSAC | 2 cut(s) | 1684, 2497 |
| TspGWI | ACGGA | 4 cut(s) | 182, 754, 1906, 2539 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1937 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2716 |
| Vha464I | CTTAAG | 1 cut(s) | 2924 |
| VspI | ATTAAT | 1 cut(s) | 1719 |
| XapI | RAATTY | 7 cut(s) | 396, 837, 1089, 2363, 3038, 3420, 3478 |
| XbaI | TCTAGA | 2 cut(s) | 1532, 3365 |
| XceI | RCATGY | 4 cut(s) | 688, 1117, 1317, 2185 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2848 |
| XhoI | CTCGAG | 1 cut(s) | 1454 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3545 |
| XspI | CTAG | 9 cut(s) | 1094, 1439, 1533, 1778, 2330, 2540, 2663, 3135, 3366 |
| ZraI | GACGTC | 1 cut(s) | 549 |
| ZrmI | AGTACT | 1 cut(s) | 3194 |
| Zsp2I | ATGCAT | 1 cut(s) | 1621 |