Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009044

Physical Location & Seq

Genomic Coordinates Reverse (-)

17772163 .. 17777515

Gene Structure 5353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0190400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1878 bp

ATGAAGTTCATGAAACTTGGATCCAAGCCTGATTTCTTTCAGACAGAGGGGGATAATATTAGGTATGTGGCAACTGAGCTGGGGACTGATGTTGCTATTAATGTTGGAGATGTCAAGTTTTATTTGCACAAGTTCCCACTTTTGTCCAAGAGCGCACGCCTGCAGAAACTGGTGGCAACAACAAATGATGACAACAGTGACGAAATCCACATCCATGATATTCCGGGTGGACCTGCTGCTTTTGAAATATGTGCCAAGTTCTGTTATGGTATGACAGTGACTCTCAATGCATACAATGTGGTTGCAACTCGATGCGCAGCAGAGTACCTTGAGATGTATGAGACTGTTGAGAAAGGAAACCTTGTCTACAAGGTTGAAGTTTTCCTAAGCTCTAGCATCTTCCGAAGCTGGAAAGACTCGATAATTGTTCTTCAGACAACAAGGTCTCTTCTTCCCTGGGCTGAGGAACTTAAGGTGGTTAGCCATTGCCTAGACTCCATAGCATCCAAGGCTACCATTGATACTTCCAAGGTGGAATGGTCATATTCGTATAACCATAAAAAGCTGCCATCTGAGAATGGGAATGATCCACTCTGGAATGGTGTAGGAAAACAGCAGATGGTTCCAAAAGACTGGTGGGTAGAAGACCTCTGTGGGCTTCAACTTGATTTATACAAGCGGGTGATAACAATAATCAAGACCAAAGGGAAAATCTCTGCTGATGTAATTGGGGAAGCCTTAAATGCATACACTGTAAGAAGGTTATCAGGTATTAGTAAGGGTATCATTCAGGGAGGTGATGTCGTAAAGAATAGATCATTGGTGGAGACTGTCATCCACCTGCTTCCTACAGGGAGTGTCCCCTGCAGTTTCTTACTTAAGTTGTTAAAAGCAGCCATCTTGTTAGAATGTGGAGAAATGGAAAAAAGTGAATTGATGAGGAGAATTAGCCAGCAGCTTGAGGAGGCCACAGTTTCTGATCTTTTAATTCGAGCCCCAGCTGAGGAAGAAATGATATATGATGTTGATATAGTGCACAGGCTAATTGAAGAGTTCGTGACACGTGATCAAAGTGCTCAGACAGATCCTTCAATGGAAACTGAATTCCAGGAGATCAAAACCCCCAGGTTCCTATCAGATACTTCAAAGGTGAAGGTGGCAAAGCTGGTTGATGGCTACCTTGCCGAAACTGGACGTGATCCCAAGTTACCGGTGTCAGAGTTTGTCAGTCTTGCTGAAATTGTATCAAGCTTCCCGCGATCATCTCATGATGGAGTTTACCGTGCCATTGACATGTTTCTAAAGGAACACCCGGGAATCAGCAAGAGTGAAAAGAAGAGAATATGCAAATTAATGGACTGTAGGAAGTTATCAGCAGCAGCCTGCACACATGCCGTGCAAAATGAGCGGCTGCCCCTGAGAGTCGTTGTGCAGGTCCTTTTCTTCGAACAGGCTAGGGCTTCAGTTGGTGGAAACAGTACACCTGATCTACATGGATCCATGAGAGCCTTACTCCCTGGTGGGTCTCATGGAAGCTCAAGATCCACTACAACCAACACAGAAGAGGACTGGGATGCTGTGCCAACAGCCGAGGAGATCAAGGCTTTAAAAGGGGAGATATCTACACTACGGTTAGATGATGGTAATGAGGGAGTTGGCAATGATAAGAATGATCATCATGGTGCTAAAAACCATTCTGAAAAAGTTGCTGCCAGCAAAATGAAAGGGCTACTGATGTCAAAGAAGATATTCTCTAAGCTCTGGTCAAACAAGGAAAGGAATGGTGAAAGCAGCTCGGATACATCGGAGAGTCCTAGTTCTATCAATGCTGAAGAAACAAAATCCCATTCCAGGAGTAGGAGGCGCTCATTATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

625

Amino Acids

69.49

Weight (kDa)

6.5

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	29 - 118	2.1e-07	BTB/POZ domain
NPH3	PF03000	211 - 462	2.5e-85	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39860 AT4G39860 AT4G39860 AT4G39860
fragaria_vesca	FvH4_1g20950 FvH4_1g20950
malus_domestica	MD01G1029000.v1.1 MD15G1324500.v1.1
prunus_persica	Prupe.6G186300_v2.0.a1
pyrus_communis	pycom01g05710 pycom15g28630
rosa_chinensis	RchiOBHm_Chr2g0114441
rosa_laevigata	RLG00000018101
rosa_multiflora	Rmu_co8512843.1_g000001 Rmu_sc0000431.1_g000033
rosa_roxburghii	Rroxscaffold_2G00130150
rosa_rugosa	Rorug02G0190400
rosa_samantha	Rh2AG247500 Rh2BG257400 Rh2CG251000 Rh2DG255500
rosa_wichuraiana	Rw2G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	849
AasI	GACNNNNNNGTC	1 cut(s)	442
Acc16I	TGCGCA	1 cut(s)	316
Acc36I	ACCTGC	3 cut(s)	241, 849, 1423
AccBSI	CCGCTC	1 cut(s)	1408
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	1 cut(s)	1258
AciI	CCGC	3 cut(s)	679, 1256, 1408
AclWI	GGATC	8 cut(s)	15, 28, 581, 1079, 1193, 1491, 1504, 1536
AcsI	RAATTY	1 cut(s)	1103
AcuI	CTGAAG	3 cut(s)	416, 1446, 1851
AcvI	CACGTG	1 cut(s)	1064
AfaI	GTAC	2 cut(s)	326, 1480
AfiI	CCNNNNNNNGG	3 cut(s)	1003, 1851, 1857
AflII	CTTAAG	2 cut(s)	470, 878
AflIII	ACRYGT	2 cut(s)	1061, 1293
AgeI	ACCGGT	1 cut(s)	1210
AgsI	TTSAA	6 cut(s)	245, 377, 662, 1049, 1092, 1146
AjiI	CACGTC	1 cut(s)	1196
AjnI	CCWGG	5 cut(s)	455, 1107, 1124, 1516, 1850
AjuI	GAANNNNNNNTTGG	4 cut(s)	17, 49, 803, 835
Alw21I	GWGCWC	2 cut(s)	1038, 1078
Alw26I	GTCTC	4 cut(s)	335, 450, 821, 1530
Alw44I	GTGCAC	1 cut(s)	1034
AlwI	GGATC	8 cut(s)	15, 28, 581, 1079, 1193, 1491, 1504, 1536
AlwNI	CAGNNNCTG	2 cut(s)	169, 977
Ama87I	CYCGRG	1 cut(s)	1312
AoxI	GGCC	1 cut(s)	966
ApaLI	GTGCAC	1 cut(s)	1034
ApoI	RAATTY	1 cut(s)	1103
AseI	ATTAAT	2 cut(s)	99, 1352
AsiGI	ACCGGT	1 cut(s)	1210
Asp700I	GAANNNNTTC	1 cut(s)	1748
AspLEI	GCGC	3 cut(s)	155, 317, 1866
AspS9I	GGNCC	2 cut(s)	230, 1435
AsuC2I	CCSGG	3 cut(s)	225, 1313, 1314
AsuHPI	GGTGA	4 cut(s)	694, 809, 1162, 1796
AsuII	TTCGAA	1 cut(s)	1446
AvaI	CYCGRG	1 cut(s)	1312
AvaII	GGWCC	2 cut(s)	230, 1435
BaeGI	GKGCMC	1 cut(s)	1038
BamHI	GGATCC	2 cut(s)	20, 1496
BanII	GRGCYC	1 cut(s)	997
BbrPI	CACGTG	1 cut(s)	1064
BbsI	GAAGAC	1 cut(s)	651
Bbv12I	GWGCWC	2 cut(s)	1038, 1078
BbvCI	CCTCAGC	2 cut(s)	462, 1002
BccI	CCATC	6 cut(s)	577, 613, 905, 1166, 1265, 1634
BceAI	ACGGC	1 cut(s)	1379
BciT130I	CCWGG	5 cut(s)	457, 1109, 1126, 1518, 1852
BciVI	GTATCC	1 cut(s)	1792
BclI	TGATCA	2 cut(s)	1066, 1672
BcnI	CCSGG	3 cut(s)	225, 1313, 1314
BcoDI	GTCTC	4 cut(s)	335, 450, 821, 1530
BfaI	CTAG	5 cut(s)	393, 491, 1455, 1815, 1876
BfmI	CTRYAG	4 cut(s)	161, 849, 865, 1360
BfoI	RGCGCY	1 cut(s)	1867
BfrI	CTTAAG	2 cut(s)	470, 878
BfuAI	ACCTGC	3 cut(s)	241, 849, 1423
BfuI	GTATCC	1 cut(s)	1792
Bme1390I	CCNGG	8 cut(s)	225, 457, 1109, 1126, 1313, 1314, 1518, 1852
Bme18I	GGWCC	2 cut(s)	230, 1435
BmeT110I	CYCGRG	1 cut(s)	1312
BmgBI	CACGTC	1 cut(s)	1196
BmgT120I	GGNCC	2 cut(s)	230, 1435
BmiI	GGNNCC	4 cut(s)	22, 624, 1130, 1498
BmrFI	CCNGG	8 cut(s)	225, 457, 1109, 1126, 1313, 1314, 1518, 1852
BmrI	ACTGGG	1 cut(s)	1579
BmsI	GCATC	4 cut(s)	302, 405, 512, 1564
BmuI	ACTGGG	1 cut(s)	1579
BpiI	GAAGAC	1 cut(s)	651
BplI	GAGNNNNNCTC	2 cut(s)	1497, 1529
Bpu10I	CCTNAGC	3 cut(s)	386, 462, 1002
Bpu14I	TTCGAA	1 cut(s)	1446
BpuEI	CTTGAG	3 cut(s)	350, 980, 1522
BpuMI	CCSGG	3 cut(s)	225, 1313, 1314
BsaAI	YACGTR	1 cut(s)	1064
BsaI	GGTCTC	2 cut(s)	450, 1530
BsaJI	CCNNGG	8 cut(s)	455, 456, 507, 528, 1124, 1312, 1516, 1590
BsaWI	WCCGGW	1 cut(s)	1210
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bsc4I	CCNNNNNNNGG	3 cut(s)	1003, 1851, 1857
Bse118I	RCCGGY	1 cut(s)	1210
Bse1I	ACTGG	4 cut(s)	174, 638, 1195, 1574
Bse3DI	GCAATG	2 cut(s)	484, 1666
BseBI	CCWGG	5 cut(s)	457, 1109, 1126, 1518, 1852
BseDI	CCNNGG	8 cut(s)	455, 456, 507, 528, 1124, 1312, 1516, 1590
BseGI	GGATG	4 cut(s)	210, 503, 834, 1579
BseLI	CCNNNNNNNGG	3 cut(s)	1003, 1851, 1857
BseMI	GCAATG	2 cut(s)	484, 1666
BseMII	CTCAG	6 cut(s)	66, 453, 564, 993, 1091, 1409
BseNI	ACTGG	4 cut(s)	174, 638, 1195, 1574
BseRI	GAGGAG	3 cut(s)	955, 977, 1607
BseSI	GKGCMC	1 cut(s)	1038
BseYI	CCCAGC	2 cut(s)	79, 997
BsgI	GTGCAG	2 cut(s)	1369, 1451
Bsh1236I	CGCG	1 cut(s)	1258
BshFI	GGCC	1 cut(s)	968
BshTI	ACCGGT	1 cut(s)	1210
BsiHKAI	GWGCWC	2 cut(s)	1038, 1078
BsiHKCI	CYCGRG	1 cut(s)	1312
BsiSI	CCGG	3 cut(s)	224, 1211, 1313
BslFI	GGGAC	2 cut(s)	97, 845
BslI	CCNNNNNNNGG	3 cut(s)	1003, 1851, 1857
BsmAI	GTCTC	4 cut(s)	335, 450, 821, 1530
BsmFI	GGGAC	2 cut(s)	97, 845
BsnI	GGCC	1 cut(s)	968
Bso31I	GGTCTC	2 cut(s)	450, 1530
BsoBI	CYCGRG	1 cut(s)	1312
Bsp119I	TTCGAA	1 cut(s)	1446
Bsp1286I	GDGCHC	3 cut(s)	997, 1038, 1078
BspACI	CCGC	3 cut(s)	679, 1256, 1408
BspANI	GGCC	1 cut(s)	968
BspCNI	CTCAG	6 cut(s)	67, 454, 565, 994, 1090, 1410
BspFNI	CGCG	1 cut(s)	1258
BspHI	TCATGA	2 cut(s)	9, 1267
BspLI	GGNNCC	4 cut(s)	22, 624, 1130, 1498
BspMAI	CTGCAG	2 cut(s)	165, 869
BspMI	ACCTGC	3 cut(s)	241, 849, 1423
BspPI	GGATC	8 cut(s)	15, 28, 581, 1079, 1193, 1491, 1504, 1536
BspT104I	TTCGAA	1 cut(s)	1446
BspTI	CTTAAG	2 cut(s)	470, 878
BspTNI	GGTCTC	2 cut(s)	450, 1530
BsrBI	CCGCTC	1 cut(s)	1408
BsrDI	GCAATG	2 cut(s)	484, 1666
BsrFI	RCCGGY	1 cut(s)	1210
BsrI	ACTGG	4 cut(s)	174, 638, 1195, 1574
BssAI	RCCGGY	1 cut(s)	1210
BssECI	CCNNGG	8 cut(s)	455, 456, 507, 528, 1124, 1312, 1516, 1590
BssT1I	CCWWGG	2 cut(s)	507, 528
Bst2UI	CCWGG	5 cut(s)	457, 1109, 1126, 1518, 1852
Bst6I	CTCTTC	4 cut(s)	453, 1044, 1331, 1557
BstAFI	CTTAAG	2 cut(s)	470, 878
BstBAI	YACGTR	1 cut(s)	1064
BstBI	TTCGAA	1 cut(s)	1446
BstC8I	GCNNGC	5 cut(s)	157, 161, 953, 1384, 1714
BstDEI	CTNAG	8 cut(s)	75, 386, 462, 573, 1002, 1077, 1418, 1755
BstF5I	GGATG	4 cut(s)	210, 503, 834, 1579
BstFNI	CGCG	1 cut(s)	1258
BstH2I	RGCGCY	1 cut(s)	1867
BstHHI	GCGC	3 cut(s)	155, 317, 1866
BstMAI	GTCTC	4 cut(s)	335, 450, 821, 1530
BstMWI	GCNNNNNNNGC	3 cut(s)	509, 743, 1405
BstNI	CCWGG	5 cut(s)	457, 1109, 1126, 1518, 1852
BstNSI	RCATGY	2 cut(s)	1297, 1394
BstSCI	CCNGG	8 cut(s)	223, 455, 1107, 1124, 1311, 1312, 1516, 1850
BstSFI	CTRYAG	4 cut(s)	161, 849, 865, 1360
BstSLI	GKGCMC	1 cut(s)	1038
BstUI	CGCG	1 cut(s)	1258
BstV2I	GAAGAC	1 cut(s)	651
BstX2I	RGATCY	4 cut(s)	20, 1084, 1496, 1541
BstXI	CCANNNNNNTGG	1 cut(s)	633
BstYI	RGATCY	4 cut(s)	20, 1084, 1496, 1541
BsuI	GTATCC	1 cut(s)	1792
BsuRI	GGCC	1 cut(s)	968
BtrI	CACGTC	1 cut(s)	1196
BtsCI	GGATG	4 cut(s)	210, 503, 834, 1579
BtsIMutI	CAGTG	3 cut(s)	202, 282, 750
BveI	ACCTGC	3 cut(s)	241, 849, 1423
Cac8I	GCNNGC	5 cut(s)	157, 161, 953, 1384, 1714
CaiI	CAGNNNCTG	2 cut(s)	169, 977
CciI	TCATGA	2 cut(s)	9, 1267
CfoI	GCGC	3 cut(s)	155, 317, 1866
Cfr10I	RCCGGY	1 cut(s)	1210
Cfr13I	GGNCC	2 cut(s)	230, 1435
Cfr9I	CCCGGG	1 cut(s)	1312
Csp6I	GTAC	2 cut(s)	325, 1479
CspAI	ACCGGT	1 cut(s)	1210
CviAII	CATG	9 cut(s)	10, 215, 1268, 1294, 1391, 1493, 1501, 1529, 1679
CviQI	GTAC	2 cut(s)	325, 1479
DdeI	CTNAG	8 cut(s)	75, 386, 462, 573, 1002, 1077, 1418, 1755
DraI	TTTAAA	1 cut(s)	1608
DrdI	GACNNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	442
Eam1104I	CTCTTC	4 cut(s)	453, 1044, 1331, 1557
EarI	CTCTTC	4 cut(s)	453, 1044, 1331, 1557
Eco130I	CCWWGG	2 cut(s)	507, 528
Eco24I	GRGCYC	1 cut(s)	997
Eco31I	GGTCTC	2 cut(s)	450, 1530
Eco32I	GATATC	1 cut(s)	1620
Eco47I	GGWCC	2 cut(s)	230, 1435
Eco57I	CTGAAG	3 cut(s)	416, 1446, 1851
Eco72I	CACGTG	1 cut(s)	1064
Eco88I	CYCGRG	1 cut(s)	1312
EcoO109I	RGGNCCY	1 cut(s)	1435
EcoRI	GAATTC	1 cut(s)	1103
EcoRII	CCWGG	5 cut(s)	455, 1107, 1124, 1516, 1850
EcoRV	GATATC	1 cut(s)	1620
EcoT14I	CCWWGG	2 cut(s)	507, 528
EcoT22I	ATGCAT	2 cut(s)	292, 748
EcoT38I	GRGCYC	1 cut(s)	997
ErhI	CCWWGG	2 cut(s)	507, 528
FaeI	CATG	9 cut(s)	13, 218, 1271, 1297, 1394, 1496, 1504, 1532, 1682
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	2 cut(s)	97, 845
FatI	CATG	9 cut(s)	9, 214, 1267, 1293, 1390, 1492, 1500, 1528, 1678
FauI	CCCGC	2 cut(s)	672, 1263
FbaI	TGATCA	2 cut(s)	1066, 1672
FblI	GTMKAC	1 cut(s)	366
FokI	GGATG	4 cut(s)	197, 490, 821, 1586
FriOI	GRGCYC	1 cut(s)	997
FspBI	CTAG	5 cut(s)	393, 491, 1455, 1815, 1876
FspI	TGCGCA	1 cut(s)	316
GlaI	GCGC	3 cut(s)	154, 316, 1865
GsaI	CCCAGC	2 cut(s)	83, 1001
HaeII	RGCGCY	1 cut(s)	1867
HaeIII	GGCC	1 cut(s)	968
HapII	CCGG	3 cut(s)	224, 1211, 1313
HhaI	GCGC	3 cut(s)	155, 317, 1866
Hin1II	CATG	9 cut(s)	13, 218, 1271, 1297, 1394, 1496, 1504, 1532, 1682
Hin6I	GCGC	3 cut(s)	153, 315, 1864
HinP1I	GCGC	3 cut(s)	153, 315, 1864
HindIII	AAGCTT	1 cut(s)	1249
HinfI	GANTC	6 cut(s)	280, 416, 494, 1317, 1422, 1810
HpaII	CCGG	3 cut(s)	224, 1211, 1313
HphI	GGTGA	4 cut(s)	694, 809, 1162, 1796
Hpy166II	GTNNAC	5 cut(s)	230, 367, 1036, 1279, 1481
Hpy188III	TCNNGA	6 cut(s)	10, 595, 697, 1057, 1268, 1539
Hpy8I	GTNNAC	5 cut(s)	230, 367, 1036, 1279, 1481
HpyAV	CCTTC	3 cut(s)	753, 1098, 1147
HpyCH4IV	ACGT	2 cut(s)	1063, 1195
HpyF10VI	GCNNNNNNNGC	3 cut(s)	509, 743, 1405
HpyF3I	CTNAG	8 cut(s)	75, 386, 462, 573, 1002, 1077, 1418, 1755
HpySE526I	ACGT	2 cut(s)	1063, 1195
Hsp92II	CATG	9 cut(s)	13, 218, 1271, 1297, 1394, 1496, 1504, 1532, 1682
HspAI	GCGC	3 cut(s)	153, 315, 1864
Ksp22I	TGATCA	2 cut(s)	1066, 1672
LweI	GCATC	4 cut(s)	302, 405, 512, 1564
MaeI	CTAG	5 cut(s)	393, 491, 1455, 1815, 1876
MaeII	ACGT	2 cut(s)	1063, 1195
MaeIII	GTNAC	4 cut(s)	197, 277, 1057, 1206
MbiI	CCGCTC	1 cut(s)	1408
MflI	RGATCY	4 cut(s)	20, 1084, 1496, 1541
MhlI	GDGCHC	3 cut(s)	997, 1038, 1078
MluCI	AATT	9 cut(s)	423, 726, 932, 945, 987, 1044, 1103, 1239, 1349
MlyI	GAGTC	5 cut(s)	274, 410, 488, 1431, 1819
MmeI	TCCRAC	1 cut(s)	85
Mph1103I	ATGCAT	2 cut(s)	292, 748
MroXI	GAANNNNTTC	1 cut(s)	1748
MseI	TTAA	8 cut(s)	99, 471, 740, 879, 887, 986, 1352, 1607
MslI	CAYNNNNRTG	3 cut(s)	213, 1292, 1680
MspA1I	CMGCKG	1 cut(s)	1001
MspCI	CTTAAG	2 cut(s)	470, 878
MspI	CCGG	3 cut(s)	224, 1211, 1313
MspR9I	CCNGG	8 cut(s)	225, 457, 1109, 1126, 1313, 1314, 1518, 1852
MvaI	CCWGG	5 cut(s)	457, 1109, 1126, 1518, 1852
MvnI	CGCG	1 cut(s)	1258
MwoI	GCNNNNNNNGC	3 cut(s)	509, 743, 1405
NciI	CCSGG	3 cut(s)	225, 1313, 1314
NlaIII	CATG	9 cut(s)	13, 218, 1271, 1297, 1394, 1496, 1504, 1532, 1682
NlaIV	GGNNCC	4 cut(s)	22, 624, 1130, 1498
NmeAIII	GCCGAG	1 cut(s)	1615
NmuCI	GTSAC	3 cut(s)	197, 277, 1057
NsbI	TGCGCA	1 cut(s)	316
NsiI	ATGCAT	2 cut(s)	292, 748
NspI	RCATGY	2 cut(s)	1297, 1394
NspV	TTCGAA	1 cut(s)	1446
PagI	TCATGA	2 cut(s)	9, 1267
PaqCI	CACCTGC	1 cut(s)	849
PasI	CCCWGGG	1 cut(s)	456
PciI	ACATGT	1 cut(s)	1293
PdmI	GAANNNNTTC	1 cut(s)	1748
PfeI	GAWTC	1 cut(s)	1317
PfoI	TCCNGGA	2 cut(s)	1107, 1850
PinAI	ACCGGT	1 cut(s)	1210
PleI	GAGTC	5 cut(s)	274, 410, 488, 1430, 1818
PmaCI	CACGTG	1 cut(s)	1064
PmlI	CACGTG	1 cut(s)	1064
PpsI	GAGTC	5 cut(s)	274, 410, 488, 1430, 1818
Ppu21I	YACGTR	1 cut(s)	1064
PpuMI	RGGWCCY	1 cut(s)	1435
PscI	ACATGT	1 cut(s)	1293
PshBI	ATTAAT	2 cut(s)	99, 1352
Psp5II	RGGWCCY	1 cut(s)	1435
Psp6I	CCWGG	5 cut(s)	455, 1107, 1124, 1516, 1850
PspCI	CACGTG	1 cut(s)	1064
PspFI	CCCAGC	2 cut(s)	79, 997
PspGI	CCWGG	5 cut(s)	455, 1107, 1124, 1516, 1850
PspN4I	GGNNCC	4 cut(s)	22, 624, 1130, 1498
PspPI	GGNCC	2 cut(s)	230, 1435
PspPPI	RGGWCCY	1 cut(s)	1435
PstI	CTGCAG	2 cut(s)	165, 869
PstNI	CAGNNNCTG	2 cut(s)	169, 977
PsuI	RGATCY	4 cut(s)	20, 1084, 1496, 1541
PvuII	CAGCTG	1 cut(s)	1001
RsaI	GTAC	2 cut(s)	326, 1480
RsaNI	GTAC	2 cut(s)	325, 1479
RseI	CAYNNNNRTG	3 cut(s)	213, 1292, 1680
SaqAI	TTAA	8 cut(s)	99, 471, 740, 879, 887, 986, 1352, 1607
Sau96I	GGNCC	2 cut(s)	230, 1435
SchI	GAGTC	5 cut(s)	274, 410, 488, 1431, 1819
ScrFI	CCNGG	8 cut(s)	225, 457, 1109, 1126, 1313, 1314, 1518, 1852
SduI	GDGCHC	3 cut(s)	997, 1038, 1078
SfaNI	GCATC	4 cut(s)	302, 405, 512, 1564
SfcI	CTRYAG	4 cut(s)	161, 849, 865, 1360
SfuI	TTCGAA	1 cut(s)	1446
SinI	GGWCC	2 cut(s)	230, 1435
SmaI	CCCGGG	1 cut(s)	1314
SmiMI	CAYNNNNRTG	3 cut(s)	213, 1292, 1680
SmlI	CTYRAG	5 cut(s)	329, 470, 878, 959, 1537
SmoI	CTYRAG	5 cut(s)	329, 470, 878, 959, 1537
Sse9I	AATT	9 cut(s)	423, 726, 932, 945, 987, 1044, 1103, 1239, 1349
SsiI	CCGC	3 cut(s)	679, 1256, 1408
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	5 cut(s)	393, 491, 1455, 1815, 1876
StyD4I	CCNGG	8 cut(s)	223, 455, 1107, 1124, 1311, 1312, 1516, 1850
StyI	CCWWGG	2 cut(s)	507, 528
TaiI	ACGT	2 cut(s)	1066, 1198
TaqI	TCGA	4 cut(s)	310, 419, 991, 1446
TasI	AATT	9 cut(s)	423, 726, 932, 945, 987, 1044, 1103, 1239, 1349
TatI	WGTACW	1 cut(s)	1478
TauI	GCSGC	1 cut(s)	1411
TfiI	GAWTC	1 cut(s)	1317
Tru1I	TTAA	8 cut(s)	99, 471, 740, 879, 887, 986, 1352, 1607
Tru9I	TTAA	8 cut(s)	99, 471, 740, 879, 887, 986, 1352, 1607
TscAI	CASTG	3 cut(s)	202, 282, 757
TseFI	GTSAC	3 cut(s)	197, 277, 1057
Tsp45I	GTSAC	3 cut(s)	197, 277, 1057
TspDTI	ATGAA	3 cut(s)	17, 26, 1736
TspMI	CCCGGG	1 cut(s)	1312
TspRI	CASTG	3 cut(s)	202, 282, 757
Vha464I	CTTAAG	2 cut(s)	470, 878
VneI	GTGCAC	1 cut(s)	1034
VpaK11BI	GGWCC	2 cut(s)	230, 1435
VspI	ATTAAT	2 cut(s)	99, 1352
XapI	RAATTY	1 cut(s)	1103
XceI	RCATGY	2 cut(s)	1297, 1394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	633
XmaI	CCCGGG	1 cut(s)	1312
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	1748
XspI	CTAG	5 cut(s)	393, 491, 1455, 1815, 1876
Zsp2I	ATGCAT	2 cut(s)	292, 748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.