Prupe.6G186200_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
19475955 .. 19478538
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G186200.2

Sequence Viewer

Length: 1770 bp
ATGGCTGTTCTAGTTTCATTGACTGGCGAGACCCAATTCATTCACAGTCTCTGTGCAGTTGTAGTAAAGGGTCATTGGAACAACATCTTGAAACCCAAGATTGGTTCTAGCCTCAGCTCAGCAAACATTCACCAGGTACTTCTGCAACTCTCACTCCATGGCTATGGCCCTTCTCCTTCTTGGGCTTTCTTCAAATGGGTTCAATCAATTCCCACTTACAAGCACTCCTTGCAATGCTGCTGGACCATGATTCACATTCTCACTGAGCACAAACACTTCAAACCTGCACAGCAACTGCTTGAAAAAATTGCTTTTAAGGATTTCTTGTCATCACCGATGGTTTTGAATGCTTTAGTTCCAATCCAAGATGACCCAGAAGTGAATTCACATGTTTTGAGCTGGCTTGTGATATTTTATGCAAATTCTAAGATGAACCAAGATGCAATTCAGGTTTTTGAGCACATGAGGGTACATGGGTTTAAGCCCCACTTGCATGCTTGTTCTGCCTTGTTGAACTCTTTGGTTAAAGATAGGTTGACTAATATGGTATGGAAAGTTTACAAGAATATGATCCAGGCCGGGGTTGTGCCGAATGTTCACATATACAATGTGTTGATTCATGCTTGCTGCAAATCTGGGGATACAGAGAAGGCAGACAGTTTGGTTGGTGAGATGGAATTGAAGTGCATCTTTCCTGATCTTTTCACATATAATACGTTGATATCTCTGTATTCCAAAAGGGGTATGCACTATGAAGCTTTGTCTGTTCAAGATAGAATGGAGAGAGCAGGAGTTAGTCCTGATATGGTGACTTACAATTCTCTTATTTATGCGTTTTGTAGAGAAGGTAGGATGAGAGAAGCTGTAAAACTTTTTCGCGAAATCAAAGGTGCTACTCCTAACCATGTTACATACACGACATTAATTGATGGCTATTGTAGAGTTCATGACCTGGAAGAAGCTTTAAGATTGTGCGAGGTAATGAAGGCCAAGGGGTTGTATCCTGGAGTTGTTACTTATAATTCAATTCTCCGTAAGTTGTGCGAAGATGGCAGGATGCGGGATGCAAATAAACTTTTGAATGAGATGAGTGAAAGGAAAGTCAAACCTGACAATGTCACATGTAACACATTGGTTAATGCTTATTCTAAGATAGGAGACATGAGGTCTGCTGTGAAAGTGAAAGAGAGAATGTTGGCAGCTGGATTGAAGTTGGATGAGTTTACATATAAAGCACTCATTCATGGATTTTGCAAGGTGCTAGAGATGGAAAGTGCTAGAGATCTTTTATTTAGCATGCTTGACGCTGGATTTTCCCCTAGTTATTGCACCTATACATGGATTGTAGATGGTTACTGCAACAAAGGGAATGAGGAAGCAGTTATACGTCTACCAGATGAGTTTGTTAAAAAAGGTATTTATGTTGATGTCTCACTGTACAGGGCATTAATAAGAAGGTTATGTAAACGAGAAAGGGTGGATAGTGCTGAAAAGATTTTCAGTTTTATGGAAGAGAAGAGTATATCAGGAGACAGTGTTATATATACTAGTCTAGCATATGCTTACTTGAAAGCAGGAAAGTCAAGTGTAGTTTCAGTGTTGTTAGATGAAATGTACAAGAGGAGGTTGATGGTTACACGCAAGATCTATAGATGTTTCAATGCATCTTATGCCAGTGATAATGACATCATACGTCTATTTTGGGATCATATGGTTGAGAGAGGCCTAATGTCAAAAAATGTTATTAATAAGGAAATGCAGCAAACGTAA

Protein Analysis

590

Amino Acids

67.36

Weight (kDa)

8.86

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1020
Acc36I ACCTGC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 1390
AccII CGCG 1 cut(s) 879
AciI CCGC 1 cut(s) 1060
AclWI GGATC 2 cut(s) 565, 1713
AcsI RAATTY 2 cut(s) 382, 421
AfaI GTAC 4 cut(s) 138, 471, 1439, 1616
AfiI CCNNNNNNNGG 3 cut(s) 101, 580, 1338
AflIII ACRYGT 2 cut(s) 388, 1121
AhdI GACNNNNNGTC 1 cut(s) 1165
AhlI ACTAGT 1 cut(s) 1547
AjnI CCWGG 4 cut(s) 132, 573, 951, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AluBI AGCT 6 cut(s) 117, 399, 758, 863, 962, 1202
AluI AGCT 6 cut(s) 117, 399, 758, 863, 962, 1202
Alw21I GWGCWC 2 cut(s) 270, 462
Alw26I GTCTC 5 cut(s) 23, 53, 1152, 1435, 1524
AlwI GGATC 2 cut(s) 565, 1713
AlwNI CAGNNNCTG 2 cut(s) 51, 295
AoxI GGCC 4 cut(s) 166, 576, 987, 1723
ApeKI GCWGC 4 cut(s) 237, 627, 1199, 1759
ApoI RAATTY 2 cut(s) 382, 421
AseI ATTAAT 3 cut(s) 923, 1448, 1746
AspS9I GGNCC 2 cut(s) 167, 243
AsuC2I CCSGG 1 cut(s) 580
AsuHPI GGTGA 4 cut(s) 122, 324, 680, 820
AvaII GGWCC 1 cut(s) 243
BaeI ACNNNNGTAYC 2 cut(s) 461, 494
BarI GAAGNNNNNNTAC 2 cut(s) 1368, 1400
Bbv12I GWGCWC 2 cut(s) 270, 462
BbvCI CCTCAGC 1 cut(s) 113
BbvI GCAGC 3 cut(s) 224, 614, 1211
BccI CCATC 7 cut(s) 331, 667, 923, 1043, 1261, 1343, 1624
BciT130I CCWGG 4 cut(s) 134, 575, 953, 1005
BciVI GTATCC 2 cut(s) 634, 1011
BcnI CCSGG 1 cut(s) 580
BcoDI GTCTC 5 cut(s) 23, 53, 1152, 1435, 1524
BcuI ACTAGT 1 cut(s) 1547
BfaI CTAG 7 cut(s) 11, 108, 1262, 1278, 1320, 1548, 1553
BfmI CTRYAG 1 cut(s) 1648
BfuAI ACCTGC 1 cut(s) 292
BfuI GTATCC 2 cut(s) 634, 1011
BglII AGATCT 2 cut(s) 1282, 1644
BisI GCNGC 4 cut(s) 238, 628, 1200, 1760
BlpI GCTNAGC 1 cut(s) 118
BlsI GCNGC 4 cut(s) 239, 629, 1201, 1761
Bme1390I CCNGG 5 cut(s) 134, 575, 580, 953, 1005
Bme18I GGWCC 1 cut(s) 243
BmeRI GACNNNNNGTC 1 cut(s) 1165
BmgT120I GGNCC 2 cut(s) 167, 243
BmrFI CCNGG 5 cut(s) 134, 575, 580, 953, 1005
BmsI GCATC 5 cut(s) 430, 696, 1047, 1054, 1673
BpmI CTGGAG 1 cut(s) 1026
Bpu10I CCTNAGC 1 cut(s) 113
Bpu1102I GCTNAGC 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 580
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 157, 579, 990
BsaXI ACNNNNNCTCC 6 cut(s) 138, 168, 209, 239, 1521, 1551
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 580, 1338
Bse1I ACTGG 2 cut(s) 28, 1674
Bse3DI GCAATG 1 cut(s) 239
BseBI CCWGG 4 cut(s) 134, 575, 953, 1005
BseDI CCNNGG 3 cut(s) 157, 579, 990
BseGI GGATG 4 cut(s) 858, 1062, 1069, 1222
BseLI CCNNNNNNNGG 3 cut(s) 101, 580, 1338
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 3 cut(s) 127, 132, 255
BseNI ACTGG 2 cut(s) 28, 1674
BseRI GAGGAG 1 cut(s) 1636
BseXI GCAGC 3 cut(s) 224, 614, 1211
BsgI GTGCAG 2 cut(s) 75, 270
Bsh1236I CGCG 1 cut(s) 879
BshFI GGCC 4 cut(s) 168, 578, 989, 1725
BsiHKAI GWGCWC 2 cut(s) 270, 462
BsiSI CCGG 1 cut(s) 579
BslI CCNNNNNNNGG 3 cut(s) 101, 580, 1338
BsmAI GTCTC 5 cut(s) 23, 53, 1152, 1435, 1524
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 4 cut(s) 168, 578, 989, 1725
Bso31I GGTCTC 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 270, 462
Bsp1407I TGTACA 2 cut(s) 1437, 1614
Bsp143I GATC 5 cut(s) 570, 697, 1282, 1644, 1705
Bsp1720I GCTNAGC 1 cut(s) 118
Bsp19I CCATGG 1 cut(s) 157
Bsp68I TCGCGA 1 cut(s) 879
BspACI CCGC 1 cut(s) 1060
BspANI GGCC 4 cut(s) 168, 578, 989, 1725
BspCNI CTCAG 3 cut(s) 126, 131, 256
BspFNI CGCG 1 cut(s) 879
BspHI TCATGA 1 cut(s) 946
BspMI ACCTGC 1 cut(s) 292
BspPI GGATC 2 cut(s) 565, 1713
BspTNI GGTCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 239
BsrGI TGTACA 2 cut(s) 1437, 1614
BsrI ACTGG 2 cut(s) 28, 1674
BssECI CCNNGG 3 cut(s) 157, 579, 990
BssMI GATC 5 cut(s) 570, 697, 1282, 1644, 1705
BssT1I CCWWGG 2 cut(s) 157, 990
Bst2UI CCWGG 4 cut(s) 134, 575, 953, 1005
Bst4CI ACNGT 4 cut(s) 47, 659, 1437, 1535
Bst6I CTCTTC 2 cut(s) 1506, 1511
BstAPI GCANNNNNTGC 2 cut(s) 229, 1670
BstAUI TGTACA 2 cut(s) 1437, 1614
BstC8I GCNNGC 4 cut(s) 401, 495, 625, 1298
BstDEI CTNAG 5 cut(s) 113, 118, 264, 426, 1149
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 4 cut(s) 858, 1062, 1069, 1222
BstFNI CGCG 1 cut(s) 879
BstKTI GATC 5 cut(s) 573, 700, 1285, 1647, 1708
BstMAI GTCTC 5 cut(s) 23, 53, 1152, 1435, 1524
BstMBI GATC 5 cut(s) 570, 697, 1282, 1644, 1705
BstMWI GCNNNNNNNGC 5 cut(s) 229, 490, 503, 1050, 1670
BstNI CCWGG 4 cut(s) 134, 575, 953, 1005
BstNSI RCATGY 4 cut(s) 392, 497, 1125, 1300
BstSCI CCNGG 5 cut(s) 132, 573, 578, 951, 1003
BstSFI CTRYAG 1 cut(s) 1648
BstUI CGCG 1 cut(s) 879
BstV1I GCAGC 3 cut(s) 224, 614, 1211
BstX2I RGATCY 2 cut(s) 1282, 1644
BstXI CCANNNNNNTGG 1 cut(s) 164
BstYI RGATCY 2 cut(s) 1282, 1644
BsuI GTATCC 2 cut(s) 634, 1011
BsuRI GGCC 4 cut(s) 168, 578, 989, 1725
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 4 cut(s) 858, 1062, 1069, 1222
BtsIMutI CAGTG 5 cut(s) 261, 1433, 1540, 1602, 1681
BtuMI TCGCGA 1 cut(s) 879
BveI ACCTGC 1 cut(s) 292
Cac8I GCNNGC 4 cut(s) 401, 495, 625, 1298
CaiI CAGNNNCTG 2 cut(s) 51, 295
CciI TCATGA 1 cut(s) 946
Cfr13I GGNCC 2 cut(s) 167, 243
CseI GACGC 1 cut(s) 1313
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 4 cut(s) 137, 470, 1438, 1615
CviQI GTAC 4 cut(s) 137, 470, 1438, 1615
DdeI CTNAG 5 cut(s) 113, 118, 264, 426, 1149
DpnI GATC 5 cut(s) 572, 699, 1284, 1646, 1707
DpnII GATC 5 cut(s) 570, 697, 1282, 1644, 1705
DriI GACNNNNNGTC 1 cut(s) 1165
Eam1104I CTCTTC 2 cut(s) 1506, 1511
Eam1105I GACNNNNNGTC 1 cut(s) 1165
EarI CTCTTC 2 cut(s) 1506, 1511
Eco130I CCWWGG 2 cut(s) 157, 990
Eco147I AGGCCT 1 cut(s) 1725
Eco31I GGTCTC 1 cut(s) 23
Eco32I GATATC 1 cut(s) 723
Eco47I GGWCC 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 382
EcoRII CCWGG 4 cut(s) 132, 573, 951, 1003
EcoRV GATATC 1 cut(s) 723
EcoT14I CCWWGG 2 cut(s) 157, 990
EcoT22I ATGCAT 1 cut(s) 1666
ErhI CCWWGG 2 cut(s) 157, 990
FalI AAGNNNNNCTT 8 cut(s) 212, 244, 308, 340, 473, 505, 674, 706
FauI CCCGC 1 cut(s) 1053
FauNDI CATATG 2 cut(s) 1558, 1710
FblI GTMKAC 1 cut(s) 1390
Fnu4HI GCNGC 4 cut(s) 238, 628, 1200, 1760
FokI GGATG 4 cut(s) 865, 1069, 1076, 1229
Fsp4HI GCNGC 4 cut(s) 238, 628, 1200, 1760
FspBI CTAG 7 cut(s) 11, 108, 1262, 1278, 1320, 1548, 1553
GluI GCNGC 4 cut(s) 238, 628, 1200, 1760
GsuI CTGGAG 1 cut(s) 1026
HaeIII GGCC 4 cut(s) 168, 578, 989, 1725
HapII CCGG 1 cut(s) 579
HgaI GACGC 1 cut(s) 1313
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HindIII AAGCTT 2 cut(s) 756, 960
HinfI GANTC 2 cut(s) 250, 616
HpaII CCGG 1 cut(s) 579
HphI GGTGA 4 cut(s) 122, 324, 680, 820
Hpy166II GTNNAC 6 cut(s) 537, 559, 598, 1224, 1391, 1466
Hpy188III TCNNGA 7 cut(s) 88, 695, 770, 800, 878, 947, 1527
Hpy8I GTNNAC 6 cut(s) 537, 559, 598, 1224, 1391, 1466
HpyAV CCTTC 6 cut(s) 180, 186, 643, 839, 979, 1449
HpyCH4III ACNGT 4 cut(s) 47, 659, 1437, 1535
HpyCH4IV ACGT 4 cut(s) 716, 1387, 1693, 1766
HpyF10VI GCNNNNNNNGC 5 cut(s) 229, 490, 503, 1050, 1670
HpyF3I CTNAG 5 cut(s) 113, 118, 264, 426, 1149
HpySE526I ACGT 4 cut(s) 716, 1387, 1693, 1766
Kzo9I GATC 5 cut(s) 570, 697, 1282, 1644, 1705
Lsp1109I GCAGC 3 cut(s) 224, 614, 1211
LweI GCATC 5 cut(s) 430, 696, 1047, 1054, 1673
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 7 cut(s) 11, 108, 1262, 1278, 1320, 1548, 1553
MaeII ACGT 4 cut(s) 716, 1387, 1693, 1766
MaeIII GTNAC 7 cut(s) 808, 907, 1012, 1117, 1124, 1352, 1633
MalI GATC 5 cut(s) 572, 699, 1284, 1646, 1707
MboI GATC 5 cut(s) 570, 697, 1282, 1644, 1705
MboII GAAGA 5 cut(s) 181, 968, 1058, 1523, 1528
MflI RGATCY 2 cut(s) 1282, 1644
MhlI GDGCHC 2 cut(s) 270, 462
MmeI TCCRAC 1 cut(s) 1194
MnlI CCTC 8 cut(s) 122, 459, 970, 1158, 1366, 1614, 1617, 1715
Mph1103I ATGCAT 1 cut(s) 1666
MseI TTAA 9 cut(s) 315, 480, 525, 923, 965, 1137, 1407, 1448, 1746
MslI CAYNNNNRTG 2 cut(s) 162, 492
MspA1I CMGCKG 1 cut(s) 1202
MspI CCGG 1 cut(s) 579
MspR9I CCNGG 5 cut(s) 134, 575, 580, 953, 1005
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 4 cut(s) 134, 575, 953, 1005
MvnI CGCG 1 cut(s) 879
MwoI GCNNNNNNNGC 5 cut(s) 229, 490, 503, 1050, 1670
NciI CCSGG 1 cut(s) 580
NcoI CCATGG 1 cut(s) 157
NdeI CATATG 2 cut(s) 1558, 1710
NdeII GATC 5 cut(s) 570, 697, 1282, 1644, 1705
NmuCI GTSAC 2 cut(s) 808, 1117
NruI TCGCGA 1 cut(s) 879
NsiI ATGCAT 1 cut(s) 1666
NspI RCATGY 4 cut(s) 392, 497, 1125, 1300
PaeI GCATGC 2 cut(s) 497, 1300
PagI TCATGA 1 cut(s) 946
PceI AGGCCT 1 cut(s) 1725
PciI ACATGT 2 cut(s) 388, 1121
PctI GAATGC 1 cut(s) 352
PfeI GAWTC 2 cut(s) 250, 616
PflFI GACNNNGTC 1 cut(s) 1115
PfoI TCCNGGA 1 cut(s) 1003
PkrI GCNGC 4 cut(s) 239, 629, 1201, 1761
PscI ACATGT 2 cut(s) 388, 1121
PshBI ATTAAT 3 cut(s) 923, 1448, 1746
PsiI TTATAA 1 cut(s) 1020
Psp6I CCWGG 4 cut(s) 132, 573, 951, 1003
PspGI CCWGG 4 cut(s) 132, 573, 951, 1003
PspPI GGNCC 2 cut(s) 167, 243
PstNI CAGNNNCTG 2 cut(s) 51, 295
PsuI RGATCY 2 cut(s) 1282, 1644
PsyI GACNNNGTC 1 cut(s) 1115
PvuII CAGCTG 1 cut(s) 1202
RruI TCGCGA 1 cut(s) 879
RsaI GTAC 4 cut(s) 138, 471, 1439, 1616
RsaNI GTAC 4 cut(s) 137, 470, 1438, 1615
RseI CAYNNNNRTG 2 cut(s) 162, 492
SaqAI TTAA 9 cut(s) 315, 480, 525, 923, 965, 1137, 1407, 1448, 1746
SatI GCNGC 4 cut(s) 238, 628, 1200, 1760
Sau3AI GATC 5 cut(s) 570, 697, 1282, 1644, 1705
Sau96I GGNCC 2 cut(s) 167, 243
ScrFI CCNGG 5 cut(s) 134, 575, 580, 953, 1005
SduI GDGCHC 2 cut(s) 270, 462
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 5 cut(s) 430, 696, 1047, 1054, 1673
SfcI CTRYAG 1 cut(s) 1648
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 2 cut(s) 162, 492
SpeI ACTAGT 1 cut(s) 1547
SphI GCATGC 2 cut(s) 497, 1300
SseBI AGGCCT 1 cut(s) 1725
SsiI CCGC 1 cut(s) 1060
SspMI CTAG 7 cut(s) 11, 108, 1262, 1278, 1320, 1548, 1553
StuI AGGCCT 1 cut(s) 1725
StyD4I CCNGG 5 cut(s) 132, 573, 578, 951, 1003
StyI CCWWGG 2 cut(s) 157, 990
TaaI ACNGT 4 cut(s) 47, 659, 1437, 1535
TaiI ACGT 4 cut(s) 719, 1390, 1696, 1769
TatI WGTACW 2 cut(s) 1437, 1614
TfiI GAWTC 2 cut(s) 250, 616
Tru1I TTAA 9 cut(s) 315, 480, 525, 923, 965, 1137, 1407, 1448, 1746
Tru9I TTAA 9 cut(s) 315, 480, 525, 923, 965, 1137, 1407, 1448, 1746
TscAI CASTG 5 cut(s) 268, 1440, 1540, 1602, 1681
TseFI GTSAC 2 cut(s) 808, 1117
TseI GCWGC 4 cut(s) 237, 627, 1199, 1759
Tsp45I GTSAC 2 cut(s) 808, 1117
TspDTI ATGAA 9 cut(s) 6, 28, 446, 608, 768, 935, 998, 1232, 1623
TspGWI ACGGA 1 cut(s) 1022
TspRI CASTG 5 cut(s) 268, 1440, 1540, 1602, 1681
Tth111I GACNNNGTC 1 cut(s) 1115
VpaK11BI GGWCC 1 cut(s) 243
VspI ATTAAT 3 cut(s) 923, 1448, 1746
XapI RAATTY 2 cut(s) 382, 421
XceI RCATGY 4 cut(s) 392, 497, 1125, 1300
XmiI GTMKAC 1 cut(s) 1390
XspI CTAG 7 cut(s) 11, 108, 1262, 1278, 1320, 1548, 1553
Zsp2I ATGCAT 1 cut(s) 1666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.