Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010203

Physical Location & Seq

Genomic Coordinates Forward (+)

34573675 .. 34577609

Gene Structure 3935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1324700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

ATGGCTGCTTTAATTTCATTGACTGGTGAGACTCAGTTCATTCACAGTGTGTGCGCAATTGTGGTAAAGGGTCAGTGGAGCAACCTCTTGAAACCCAACAATGATTTTCTTCTCAGCTCGGCAACCATTCACCAGGTACTACTGCAACTCTCATTCCATGGCTATGGCCTTTCTCCTTCCTGGGCTTTCTTCAAATGGGTCGAATCACTTCCCACTTGCAAGCACTCCTTGCAATGTTCTTGGACTATGATTCACATCCTCACCAAGCACACCCACTTCAAACCTGCACACCAACTGCTTGAAAAAATTGCCCTTAAGGATTTCTTGTCTTCTCCGTCGGTTTTGAATGCTTTGGTTCGGACCAATGACGACCGTGATGTGAATTCACATGTTTTGAGCTGGCTTGTGATCTTTTATGCTAATTCTAAGATGACCCAAGATGCAATTCAGGTTTTGGAGCTTATGAGGATTCATGGGTTTAAGCCCCATTTGCATGCTTGTACTGCCTTATTGAGTTCTTTGGTTAAAGATAGGATGACTAATATGGTATGGAAAGTTTACAAGAATATGATCAAGGCCGGGGTTGTGCCAAATGTTCATTTGTACAATGTGTTGATTCATGCTTGTTGCAAGTCTGGGGATGTAGAGAAGGCAGAGAGTTTGCTAAGTGAGATGGAATTCAAGTGTGTCTTTCCTGATCTTTTCACATATAATACGTTGATATCGCTGTATTCCAAAAGGGGTATGCACTACGAAGCTTTGTCTGTTCAGGATAGAATGGAAAGAGCAGGAGTTAGCCCTGATATGGTGACATACAATTCTCTTATGTATGCGTTTTGTAGAGAAGGTAGGATGAGGGAGGCTGTAAGACTTTTCCGTGAAATCAAAGGTGCTACTCCGAACCATATAAGTTACACCACATTAATTGATGGGTATTGTAGAGTGAATGACCTGGAAGAAGCTTTAAGGTTGTGCGAGGTAATGAAGGCCAAAGGACTGTATCCAGGAGTTGTTACTTATAATTCAATTCTTCGCAAGTTGTGTGAACAAGGCAGGATGAGGGATGCAAATAAACTTTTGAATGAGATGAGTGATAGGAACGTTGAACCTGACAATGTCACGTGCAACACATTGATTAATGCTTATTGTAAGATAGGAGATATGAGGTCTGCTGTCAATGTGAAGGACAGGATGTTGGCAGCTGGACTGAAGCTGGACGAGTTTACACATAAAGCACTCATTCATGGATTTTGCCAGGTTCTGGAAATGGACAGTGCTAAAGATATTTTATTTAGCATGCTTGGTGCAGGAATTTCTCCTAGTTATTGCACCTATACATGGATTATAGATGGTTACTGTAACCAGGGGAATGAAGCAGCAGTTATAAGACTACCGGAGAAAGGTCTTTGTGCTGATGTCTCTATGTACAGGGCATTAATAAGAAGGTTATGTAAACGTGAAAGGGTTGATGAAGCGGAAAAGGTTTTCAATCTTATGCGAGAGAAAGGTATATCAGGAGACAGTGTAATATATACTAGTCTTGCATATGCTTACTTGAAAGCAGGAAAGTCCTGTGTAGTTTCAGCGATGCTAGATGAAATGTACAAGAGGAGGTTGATGGTGACACGCAAGATCTATAGATCTTTCAGTGCTTCTTATGCCAGAGACAATGATAGCATACGCCTGTTTTGGGATCATATGGTAAAGAGAGGCCTAATGTCAAAAAATGTTATTACTAAGGAAATGCAGCAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

586

Amino Acids

66.66

Weight (kDa)

8.95

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	128 - 221	3.3e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	151 - 210	3.8e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	158 - 286	2.6e-13	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	194 - 226	1.3e-10	PPR repeat
PPR_2	PF13041	197 - 242	3.1e-14	PPR repeat family
PPR	PF01535	202 - 226	4.2e-08	PPR repeat
PPR_3	PF13812	220 - 279	6.1e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	232 - 281	2.6e-14	PPR repeat family
PPR	PF01535	235 - 265	6.2e-07	PPR repeat
PPR_1	PF12854	264 - 295	3.6e-12	PPR repeat
PPR_2	PF13041	267 - 314	5e-15	PPR repeat family
PPR	PF01535	270 - 296	7.9e-08	PPR repeat
PPR_3	PF13812	295 - 345	1.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	296 - 329	2.7e-11	PPR repeat
TPR_24	PF23276	297 - 394	6.4e-12	Fungal tetratrico peptide repeats
PPR_2	PF13041	300 - 348	9.2e-15	PPR repeat family
PPR	PF01535	303 - 333	1e-07	PPR repeat
PPR_long	PF17177	318 - 414	4.4e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	331 - 364	4.3e-09	PPR repeat
PPR_2	PF13041	335 - 374	3.6e-13	PPR repeat family
PPR_3	PF13812	358 - 402	5.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	366 - 398	4.2e-08	PPR repeat
PPR_2	PF13041	370 - 419	6.2e-14	PPR repeat family
PPR	PF01535	373 - 402	6e-06	PPR repeat
PPR_3	PF13812	394 - 452	5.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	412 - 454	1.4e-06	PPR repeat family
PPR_1	PF12854	467 - 500	4.1e-08	PPR repeat
PPR_2	PF13041	472 - 517	2.9e-08	PPR repeat family
PPR	PF01535	475 - 504	2.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38730
fragaria_vesca	FvH4_1g20970
malus_domestica	MD01G1028900.v1.1 MD15G1324700.v1.1
prunus_persica	Prupe.6G186200_v2.0.a1 Prupe.6G186200_v2.0.a1
pyrus_communis	pycom01g05700 pycom15g28650
rosa_chinensis	RchiOBHm_Chr2g0114451 RchiOBHm_Chr6g0269561
rosa_laevigata	RLG00000018102
rosa_multiflora	Rmu_sc0000431.1_g000034 Rmu_sc0003151.1_g000025
rosa_roxburghii	Rroxscaffold_2G00130160
rosa_rugosa	Rorug02G0190400 Rorug02G0190500
rosa_samantha	Rh2AG247700 Rh2BG257500 Rh2CG251200 Rh2DG255600
rosa_wichuraiana	Rw2G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1020, 1385
Acc16I	TGCGCA	1 cut(s)	55
Acc36I	ACCTGC	1 cut(s)	292
AccB7I	CCANNNNNTGG	1 cut(s)	1261
AciI	CCGC	1 cut(s)	1475
AclI	AACGTT	1 cut(s)	1101
AclWI	GGATC	1 cut(s)	1701
AcsI	RAATTY	3 cut(s)	382, 677, 1311
AcuI	CTGAAG	1 cut(s)	1229
AcvI	CACGTG	1 cut(s)	1122
AdeI	CACNNNGTG	1 cut(s)	49
AfaI	GTAC	5 cut(s)	138, 502, 605, 1427, 1604
AfiI	CCNNNNNNNGG	5 cut(s)	805, 1261, 1338, 1400, 1690
AflII	CTTAAG	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	388
AhlI	ACTAGT	1 cut(s)	1535
AjnI	CCWGG	6 cut(s)	132, 179, 951, 1003, 1254, 1362
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	7 cut(s)	117, 399, 460, 758, 962, 1202, 1213
AluI	AGCT	7 cut(s)	117, 399, 460, 758, 962, 1202, 1213
Alw26I	GTCTC	4 cut(s)	23, 1423, 1512, 1659
AlwI	GGATC	1 cut(s)	1701
AlwNI	CAGNNNCTG	1 cut(s)	1261
AoxI	GGCC	4 cut(s)	166, 576, 987, 1711
ApeKI	GCWGC	4 cut(s)	5, 1199, 1376, 1747
ApoI	RAATTY	3 cut(s)	382, 677, 1311
AseI	ATTAAT	3 cut(s)	923, 1137, 1436
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	5 cut(s)	38, 122, 253, 820, 1633
AvaII	GGWCC	1 cut(s)	360
BbrPI	CACGTG	1 cut(s)	1122
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	1211, 1388
BccI	CCATC	4 cut(s)	667, 923, 1343, 1612
BciT130I	CCWGG	6 cut(s)	134, 181, 953, 1005, 1256, 1364
BciVI	GTATCC	1 cut(s)	1011
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	580
BcoDI	GTCTC	4 cut(s)	23, 1423, 1512, 1659
BcuI	ACTAGT	1 cut(s)	1535
BfaI	CTAG	3 cut(s)	1320, 1536, 1592
BfmI	CTRYAG	1 cut(s)	1636
BfrI	CTTAAG	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	292
BfuI	GTATCC	1 cut(s)	1011
BglII	AGATCT	2 cut(s)	1632, 1640
BisI	GCNGC	4 cut(s)	6, 1200, 1377, 1748
BlsI	GCNGC	4 cut(s)	7, 1201, 1378, 1749
Bme1390I	CCNGG	7 cut(s)	134, 181, 580, 953, 1005, 1256, 1364
Bme18I	GGWCC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	360
BmrFI	CCNGG	7 cut(s)	134, 181, 580, 953, 1005, 1256, 1364
BmsI	GCATC	3 cut(s)	430, 1054, 1578
BpiI	GAAGAC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	580
BsaAI	YACGTR	1 cut(s)	1122
BsaBI	GATNNNNATC	1 cut(s)	254
BsaJI	CCNNGG	4 cut(s)	157, 180, 579, 1363
BsaWI	WCCGGW	1 cut(s)	1393
BsaXI	ACNNNNNCTCC	2 cut(s)	1509, 1539
Bsc4I	CCNNNNNNNGG	5 cut(s)	805, 1261, 1338, 1400, 1690
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	239
Bse8I	GATNNNNATC	1 cut(s)	254
BseBI	CCWGG	6 cut(s)	134, 181, 953, 1005, 1256, 1364
BseDI	CCNNGG	4 cut(s)	157, 180, 579, 1363
BseGI	GGATG	7 cut(s)	255, 540, 646, 858, 1062, 1069, 1197
BseJI	GATNNNNATC	1 cut(s)	254
BseLI	CCNNNNNNNGG	5 cut(s)	805, 1261, 1338, 1400, 1690
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	2 cut(s)	47, 127
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	1624
BseXI	GCAGC	2 cut(s)	1211, 1388
BsgI	GTGCAG	2 cut(s)	270, 1326
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	4 cut(s)	168, 578, 989, 1713
BsiEI	CGRYCG	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	579, 1394
BslI	CCNNNNNNNGG	5 cut(s)	805, 1261, 1338, 1400, 1690
BsmAI	GTCTC	4 cut(s)	23, 1423, 1512, 1659
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	4 cut(s)	168, 578, 989, 1713
Bsp1407I	TGTACA	3 cut(s)	603, 1425, 1602
Bsp143I	GATC	6 cut(s)	408, 570, 697, 1632, 1640, 1693
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	1 cut(s)	1475
BspANI	GGCC	4 cut(s)	168, 578, 989, 1713
BspCNI	CTCAG	2 cut(s)	46, 126
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	1 cut(s)	1701
BspTI	CTTAAG	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	239
BsrGI	TGTACA	3 cut(s)	603, 1425, 1602
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	4 cut(s)	157, 180, 579, 1363
BssMI	GATC	6 cut(s)	408, 570, 697, 1632, 1640, 1693
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	6 cut(s)	134, 181, 953, 1005, 1256, 1364
Bst4CI	ACNGT	6 cut(s)	47, 374, 999, 1274, 1358, 1523
BstAFI	CTTAAG	1 cut(s)	314
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstAUI	TGTACA	3 cut(s)	603, 1425, 1602
BstBAI	YACGTR	1 cut(s)	1122
BstC8I	GCNNGC	4 cut(s)	221, 401, 495, 1298
BstDEI	CTNAG	5 cut(s)	33, 113, 426, 665, 1737
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	7 cut(s)	255, 540, 646, 858, 1062, 1069, 1197
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	6 cut(s)	411, 573, 700, 1635, 1643, 1696
BstMAI	GTCTC	4 cut(s)	23, 1423, 1512, 1659
BstMBI	GATC	6 cut(s)	408, 570, 697, 1632, 1640, 1693
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	4 cut(s)	229, 490, 503, 1658
BstNI	CCWGG	6 cut(s)	134, 181, 953, 1005, 1256, 1364
BstNSI	RCATGY	3 cut(s)	392, 497, 1300
BstSCI	CCNGG	7 cut(s)	132, 179, 578, 951, 1003, 1254, 1362
BstSFI	CTRYAG	1 cut(s)	1636
BstV1I	GCAGC	2 cut(s)	1211, 1388
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	2 cut(s)	1632, 1640
BstXI	CCANNNNNNTGG	1 cut(s)	164
BstYI	RGATCY	2 cut(s)	1632, 1640
BsuI	GTATCC	1 cut(s)	1011
BsuRI	GGCC	4 cut(s)	168, 578, 989, 1713
BtgI	CCRYGG	1 cut(s)	157
BtgZI	GCGATG	1 cut(s)	1601
BtsCI	GGATG	7 cut(s)	255, 540, 646, 858, 1062, 1069, 1197
BtsIMutI	CAGTG	5 cut(s)	52, 80, 1279, 1528, 1654
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	4 cut(s)	221, 401, 495, 1298
CaiI	CAGNNNCTG	1 cut(s)	1261
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	360
CsiI	ACCWGGT	1 cut(s)	132
Csp6I	GTAC	5 cut(s)	137, 501, 604, 1426, 1603
CspCI	CAANNNNNGTGG	2 cut(s)	907, 942
CviAII	CATG	8 cut(s)	158, 389, 473, 494, 620, 1244, 1297, 1338
CviQI	GTAC	5 cut(s)	137, 501, 604, 1426, 1603
DdeI	CTNAG	5 cut(s)	33, 113, 426, 665, 1737
DpnI	GATC	6 cut(s)	410, 572, 699, 1634, 1642, 1695
DpnII	GATC	6 cut(s)	408, 570, 697, 1632, 1640, 1693
DraIII	CACNNNGTG	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	1713
Eco32I	GATATC	1 cut(s)	723
Eco47I	GGWCC	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	1229
Eco72I	CACGTG	1 cut(s)	1122
EcoRI	GAATTC	2 cut(s)	382, 677
EcoRII	CCWGG	6 cut(s)	132, 179, 951, 1003, 1254, 1362
EcoRV	GATATC	1 cut(s)	723
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	8 cut(s)	161, 392, 476, 497, 623, 1247, 1300, 1341
FalI	AAGNNNNNCTT	6 cut(s)	212, 244, 308, 340, 674, 706
FatI	CATG	8 cut(s)	157, 388, 472, 493, 619, 1243, 1296, 1337
FauNDI	CATATG	2 cut(s)	1546, 1698
FbaI	TGATCA	1 cut(s)	570
Fnu4HI	GCNGC	4 cut(s)	6, 1200, 1377, 1748
FokI	GGATG	7 cut(s)	242, 547, 653, 865, 1069, 1076, 1204
Fsp4HI	GCNGC	4 cut(s)	6, 1200, 1377, 1748
FspBI	CTAG	3 cut(s)	1320, 1536, 1592
FspI	TGCGCA	1 cut(s)	55
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	4 cut(s)	6, 1200, 1377, 1748
HaeIII	GGCC	4 cut(s)	168, 578, 989, 1713
HapII	CCGG	2 cut(s)	579, 1394
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	8 cut(s)	161, 392, 476, 497, 623, 1247, 1300, 1341
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HindIII	AAGCTT	2 cut(s)	756, 960
HinfI	GANTC	5 cut(s)	31, 203, 250, 469, 616
HpaII	CCGG	2 cut(s)	579, 1394
HphI	GGTGA	5 cut(s)	38, 122, 253, 820, 1633
Hpy166II	GTNNAC	4 cut(s)	559, 1046, 1224, 1454
Hpy188I	TCNGA	2 cut(s)	360, 900
Hpy188III	TCNNGA	5 cut(s)	88, 695, 770, 1262, 1515
Hpy8I	GTNNAC	4 cut(s)	559, 1046, 1224, 1454
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	6 cut(s)	186, 643, 839, 979, 1177, 1437
HpyCH4III	ACNGT	6 cut(s)	47, 374, 999, 1274, 1358, 1523
HpyCH4IV	ACGT	4 cut(s)	716, 1101, 1121, 1456
HpyF10VI	GCNNNNNNNGC	4 cut(s)	229, 490, 503, 1658
HpyF3I	CTNAG	5 cut(s)	33, 113, 426, 665, 1737
HpySE526I	ACGT	4 cut(s)	716, 1101, 1121, 1456
Hsp92II	CATG	8 cut(s)	161, 392, 476, 497, 623, 1247, 1300, 1341
HspAI	GCGC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	6 cut(s)	408, 570, 697, 1632, 1640, 1693
LmnI	GCTCC	2 cut(s)	78, 457
Lsp1109I	GCAGC	2 cut(s)	1211, 1388
LweI	GCATC	3 cut(s)	430, 1054, 1578
MabI	ACCWGGT	1 cut(s)	132
MaeI	CTAG	3 cut(s)	1320, 1536, 1592
MaeII	ACGT	4 cut(s)	716, 1101, 1121, 1456
MaeIII	GTNAC	7 cut(s)	808, 911, 1012, 1117, 1352, 1358, 1621
MalI	GATC	6 cut(s)	410, 572, 699, 1634, 1642, 1695
MboI	GATC	6 cut(s)	408, 570, 697, 1632, 1640, 1693
MboII	GAAGA	5 cut(s)	101, 181, 321, 968, 1022
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	2 cut(s)	1632, 1640
MlyI	GAGTC	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	8 cut(s)	11, 315, 480, 525, 923, 965, 1137, 1436
MslI	CAYNNNNRTG	2 cut(s)	162, 492
MspA1I	CMGCKG	1 cut(s)	1202
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	2 cut(s)	579, 1394
MspR9I	CCNGG	7 cut(s)	134, 181, 580, 953, 1005, 1256, 1364
MunI	CAATTG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	6 cut(s)	134, 181, 953, 1005, 1256, 1364
MwoI	GCNNNNNNNGC	4 cut(s)	229, 490, 503, 1658
NciI	CCSGG	1 cut(s)	580
NcoI	CCATGG	1 cut(s)	157
NdeI	CATATG	2 cut(s)	1546, 1698
NdeII	GATC	6 cut(s)	408, 570, 697, 1632, 1640, 1693
NlaIII	CATG	8 cut(s)	161, 392, 476, 497, 623, 1247, 1300, 1341
NmeAIII	GCCGAG	1 cut(s)	98
NmuCI	GTSAC	3 cut(s)	808, 1117, 1621
NsbI	TGCGCA	1 cut(s)	55
NspI	RCATGY	3 cut(s)	392, 497, 1300
PaeI	GCATGC	2 cut(s)	497, 1300
PceI	AGGCCT	1 cut(s)	1713
PciI	ACATGT	1 cut(s)	388
PctI	GAATGC	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	4 cut(s)	203, 250, 469, 616
PflFI	GACNNNGTC	1 cut(s)	1115
PflMI	CCANNNNNTGG	1 cut(s)	1261
PfoI	TCCNGGA	1 cut(s)	1003
PkrI	GCNGC	4 cut(s)	7, 1201, 1378, 1749
PleI	GAGTC	1 cut(s)	25
PmaCI	CACGTG	1 cut(s)	1122
PmlI	CACGTG	1 cut(s)	1122
PpsI	GAGTC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	1122
PscI	ACATGT	1 cut(s)	388
PshBI	ATTAAT	3 cut(s)	923, 1137, 1436
PsiI	TTATAA	2 cut(s)	1020, 1385
Psp1406I	AACGTT	1 cut(s)	1101
Psp6I	CCWGG	6 cut(s)	132, 179, 951, 1003, 1254, 1362
PspCI	CACGTG	1 cut(s)	1122
PspGI	CCWGG	6 cut(s)	132, 179, 951, 1003, 1254, 1362
PspPI	GGNCC	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	1261
PsuI	RGATCY	2 cut(s)	1632, 1640
PsyI	GACNNNGTC	1 cut(s)	1115
PvuII	CAGCTG	1 cut(s)	1202
RsaI	GTAC	5 cut(s)	138, 502, 605, 1427, 1604
RsaNI	GTAC	5 cut(s)	137, 501, 604, 1426, 1603
RseI	CAYNNNNRTG	2 cut(s)	162, 492
SaqAI	TTAA	8 cut(s)	11, 315, 480, 525, 923, 965, 1137, 1436
SatI	GCNGC	4 cut(s)	6, 1200, 1377, 1748
Sau3AI	GATC	6 cut(s)	408, 570, 697, 1632, 1640, 1693
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	7 cut(s)	134, 181, 580, 953, 1005, 1256, 1364
SexAI	ACCWGGT	1 cut(s)	132
SfaNI	GCATC	3 cut(s)	430, 1054, 1578
SfcI	CTRYAG	1 cut(s)	1636
SinI	GGWCC	1 cut(s)	360
SmiMI	CAYNNNNRTG	2 cut(s)	162, 492
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SpeI	ACTAGT	1 cut(s)	1535
SphI	GCATGC	2 cut(s)	497, 1300
SseBI	AGGCCT	1 cut(s)	1713
SsiI	CCGC	1 cut(s)	1475
SspMI	CTAG	3 cut(s)	1320, 1536, 1592
StuI	AGGCCT	1 cut(s)	1713
StyD4I	CCNGG	7 cut(s)	132, 179, 578, 951, 1003, 1254, 1362
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	6 cut(s)	47, 374, 999, 1274, 1358, 1523
TaiI	ACGT	4 cut(s)	719, 1104, 1124, 1459
TaqI	TCGA	1 cut(s)	201
TatI	WGTACW	4 cut(s)	500, 603, 1425, 1602
TfiI	GAWTC	4 cut(s)	203, 250, 469, 616
Tru1I	TTAA	8 cut(s)	11, 315, 480, 525, 923, 965, 1137, 1436
Tru9I	TTAA	8 cut(s)	11, 315, 480, 525, 923, 965, 1137, 1436
TscAI	CASTG	5 cut(s)	52, 80, 1279, 1528, 1654
TseFI	GTSAC	3 cut(s)	808, 1117, 1621
TseI	GCWGC	4 cut(s)	5, 1199, 1376, 1747
Tsp45I	GTSAC	3 cut(s)	808, 1117, 1621
TspGWI	ACGGA	2 cut(s)	324, 866
TspRI	CASTG	5 cut(s)	52, 80, 1279, 1528, 1654
Tth111I	GACNNNGTC	1 cut(s)	1115
Van91I	CCANNNNNTGG	1 cut(s)	1261
Vha464I	CTTAAG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	360
VspI	ATTAAT	3 cut(s)	923, 1137, 1436
XapI	RAATTY	3 cut(s)	382, 677, 1311
XceI	RCATGY	3 cut(s)	392, 497, 1300
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	3 cut(s)	1320, 1536, 1592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.