Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010203

Physical Location & Seq

Genomic Coordinates Reverse (-)

10612504 .. 10613318

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1028900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTTGTTGCAAGTCTGGGGGGTGTAGAGAAGGCAGAGAGTTTGCTGAGTGAGATGGAATTCAAGTGTGTCTTTCCTGATCTTTTCACATACAATACGTTGATATCACTGTATTCTAAAAGGGGTATGCACTATGAAGCTTTGTCTGTTAGAGATAGAATGGAAAGAGCAGGAGTTACCCCTGATATGATACAAGATATGAGGTCTGGTGTCAATGTGAAGGATAGGATGTTGGCAGCTGGACTGCAGCTGGATGAGTTTACATATAAAGCACTTGTTAATGGATTTTGCAAGGTTCTGGAGATGGACAGTGCTAAAGATATTTTATTTGCCATGCTTGATGTGGGAATTTATGCTAGTTATTGCCCCTATACATGGATTATAGATGGTTACTGTAACCAAGAGAATGAAGCAGTTATAAGAGTTCCAGATGAGAAGGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

149

Amino Acids

16.77

Weight (kDa)

4.7

Isoelectric Point (pI)

25.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	14 - 64	6.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	22 - 55	1.5e-06	PPR repeat
PPR_2	PF13041	26 - 63	9e-09	PPR repeat family
PPR	PF01535	29 - 59	2.6e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38730
fragaria_vesca	FvH4_1g20970
malus_domestica	MD01G1028900.v1.1 MD15G1324700.v1.1
prunus_persica	Prupe.6G186200_v2.0.a1 Prupe.6G186200_v2.0.a1
pyrus_communis	pycom01g05700 pycom15g28650
rosa_chinensis	RchiOBHm_Chr2g0114451 RchiOBHm_Chr6g0269561
rosa_laevigata	RLG00000018102
rosa_multiflora	Rmu_sc0000431.1_g000034 Rmu_sc0003151.1_g000025
rosa_roxburghii	Rroxscaffold_2G00130160
rosa_rugosa	Rorug02G0190400 Rorug02G0190500
rosa_samantha	Rh2AG247700 Rh2BG257500 Rh2CG251200 Rh2DG255600
rosa_wichuraiana	Rw2G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
AcsI	RAATTY	2 cut(s)	59, 348
AfiI	CCNNNNNNNGG	1 cut(s)	375
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	3 cut(s)	140, 239, 250
AluI	AGCT	3 cut(s)	140, 239, 250
ApeKI	GCWGC	2 cut(s)	236, 247
ApoI	RAATTY	2 cut(s)	59, 348
BbvI	GCAGC	2 cut(s)	248, 259
BccI	CCATC	3 cut(s)	49, 298, 380
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	245
BisI	GCNGC	2 cut(s)	237, 248
BlsI	GCNGC	2 cut(s)	238, 249
BpmI	CTGGAG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
BseGI	GGATG	2 cut(s)	234, 259
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	248, 259
BslI	CCNNNNNNNGG	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	249
BssMI	GATC	1 cut(s)	79
Bst4CI	ACNGT	3 cut(s)	111, 311, 395
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	234, 259
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	248, 259
BtsCI	GGATG	2 cut(s)	234, 259
BtsIMutI	CAGTG	2 cut(s)	107, 316
CviAII	CATG	2 cut(s)	334, 375
CviJI	RGCY	3 cut(s)	140, 239, 250
CviKI_1	RGCY	3 cut(s)	140, 239, 250
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	59
EcoRV	GATATC	1 cut(s)	105
FaeI	CATG	2 cut(s)	337, 378
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FatI	CATG	2 cut(s)	333, 374
Fnu4HI	GCNGC	2 cut(s)	237, 248
FokI	GGATG	2 cut(s)	241, 266
Fsp4HI	GCNGC	2 cut(s)	237, 248
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	2 cut(s)	237, 248
GsuI	CTGGAG	1 cut(s)	320
Hin1II	CATG	2 cut(s)	337, 378
HindIII	AAGCTT	1 cut(s)	138
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188III	TCNNGA	3 cut(s)	77, 299, 428
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	3 cut(s)	25, 214, 430
HpyCH4III	ACNGT	3 cut(s)	111, 311, 395
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	4 cut(s)	11, 130, 247, 291
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	337, 378
Kzo9I	GATC	1 cut(s)	79
LpnPI	CCDG	9 cut(s)	2, 90, 156, 192, 195, 225, 236, 284, 441
Lsp1109I	GCAGC	2 cut(s)	248, 259
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	3 cut(s)	175, 389, 395
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MluCI	AATT	2 cut(s)	59, 348
MnlI	CCTC	1 cut(s)	195
MseI	TTAA	1 cut(s)	279
MspA1I	CMGCKG	2 cut(s)	239, 250
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	337, 378
PkrI	GCNGC	2 cut(s)	238, 249
PsiI	TTATAA	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	249
PvuII	CAGCTG	2 cut(s)	239, 250
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	2 cut(s)	237, 248
Sau3AI	GATC	1 cut(s)	79
SetI	ASST	7 cut(s)	101, 142, 206, 241, 252, 297, 441
SfcI	CTRYAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	59, 348
SspMI	CTAG	1 cut(s)	357
TaaI	ACNGT	3 cut(s)	111, 311, 395
TaiI	ACGT	1 cut(s)	101
TasI	AATT	2 cut(s)	59, 348
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	2 cut(s)	114, 316
TseI	GCWGC	2 cut(s)	236, 247
TspDTI	ATGAA	2 cut(s)	150, 423
TspRI	CASTG	2 cut(s)	114, 316
XapI	RAATTY	2 cut(s)	59, 348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.