FvH4_1g20950

Protein of unknown function (DUF4057)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009044
Physical Location & Seq
Reverse (-)
13052725 .. 13057315
4591 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20950.t2

Sequence Viewer

Length: 879 bp
ATGGCCACTCCAGTGAGAAAGCCCCGCCGCGACACCGCTGACATGCTTACGTGGCAAGAGGTCCCCCGCTCTGACTCTCCCGCCACCGCCCCCTCCAAACATCGCTCTCACCAGCCGTCGGATGGGATCAGCAAGGTGCTCCACGGCGGTCAGATCACCGAGGAAGAAGCTCAGAGCCTGAACAAAAAGAAGCCCTGTTCCGGTTACAAGCTGAAGGAGATATCCGGCAGCGGCATATTCGCTGGCGAAGGCAATGCGGAGCCGGAACAACCAGGTCGGGTTTACCAGCAGGCGGTCAACGGGATCAGTCAAATCTCGTTCAGCGTTGACGAGCACGTGACCCCGAAGAAGCCGACGAGTATTCCGGAGGTGGCCAAGCAGAGGGAGTTGTGTGGGACTTTGCAATCGGAATTGGATTCCAAGACTCAGAAGGGGATTTCAAAAGCGAAGAACAAGGAGCTTAGTGGAAATGACATCTTTGGCCCTCCCCCAGAGATTGTTCCCCGATCGGTTAATGCTGTTGGTACCCATGACTATAATAAGCAGGGTAAAGATTCCGGGGAGCCAGCGCCCAGAAATCTTCGAACTTCTGTCAAAGTTTCCAATCCTGCTGGTGGTCAGAGTAAAATCTTGTTCACTGAGGACCCTGTTGTCAAGACTTCCAAGAAAATTCATAACCAGAAGTTTGCAGAGCTGACAGGCAATGACATATTTAAGGGAGATGTTTCTCCGGGATCTGCTGAAAAGCCCCTGAGCACAGCTAAGCTGAGAGAAATGAGTGGCAGCAACATTTTTGCTGATGGAAAGGCGGCATCAAGAGACTATCTCGGTGGTGTTCGCAAGCCCCCTGGCGGCGAGAGCAGCATATCATTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

293

Amino Acids

31.26

Weight (kDa)

9.31

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4057 PF13266 2 - 203 2e-85 Protein of unknown function (DUF4057)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 650
Acc65I GGTACC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 524
AccBSI CCGCTC 1 cut(s) 69
AccII CGCG 1 cut(s) 30
AccIII TCCGGA 1 cut(s) 364
AclWI GGATC 3 cut(s) 134, 311, 742
AcoI YGGCCR 2 cut(s) 3, 372
AcsI RAATTY 1 cut(s) 669
AcuI CTGAAG 1 cut(s) 233
AcvI CACGTG 1 cut(s) 337
AfaI GTAC 1 cut(s) 526
AfiI CCNNNNNNNGG 7 cut(s) 118, 122, 200, 292, 381, 614, 851
AgsI TTSAA 1 cut(s) 441
AjnI CCWGG 2 cut(s) 271, 847
AleI CACNNNNGTG 1 cut(s) 11
AluBI AGCT 6 cut(s) 170, 211, 460, 694, 761, 766
AluI AGCT 6 cut(s) 170, 211, 460, 694, 761, 766
Alw21I GWGCWC 3 cut(s) 141, 336, 758
Alw26I GTCTC 1 cut(s) 813
AlwI GGATC 3 cut(s) 134, 311, 742
AlwNI CAGNNNCTG 1 cut(s) 178
Aor13HI TCCGGA 1 cut(s) 364
AoxI GGCC 3 cut(s) 3, 372, 481
ApeKI GCWGC 3 cut(s) 228, 783, 861
ApoI RAATTY 1 cut(s) 669
Asp718I GGTACC 1 cut(s) 524
AspLEI GCGC 1 cut(s) 571
AspS9I GGNCC 3 cut(s) 61, 482, 643
AsuC2I CCSGG 2 cut(s) 559, 732
AsuHPI GGTGA 2 cut(s) 101, 148
AsuII TTCGAA 1 cut(s) 583
AvaII GGWCC 2 cut(s) 61, 643
BalI TGGCCA 2 cut(s) 5, 374
BanI GGYRCC 1 cut(s) 524
BbrPI CACGTG 1 cut(s) 337
Bbv12I GWGCWC 3 cut(s) 141, 336, 758
BbvI GCAGC 3 cut(s) 240, 795, 873
BccI CCATC 2 cut(s) 116, 794
BceAI ACGGC 2 cut(s) 100, 160
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 2 cut(s) 273, 849
BcnI CCSGG 2 cut(s) 559, 732
BcoDI GTCTC 1 cut(s) 813
BfoI RGCGCY 1 cut(s) 572
BisI GCNGC 7 cut(s) 28, 229, 232, 784, 810, 853, 862
BlpI GCTNAGC 1 cut(s) 762
BlsI GCNGC 7 cut(s) 29, 230, 233, 785, 811, 854, 863
Bme1390I CCNGG 4 cut(s) 273, 559, 732, 849
Bme18I GGWCC 2 cut(s) 61, 643
BmgT120I GGNCC 3 cut(s) 61, 482, 643
BmiI GGNNCC 5 cut(s) 63, 261, 526, 564, 645
BmrFI CCNGG 4 cut(s) 273, 559, 732, 849
BmsI GCATC 1 cut(s) 821
BplI GAGNNNNNCTC 2 cut(s) 810, 842
Bpu10I CCTNAGC 1 cut(s) 752
Bpu1102I GCTNAGC 1 cut(s) 762
Bpu14I TTCGAA 1 cut(s) 583
BpuMI CCSGG 2 cut(s) 559, 732
BsaAI YACGTR 2 cut(s) 51, 337
BsaJI CCNNGG 4 cut(s) 142, 159, 558, 847
BsaWI WCCGGW 2 cut(s) 200, 364
Bsc4I CCNNNNNNNGG 7 cut(s) 118, 122, 200, 292, 381, 614, 851
Bse1I ACTGG 1 cut(s) 11
Bse3DI GCAATG 2 cut(s) 259, 709
BseAI TCCGGA 1 cut(s) 364
BseBI CCWGG 2 cut(s) 273, 849
BseDI CCNNGG 4 cut(s) 142, 159, 558, 847
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 7 cut(s) 118, 122, 200, 292, 381, 614, 851
BseMI GCAATG 2 cut(s) 259, 709
BseMII CTCAG 5 cut(s) 185, 440, 630, 743, 758
BseNI ACTGG 1 cut(s) 11
BseXI GCAGC 3 cut(s) 240, 795, 873
Bsh1236I CGCG 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 509
BshFI GGCC 3 cut(s) 5, 374, 483
BshNI GGYRCC 1 cut(s) 524
BsiEI CGRYCG 1 cut(s) 509
BsiHKAI GWGCWC 3 cut(s) 141, 336, 758
BsiSI CCGG 6 cut(s) 201, 225, 263, 365, 558, 731
BslFI GGGAC 2 cut(s) 47, 409
BslI CCNNNNNNNGG 7 cut(s) 118, 122, 200, 292, 381, 614, 851
BsmAI GTCTC 1 cut(s) 813
BsmFI GGGAC 2 cut(s) 47, 409
BsnI GGCC 3 cut(s) 5, 374, 483
Bsp119I TTCGAA 1 cut(s) 583
Bsp1286I GDGCHC 3 cut(s) 141, 336, 758
Bsp13I TCCGGA 1 cut(s) 364
Bsp143I GATC 5 cut(s) 126, 153, 303, 506, 734
Bsp1720I GCTNAGC 1 cut(s) 762
BspANI GGCC 3 cut(s) 5, 374, 483
BspCNI CTCAG 5 cut(s) 184, 439, 631, 744, 759
BspEI TCCGGA 1 cut(s) 364
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 5 cut(s) 63, 261, 526, 564, 645
BspPI GGATC 3 cut(s) 134, 311, 742
BspT104I TTCGAA 1 cut(s) 583
BspT107I GGYRCC 1 cut(s) 524
BsrBI CCGCTC 1 cut(s) 69
BsrDI GCAATG 2 cut(s) 259, 709
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 4 cut(s) 142, 159, 558, 847
BssMI GATC 5 cut(s) 126, 153, 303, 506, 734
Bst2UI CCWGG 2 cut(s) 273, 849
BstBAI YACGTR 2 cut(s) 51, 337
BstBI TTCGAA 1 cut(s) 583
BstC8I GCNNGC 4 cut(s) 244, 291, 567, 842
BstDEI CTNAG 7 cut(s) 171, 426, 461, 639, 752, 762, 767
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 572
BstHHI GCGC 1 cut(s) 571
BstKTI GATC 5 cut(s) 129, 156, 306, 509, 737
BstMAI GTCTC 1 cut(s) 813
BstMBI GATC 5 cut(s) 126, 153, 303, 506, 734
BstMCI CGRYCG 1 cut(s) 509
BstMWI GCNNNNNNNGC 3 cut(s) 52, 858, 861
BstNI CCWGG 2 cut(s) 273, 849
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 4 cut(s) 271, 557, 730, 847
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 3 cut(s) 240, 795, 873
BstX2I RGATCY 1 cut(s) 734
BstYI RGATCY 1 cut(s) 734
BsuRI GGCC 3 cut(s) 5, 374, 483
BtgI CCRYGG 1 cut(s) 142
BtgZI GCGATG 1 cut(s) 86
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 18, 636
Cac8I GCNNGC 4 cut(s) 244, 291, 567, 842
CaiI CAGNNNCTG 1 cut(s) 178
CfoI GCGC 1 cut(s) 571
Cfr13I GGNCC 3 cut(s) 61, 482, 643
CsiI ACCWGGT 1 cut(s) 271
Csp6I GTAC 1 cut(s) 525
CviAII CATG 2 cut(s) 43, 530
CviQI GTAC 1 cut(s) 525
DdeI CTNAG 7 cut(s) 171, 426, 461, 639, 752, 762, 767
DpnI GATC 5 cut(s) 128, 155, 305, 508, 736
DpnII GATC 5 cut(s) 126, 153, 303, 506, 734
DrdI GACNNNNNNGTC 1 cut(s) 650
DseDI GACNNNNNNGTC 1 cut(s) 650
EaeI YGGCCR 2 cut(s) 3, 372
Eco32I GATATC 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 61, 643
Eco57I CTGAAG 1 cut(s) 233
Eco72I CACGTG 1 cut(s) 337
EcoO109I RGGNCCY 2 cut(s) 61, 643
EcoRII CCWGG 2 cut(s) 271, 847
EcoRV GATATC 1 cut(s) 222
FaeI CATG 2 cut(s) 46, 533
FaiI YATR 7 cut(s) 44, 236, 531, 537, 675, 710, 866
FaqI GGGAC 2 cut(s) 47, 409
FatI CATG 2 cut(s) 42, 529
FauI CCCGC 3 cut(s) 32, 74, 88
Fnu4HI GCNGC 7 cut(s) 28, 229, 232, 784, 810, 853, 862
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 7 cut(s) 28, 229, 232, 784, 810, 853, 862
GlaI GCGC 1 cut(s) 570
GluI GCNGC 7 cut(s) 28, 229, 232, 784, 810, 853, 862
HaeII RGCGCY 1 cut(s) 572
HaeIII GGCC 3 cut(s) 5, 374, 483
HapII CCGG 6 cut(s) 201, 225, 263, 365, 558, 731
HhaI GCGC 1 cut(s) 571
Hin1II CATG 2 cut(s) 46, 533
Hin6I GCGC 1 cut(s) 569
HinP1I GCGC 1 cut(s) 569
HincII GTYRAC 2 cut(s) 298, 328
HindII GTYRAC 2 cut(s) 298, 328
HinfI GANTC 4 cut(s) 74, 416, 424, 554
HpaII CCGG 6 cut(s) 201, 225, 263, 365, 558, 731
HphI GGTGA 2 cut(s) 101, 148
Hpy166II GTNNAC 4 cut(s) 283, 298, 328, 636
Hpy188I TCNGA 7 cut(s) 73, 121, 153, 174, 409, 429, 621
Hpy188III TCNNGA 3 cut(s) 365, 655, 816
Hpy8I GTNNAC 4 cut(s) 283, 298, 328, 636
Hpy99I CGWCG 2 cut(s) 121, 358
HpyAV CCTTC 3 cut(s) 208, 242, 424
HpyCH4IV ACGT 2 cut(s) 50, 336
HpyCH4V TGCA 2 cut(s) 403, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 858, 861
HpyF3I CTNAG 7 cut(s) 171, 426, 461, 639, 752, 762, 767
HpySE526I ACGT 2 cut(s) 50, 336
Hsp92II CATG 2 cut(s) 46, 533
HspAI GCGC 1 cut(s) 569
Kpn2I TCCGGA 1 cut(s) 364
KpnI GGTACC 1 cut(s) 528
Kzo9I GATC 5 cut(s) 126, 153, 303, 506, 734
LmnI GCTCC 4 cut(s) 144, 259, 457, 562
Lsp1109I GCAGC 3 cut(s) 240, 795, 873
LweI GCATC 1 cut(s) 821
MabI ACCWGGT 1 cut(s) 271
MaeII ACGT 2 cut(s) 50, 336
MaeIII GTNAC 2 cut(s) 203, 337
MalI GATC 5 cut(s) 128, 155, 305, 508, 736
MbiI CCGCTC 1 cut(s) 69
MboI GATC 5 cut(s) 126, 153, 303, 506, 734
MboII GAAGA 4 cut(s) 176, 358, 460, 572
MflI RGATCY 1 cut(s) 734
MhlI GDGCHC 3 cut(s) 141, 336, 758
MlsI TGGCCA 2 cut(s) 5, 374
MluCI AATT 2 cut(s) 410, 669
MluNI TGGCCA 2 cut(s) 5, 374
MlyI GAGTC 2 cut(s) 68, 418
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 7 cut(s) 52, 103, 154, 361, 375, 495, 634
Mox20I TGGCCA 2 cut(s) 5, 374
MroI TCCGGA 1 cut(s) 364
MscI TGGCCA 2 cut(s) 5, 374
MseI TTAA 3 cut(s) 513, 714, 877
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 2 cut(s) 5, 374
MspA1I CMGCKG 2 cut(s) 38, 231
MspI CCGG 6 cut(s) 201, 225, 263, 365, 558, 731
MspR9I CCNGG 4 cut(s) 273, 559, 732, 849
MvaI CCWGG 2 cut(s) 273, 849
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 52, 858, 861
NciI CCSGG 2 cut(s) 559, 732
NdeII GATC 5 cut(s) 126, 153, 303, 506, 734
NlaIII CATG 2 cut(s) 46, 533
NlaIV GGNNCC 5 cut(s) 63, 261, 526, 564, 645
NmuCI GTSAC 1 cut(s) 337
NspI RCATGY 1 cut(s) 46
NspV TTCGAA 1 cut(s) 583
OliI CACNNNNGTG 1 cut(s) 11
PfeI GAWTC 2 cut(s) 416, 554
PfoI TCCNGGA 1 cut(s) 730
PkrI GCNGC 7 cut(s) 29, 230, 233, 785, 811, 854, 863
Ple19I CGATCG 1 cut(s) 509
PleI GAGTC 2 cut(s) 68, 418
PmaCI CACGTG 1 cut(s) 337
PmlI CACGTG 1 cut(s) 337
PpsI GAGTC 2 cut(s) 68, 418
Ppu21I YACGTR 2 cut(s) 51, 337
PpuMI RGGWCCY 2 cut(s) 61, 643
Psp5II RGGWCCY 2 cut(s) 61, 643
Psp6I CCWGG 2 cut(s) 271, 847
PspCI CACGTG 1 cut(s) 337
PspGI CCWGG 2 cut(s) 271, 847
PspN4I GGNNCC 5 cut(s) 63, 261, 526, 564, 645
PspPI GGNCC 3 cut(s) 61, 482, 643
PspPPI RGGWCCY 2 cut(s) 61, 643
PstNI CAGNNNCTG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 734
PvuI CGATCG 1 cut(s) 509
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 3 cut(s) 513, 714, 877
SatI GCNGC 7 cut(s) 28, 229, 232, 784, 810, 853, 862
Sau3AI GATC 5 cut(s) 126, 153, 303, 506, 734
Sau96I GGNCC 3 cut(s) 61, 482, 643
SchI GAGTC 2 cut(s) 68, 418
ScrFI CCNGG 4 cut(s) 273, 559, 732, 849
SduI GDGCHC 3 cut(s) 141, 336, 758
SexAI ACCWGGT 1 cut(s) 271
SfaNI GCATC 1 cut(s) 821
SfuI TTCGAA 1 cut(s) 583
SinI GGWCC 2 cut(s) 61, 643
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 2 cut(s) 410, 669
StyD4I CCNGG 4 cut(s) 271, 557, 730, 847
TaiI ACGT 2 cut(s) 53, 339
TaqI TCGA 1 cut(s) 583
TasI AATT 2 cut(s) 410, 669
TauI GCSGC 4 cut(s) 30, 234, 812, 855
TfiI GAWTC 2 cut(s) 416, 554
Tru1I TTAA 3 cut(s) 513, 714, 877
Tru9I TTAA 3 cut(s) 513, 714, 877
TscAI CASTG 2 cut(s) 18, 643
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 3 cut(s) 228, 783, 861
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 1 cut(s) 662
TspRI CASTG 2 cut(s) 18, 643
VpaK11BI GGWCC 2 cut(s) 61, 643
XapI RAATTY 1 cut(s) 669
XceI RCATGY 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.