Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010203

Physical Location & Seq

Genomic Coordinates Forward (+)

15510842 .. 15512934

Gene Structure 2093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

ATGGTGAATTTGTTGTCAGCAAATCGAGAAGCTTTGATTGCACAAAGCATCTGTGCAACAGTATTGAAAGGAAACTGGAAAAATATTCTGAAACACAAAGTTGATTCTGGGTTATTGAAATCAGCGATAACCACTCAGGTAATCTCTGAGCTTTCTCTGTTTTCTGGTTATGGTGGACCTTCTCTTTCATGGAGTTTCTTTATCTGGACCGATTCTTTACCAAGTAGCAAACATAGTTTACAATCATCATGGAAAATGATTTTGATTCTCACAAAACACAAGCATTTCAAAACTGCACACCAACTGCTCGATAAATTGGCTCAGAGAGAGCTTTTGTCATCTCCTCTGGTTTTGAGATCTTTAGTTGGTGGTGTTTCTGAAGACCCAGAAGATGTATCTCACGTCTTTAGCTGGTTGATGATATATTACGCTAAAGCCGGGATGATCAACGATTCGATTGTGGTGTTTGAGCAGATTAGGAGTTGTGGATTGAAGCCTCATTTGCAAGCTTGTACTGTGTTACTAAATAGTCTGGTGAAGCAGAGATTGACTGATACTGTTTGGAAGATATTCAAGAAGATGGTTAAGTTAGGTGTTGTTGCTAACATTCATGTGTATAATGTATTGGTTCATGCTTGTTCTAAGTCTGGTGATCCCGAGAAAGCTGAGAAATTGTTGAGTGAGATGGAAGAAAAAGGTGTGTTTCCTGATATCTTTACCTATAACACGTTGATCTCTGTGTACTGCAAAAAGAGTATGCATTTCGAGGCTTTATCTGTGCAAGATAGGATGGAGAGAAGTGGTGTTGCTCCTAATATTGTCACTTATAATTCATTCATACATGGGTTTAGTAGAGAAGGTAGAATGAGAGAGGCCACAAGACTGTTTCGGGAGATTAAAGACGATGTTACAGCGAATCATGTTACTTATACTACTTTGATTGATGGATATTGTAGAATGAATGATATTGATGAAGCTTTGAGGTTACGTGAGGTAATGGAGTCAAGAGGGTTTTCTCCTGGAGTTGTGACATATAATTCGATTTTGCGTAAGTTATGTGAAGATGGAAGAATAAGAGAAGCTAACCGGCTTTTGACTGAGATGAGTGGAAAAAAGATTGAACCTGATAATATCACCTGCAATACTTTGATCAACGCATATTGCAAAATCGAAGACATGGTATCTGCAGTGAAGGTCAAGAAGAAGATGATTGAATCAGGGCTAAAACTGGATATGTATTCATACAAAGCATTGATTCATGGGTTTTGTAAAGTGTTGGAACTGGAAAATGCAAAGGAGGAACTGTTCTCTATGATAGAGAAAGGCTTCTCTCCTGGATATGCGACCTATTCTTGGCTCGTGGATGGATTCTATAACCAGAACAAGCAAGACGAAATCACAAAACTCCTAGAGGAGTTTGAAAAAAGAGGTCTTTGTGCTGATGTTGCTCTATACAGAGGATTAATAAGAAGGATTTGTAAGTTAGAACAGGTGGATTACGCCAAAGTGTTATTTGAATCAATGGAAAAGAAGGGTTTAGTGGGAGATAGTGTTATATTCACGACCATGGCGTATGCATATTGGCGAACAGGGAAGGTCACTGAAGCTTCTGCTTTGTTCGATGTAATGTATAATCGACGGTTAATGGTAAACTTGAAACTTTATAAATCTATCAGTGCCTCTTACGCTGGTGATAACGATGTTTTGAGATTCTTTTGGAGTCATGTAGGTGATAGATGTCTTATATCGAAGAGTATTTTACGGGAAATGAACAGAAGCGAGGTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

596

Amino Acids

67.89

Weight (kDa)

8.9

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	170 - 215	1.7e-07	PPR repeat family
PPR_long	PF17177	181 - 304	1.5e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	189 - 250	2.3e-13	Pentatricopeptide repeat domain
PPR_2	PF13041	202 - 250	4e-16	PPR repeat family
PPR	PF01535	205 - 234	1.5e-08	PPR repeat
PPR_3	PF13812	224 - 281	2.5e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	232 - 265	3.2e-08	PPR repeat
PPR_2	PF13041	236 - 283	2e-14	PPR repeat family
PPR	PF01535	239 - 269	1.6e-07	PPR repeat
PPR_1	PF12854	268 - 299	2e-10	PPR repeat
PPR_2	PF13041	271 - 301	1.6e-07	PPR repeat family
PPR	PF01535	274 - 301	9.9e-07	PPR repeat
TPR_24	PF23276	284 - 400	1.7e-12	Fungal tetratrico peptide repeats
PPR_3	PF13812	295 - 350	6.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	303 - 334	1.6e-11	PPR repeat
PPR_2	PF13041	306 - 353	1.2e-15	PPR repeat family
PPR	PF01535	308 - 338	1.9e-08	PPR repeat
PPR_long	PF17177	320 - 420	2.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	336 - 369	1.4e-08	PPR repeat
PPR_2	PF13041	340 - 389	1.2e-15	PPR repeat family
PPR_1	PF12854	372 - 403	7.7e-06	PPR repeat
PPR_2	PF13041	375 - 424	1.4e-13	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38730
fragaria_vesca	FvH4_1g20970
malus_domestica	MD01G1028900.v1.1 MD15G1324700.v1.1
prunus_persica	Prupe.6G186200_v2.0.a1 Prupe.6G186200_v2.0.a1
pyrus_communis	pycom01g05700 pycom15g28650
rosa_chinensis	RchiOBHm_Chr2g0114451 RchiOBHm_Chr6g0269561
rosa_laevigata	RLG00000018102
rosa_multiflora	Rmu_sc0000431.1_g000034 Rmu_sc0003151.1_g000025
rosa_roxburghii	Rroxscaffold_2G00130160
rosa_rugosa	Rorug02G0190400 Rorug02G0190500
rosa_samantha	Rh2AG247700 Rh2BG257500 Rh2CG251200 Rh2DG255600
rosa_wichuraiana	Rw2G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	828, 1665
AarI	CACCTGC	1 cut(s)	1145
Acc36I	ACCTGC	1 cut(s)	1145
AclWI	GGATC	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	2 cut(s)	399, 1623
AfaI	GTAC	2 cut(s)	514, 743
AfiI	CCNNNNNNNGG	1 cut(s)	1353
AflIII	ACRYGT	1 cut(s)	726
AjiI	CACGTC	1 cut(s)	403
AjnI	CCWGG	2 cut(s)	1018, 1333
AloI	GAACNNNNNNTCC	2 cut(s)	1289, 1321
AluBI	AGCT	9 cut(s)	32, 151, 331, 411, 509, 665, 977, 1082, 1607
AluI	AGCT	9 cut(s)	32, 151, 331, 411, 509, 665, 977, 1082, 1607
AlwI	GGATC	1 cut(s)	647
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	1 cut(s)	873
ApoI	RAATTY	1 cut(s)	7
ArsI	GACNNNNNNTTYG	2 cut(s)	1021, 1053
AseI	ATTAAT	1 cut(s)	1463
Asp700I	GAANNNNTTC	2 cut(s)	569, 1325
AspS9I	GGNCC	2 cut(s)	176, 207
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	6 cut(s)	16, 547, 662, 1126, 1703, 1742
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	2 cut(s)	176, 207
BauI	CACGAG	1 cut(s)	1358
BbsI	GAAGAC	2 cut(s)	387, 1179
BccI	CCATC	6 cut(s)	574, 679, 784, 938, 1058, 1358
BciT130I	CCWGG	2 cut(s)	1020, 1335
BclI	TGATCA	2 cut(s)	444, 1149
BcnI	CCSGG	1 cut(s)	439
BfaI	CTAG	1 cut(s)	1409
BfmI	CTRYAG	1 cut(s)	1185
BfuAI	ACCTGC	1 cut(s)	1145
BglII	AGATCT	1 cut(s)	356
Bme1390I	CCNGG	3 cut(s)	439, 1020, 1335
Bme18I	GGWCC	2 cut(s)	176, 207
BmeT110I	CYCGRG	1 cut(s)	656
BmgBI	CACGTC	1 cut(s)	403
BmgT120I	GGNCC	2 cut(s)	176, 207
BmrFI	CCNGG	3 cut(s)	439, 1020, 1335
BmsI	GCATC	1 cut(s)	57
BpiI	GAAGAC	2 cut(s)	387, 1179
BpmI	CTGGAG	1 cut(s)	1041
BpuMI	CCSGG	1 cut(s)	439
BsaAI	YACGTR	1 cut(s)	989
BsaJI	CCNNGG	1 cut(s)	1566
BsaXI	ACNNNNNCTCC	4 cut(s)	1289, 1319, 1536, 1566
Bsc4I	CCNNNNNNNGG	1 cut(s)	1353
Bse118I	RCCGGY	1 cut(s)	1086
Bse1I	ACTGG	3 cut(s)	80, 1233, 1287
BseBI	CCWGG	2 cut(s)	1020, 1335
BseDI	CCNNGG	1 cut(s)	1566
BseGI	GGATG	3 cut(s)	447, 795, 1369
BseLI	CCNNNNNNNGG	1 cut(s)	1353
BseMII	CTCAG	5 cut(s)	138, 149, 335, 657, 1089
BseNI	ACTGG	3 cut(s)	80, 1233, 1287
BseRI	GAGGAG	2 cut(s)	333, 1427
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	875
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	2 cut(s)	438, 1087
BslI	CCNNNNNNNGG	1 cut(s)	1353
BsnI	GGCC	1 cut(s)	875
BsoBI	CYCGRG	1 cut(s)	656
Bsp143I	GATC	5 cut(s)	356, 444, 652, 732, 1149
Bsp19I	CCATGG	1 cut(s)	1566
BspANI	GGCC	1 cut(s)	875
BspCNI	CTCAG	5 cut(s)	139, 148, 334, 658, 1090
BspMAI	CTGCAG	1 cut(s)	1189
BspMI	ACCTGC	1 cut(s)	1145
BspPI	GGATC	1 cut(s)	647
BsrFI	RCCGGY	1 cut(s)	1086
BsrI	ACTGG	3 cut(s)	80, 1233, 1287
BssAI	RCCGGY	1 cut(s)	1086
BssECI	CCNNGG	1 cut(s)	1566
BssMI	GATC	5 cut(s)	356, 444, 652, 732, 1149
BssSI	CACGAG	1 cut(s)	1358
BssT1I	CCWWGG	1 cut(s)	1566
Bst2BI	CACGAG	1 cut(s)	1358
Bst2UI	CCWGG	2 cut(s)	1020, 1335
Bst4CI	ACNGT	6 cut(s)	61, 517, 559, 885, 1305, 1641
Bst6I	CTCTTC	1 cut(s)	1745
BstBAI	YACGTR	1 cut(s)	989
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	6 cut(s)	135, 147, 321, 642, 666, 1098
BstDSI	CCRYGG	1 cut(s)	1566
BstF5I	GGATG	3 cut(s)	447, 795, 1369
BstKTI	GATC	5 cut(s)	359, 447, 655, 735, 1152
BstMBI	GATC	5 cut(s)	356, 444, 652, 732, 1149
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 502, 1445, 1685
BstNI	CCWGG	2 cut(s)	1020, 1335
BstSCI	CCNGG	3 cut(s)	437, 1018, 1333
BstSFI	CTRYAG	1 cut(s)	1185
BstV2I	GAAGAC	2 cut(s)	387, 1179
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	875
BtgI	CCRYGG	1 cut(s)	1566
BtrI	CACGTC	1 cut(s)	403
BtsCI	GGATG	3 cut(s)	447, 795, 1369
BtsI	GCAGTG	1 cut(s)	1194
BtsIMutI	CAGTG	3 cut(s)	1194, 1599, 1681
BveI	ACCTGC	1 cut(s)	1145
Cac8I	GCNNGC	1 cut(s)	507
Cfr10I	RCCGGY	1 cut(s)	1086
Cfr13I	GGNCC	2 cut(s)	176, 207
Csp6I	GTAC	2 cut(s)	513, 742
CviQI	GTAC	2 cut(s)	513, 742
DdeI	CTNAG	6 cut(s)	135, 147, 321, 642, 666, 1098
DpnI	GATC	5 cut(s)	358, 446, 654, 734, 1151
DpnII	GATC	5 cut(s)	356, 444, 652, 732, 1149
Eam1104I	CTCTTC	1 cut(s)	1745
EarI	CTCTTC	1 cut(s)	1745
Eco130I	CCWWGG	1 cut(s)	1566
Eco32I	GATATC	1 cut(s)	712
Eco47I	GGWCC	2 cut(s)	176, 207
Eco57I	CTGAAG	2 cut(s)	399, 1623
Eco88I	CYCGRG	1 cut(s)	656
EcoRII	CCWGG	2 cut(s)	1018, 1333
EcoRV	GATATC	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	1566
EcoT22I	ATGCAT	2 cut(s)	762, 1579
ErhI	CCWWGG	1 cut(s)	1566
FbaI	TGATCA	2 cut(s)	444, 1149
FokI	GGATG	3 cut(s)	454, 802, 1376
FspBI	CTAG	1 cut(s)	1409
GsuI	CTGGAG	1 cut(s)	1041
HaeIII	GGCC	1 cut(s)	875
HapII	CCGG	2 cut(s)	438, 1087
HindIII	AAGCTT	4 cut(s)	30, 507, 975, 1605
HpaII	CCGG	2 cut(s)	438, 1087
HphI	GGTGA	6 cut(s)	16, 547, 662, 1126, 1703, 1742
Hpy166II	GTNNAC	4 cut(s)	176, 239, 742, 1651
Hpy188I	TCNGA	4 cut(s)	90, 148, 324, 379
Hpy188III	TCNNGA	9 cut(s)	26, 205, 574, 656, 707, 890, 1005, 1198, 1561
Hpy8I	GTNNAC	4 cut(s)	176, 239, 742, 1651
Hpy99I	CGWCG	1 cut(s)	1641
HpyAV	CCTTC	6 cut(s)	189, 851, 1186, 1464, 1525, 1588
HpyCH4III	ACNGT	6 cut(s)	61, 517, 559, 885, 1305, 1641
HpyCH4IV	ACGT	3 cut(s)	402, 728, 988
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 502, 1445, 1685
HpyF3I	CTNAG	6 cut(s)	135, 147, 321, 642, 666, 1098
HpySE526I	ACGT	3 cut(s)	402, 728, 988
Ksp22I	TGATCA	2 cut(s)	444, 1149
Kzo9I	GATC	5 cut(s)	356, 444, 652, 732, 1149
LmnI	GCTCC	1 cut(s)	814
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	1409
MaeII	ACGT	3 cut(s)	402, 728, 988
MaeIII	GTNAC	7 cut(s)	519, 820, 907, 922, 984, 1027, 1597
MalI	GATC	5 cut(s)	358, 446, 654, 734, 1151
MboI	GATC	5 cut(s)	356, 444, 652, 732, 1149
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	5 cut(s)	7, 314, 671, 829, 1036
MlyI	GAGTC	2 cut(s)	1010, 1729
MmeI	TCCRAC	1 cut(s)	1257
Mph1103I	ATGCAT	2 cut(s)	762, 1579
MroXI	GAANNNNTTC	2 cut(s)	569, 1325
MseI	TTAA	4 cut(s)	585, 897, 1463, 1643
MslI	CAYNNNNRTG	3 cut(s)	611, 1565, 1728
MspI	CCGG	2 cut(s)	438, 1087
MspR9I	CCNGG	3 cut(s)	439, 1020, 1335
MvaI	CCWGG	2 cut(s)	1020, 1335
MwoI	GCNNNNNNNGC	4 cut(s)	38, 502, 1445, 1685
NciI	CCSGG	1 cut(s)	439
NcoI	CCATGG	1 cut(s)	1566
NdeII	GATC	5 cut(s)	356, 444, 652, 732, 1149
NmuCI	GTSAC	3 cut(s)	820, 1027, 1597
NsiI	ATGCAT	2 cut(s)	762, 1579
PaqCI	CACCTGC	1 cut(s)	1145
PcsI	WCGNNNNNNNCGW	1 cut(s)	1568
PdmI	GAANNNNTTC	2 cut(s)	569, 1325
PfoI	TCCNGGA	2 cut(s)	1018, 1333
PleI	GAGTC	2 cut(s)	1009, 1728
PpsI	GAGTC	2 cut(s)	1009, 1728
Ppu21I	YACGTR	1 cut(s)	989
PshBI	ATTAAT	1 cut(s)	1463
PsiI	TTATAA	2 cut(s)	828, 1665
Psp6I	CCWGG	2 cut(s)	1018, 1333
PspGI	CCWGG	2 cut(s)	1018, 1333
PspPI	GGNCC	2 cut(s)	176, 207
PstI	CTGCAG	1 cut(s)	1189
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	2 cut(s)	514, 743
RsaNI	GTAC	2 cut(s)	513, 742
RseI	CAYNNNNRTG	3 cut(s)	611, 1565, 1728
SaqAI	TTAA	4 cut(s)	585, 897, 1463, 1643
Sau3AI	GATC	5 cut(s)	356, 444, 652, 732, 1149
Sau96I	GGNCC	2 cut(s)	176, 207
SchI	GAGTC	2 cut(s)	1010, 1729
ScrFI	CCNGG	3 cut(s)	439, 1020, 1335
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	1185
SinI	GGWCC	2 cut(s)	176, 207
SmiMI	CAYNNNNRTG	3 cut(s)	611, 1565, 1728
Sse9I	AATT	5 cut(s)	7, 314, 671, 829, 1036
SspI	AATATT	2 cut(s)	85, 817
SspMI	CTAG	1 cut(s)	1409
StyD4I	CCNGG	3 cut(s)	437, 1018, 1333
StyI	CCWWGG	1 cut(s)	1566
TaaI	ACNGT	6 cut(s)	61, 517, 559, 885, 1305, 1641
TaiI	ACGT	3 cut(s)	405, 731, 991
TaqI	TCGA	9 cut(s)	25, 309, 455, 765, 1040, 1170, 1620, 1636, 1748
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	5 cut(s)	7, 314, 671, 829, 1036
TatI	WGTACW	2 cut(s)	512, 741
Tru1I	TTAA	4 cut(s)	585, 897, 1463, 1643
Tru9I	TTAA	4 cut(s)	585, 897, 1463, 1643
TscAI	CASTG	3 cut(s)	1194, 1606, 1681
TseFI	GTSAC	3 cut(s)	820, 1027, 1597
Tsp45I	GTSAC	3 cut(s)	820, 1027, 1597
TspRI	CASTG	3 cut(s)	1194, 1606, 1681
VpaK11BI	GGWCC	2 cut(s)	176, 207
VspI	ATTAAT	1 cut(s)	1463
XapI	RAATTY	1 cut(s)	7
XmnI	GAANNNNTTC	2 cut(s)	569, 1325
XspI	CTAG	1 cut(s)	1409
Zsp2I	ATGCAT	2 cut(s)	762, 1579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.