AT4G39860

Protein of unknown function (DUF4057)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009044
Physical Location & Seq
Forward (+)
18498202 .. 18501682
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39860.4

Sequence Viewer

Length: 900 bp
ATGGAGAGAAACACGCCGGTGAGAAACCCTCACACTTCCACCGCCGATCTGCTTTCTTGGTCGGAAACTCCTCCTCCTCCTCACCACTCAACCCCTTCCGCCGCTCGTTCTCACCAGCCGTCCGATGGAATCAGCAAGATTCTAGGCGGTGGTCAGATCACAGATGAAGAAGCCCAGTCGCTTAATAAGCTAAAGAATTGTTCAGGGTACAAGTTAAAAGAGATGACTGGTAGTGGCATATTTACTGATAAGGGAAAAGTTGGATCTGAATCCGATGCTACTACTGATCCAAAGACTGGACTCCGTTACTATCAGCAGACTCTGAATGGAATGAGTCAGATATCTTTCAGTGCTGACGGTAATGTTTCCCCGAAGAAACCAACCACTTTAACCGAGGTTGCAAAGCAAAGAGAGCTGAGCGGGAACTTGCTAACCGAGGCGGATTTAAAGAGCAACAAGCAGATATCAAGTGCTAAGATTGAAGAGATCAGCGGTCATGACATCTTTGCACCTCCATCTGAGATTCAGCCTCGATCTTTGGTTGCTGCACAGCAAGAAGCTAGAGGTAACAGAGACATGGGAGAGCCTGCACCAAGGAACTTACGCACTTCTGTTAAAGTTTCCAACCCTGCAGGAGGACAAAGCAACATACTATTCAGTGAAGAACCTGTTGTGAAGACATCAAAGAAGATACATAACCAGAAGTTTCAGGAACTCACAGGCAACGGCATTTTCAAAGGCGATGAATCACCTGGTAGTGCGGATAAGCAGTTAAGCTCAGCTAAACTCCGTGAAATGAGCGGAAACAACATTTTCGCAGACGGAAAGTCAGAGTCCCGAGACTACTTTGGCGGCGTGAGGAAACCTCCCGGAGGTGAAAGCAGCATTTCATTGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

299

Amino Acids

32.08

Weight (kDa)

8.48

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4057 PF13266 3 - 297 4.4e-152 Protein of unknown function (DUF4057)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 296
AccBSI CCGCTC 3 cut(s) 104, 420, 801
AclWI GGATC 2 cut(s) 271, 281
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 4 cut(s) 125, 296, 635, 872
AgsI TTSAA 2 cut(s) 482, 736
AhdI GACNNNNNGTC 1 cut(s) 826
AjnI CCWGG 1 cut(s) 751
AleI CACNNNNGTG 1 cut(s) 17
AluBI AGCT 5 cut(s) 190, 415, 560, 777, 782
AluI AGCT 5 cut(s) 190, 415, 560, 777, 782
Alw26I GTCTC 2 cut(s) 567, 834
AlwI GGATC 2 cut(s) 271, 281
AlwNI CAGNNNCTG 1 cut(s) 322
Ama87I CYCGRG 1 cut(s) 837
ApeKI GCWGC 2 cut(s) 545, 882
AsuC2I CCSGG 1 cut(s) 870
AsuHPI GGTGA 5 cut(s) 31, 74, 104, 741, 887
AvaI CYCGRG 1 cut(s) 837
BbsI GAAGAC 1 cut(s) 683
BbvI GCAGC 2 cut(s) 532, 894
BccI CCATC 2 cut(s) 119, 523
BceAI ACGGC 2 cut(s) 103, 742
BciT130I CCWGG 1 cut(s) 753
BcnI CCSGG 1 cut(s) 870
BcoDI GTCTC 2 cut(s) 567, 834
BfaI CTAG 2 cut(s) 143, 561
BfmI CTRYAG 1 cut(s) 630
BisI GCNGC 4 cut(s) 102, 546, 853, 883
BlpI GCTNAGC 2 cut(s) 416, 778
BlsI GCNGC 4 cut(s) 103, 547, 854, 884
Bme1390I CCNGG 2 cut(s) 753, 870
BmeRI GACNNNNNGTC 1 cut(s) 826
BmeT110I CYCGRG 1 cut(s) 837
BmrFI CCNGG 2 cut(s) 753, 870
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 683
BplI GAGNNNNNCTC 4 cut(s) 13, 45, 850, 882
Bpu1102I GCTNAGC 2 cut(s) 416, 778
BpuMI CCSGG 1 cut(s) 870
BsaBI GATNNNNATC 1 cut(s) 268
BsaJI CCNNGG 3 cut(s) 393, 435, 593
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 296, 635, 872
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 3 cut(s) 175, 232, 301
Bse8I GATNNNNATC 1 cut(s) 268
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 3 cut(s) 393, 435, 593
BseJI GATNNNNATC 1 cut(s) 268
BseLI CCNNNNNNNGG 4 cut(s) 125, 296, 635, 872
BseMII CTCAG 3 cut(s) 407, 510, 792
BseNI ACTGG 3 cut(s) 175, 232, 301
BseRI GAGGAG 4 cut(s) 60, 63, 66, 69
BseXI GCAGC 2 cut(s) 532, 894
BsgI GTGCAG 2 cut(s) 531, 573
BsiHKCI CYCGRG 1 cut(s) 837
BsiSI CCGG 2 cut(s) 17, 870
BslFI GGGAC 1 cut(s) 820
BslI CCNNNNNNNGG 4 cut(s) 125, 296, 635, 872
BsmAI GTCTC 2 cut(s) 567, 834
BsmFI GGGAC 1 cut(s) 820
BsoBI CYCGRG 1 cut(s) 837
Bsp143I GATC 6 cut(s) 46, 156, 263, 286, 486, 533
Bsp1720I GCTNAGC 2 cut(s) 416, 778
BspCNI CTCAG 3 cut(s) 408, 511, 791
BspHI TCATGA 1 cut(s) 496
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 2 cut(s) 271, 281
BsrBI CCGCTC 3 cut(s) 104, 420, 801
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 3 cut(s) 175, 232, 301
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 393, 435, 593
BssMI GATC 6 cut(s) 46, 156, 263, 286, 486, 533
BssT1I CCWWGG 1 cut(s) 593
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 4 cut(s) 416, 474, 519, 778
BstENI CCTNNNNNAGG 2 cut(s) 633, 870
BstKTI GATC 6 cut(s) 49, 159, 266, 289, 489, 536
BstMAI GTCTC 2 cut(s) 567, 834
BstMBI GATC 6 cut(s) 46, 156, 263, 286, 486, 533
BstMWI GCNNNNNNNGC 2 cut(s) 187, 412
BstNI CCWGG 1 cut(s) 753
BstSCI CCNGG 2 cut(s) 751, 868
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 2 cut(s) 532, 894
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BtgZI GCGATG 1 cut(s) 756
BtsIMutI CAGTG 2 cut(s) 355, 664
Cac8I GCNNGC 1 cut(s) 588
CaiI CAGNNNCTG 1 cut(s) 322
CciI TCATGA 1 cut(s) 496
Cfr10I RCCGGY 1 cut(s) 16
CsiI ACCWGGT 1 cut(s) 751
Csp6I GTAC 1 cut(s) 208
CviAII CATG 2 cut(s) 497, 577
CviJI RGCY 9 cut(s) 118, 173, 190, 415, 529, 560, 586, 777, 782
CviKI_1 RGCY 9 cut(s) 118, 173, 190, 415, 529, 560, 586, 777, 782
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 4 cut(s) 416, 474, 519, 778
DpnI GATC 6 cut(s) 48, 158, 265, 288, 488, 535
DpnII GATC 6 cut(s) 46, 156, 263, 286, 486, 533
DraI TTTAAA 1 cut(s) 447
DriI GACNNNNNGTC 1 cut(s) 826
Eam1104I CTCTTC 1 cut(s) 477
Eam1105I GACNNNNNGTC 1 cut(s) 826
EarI CTCTTC 1 cut(s) 477
EciI GGCGGA 2 cut(s) 88, 455
Eco130I CCWWGG 1 cut(s) 593
Eco32I GATATC 2 cut(s) 342, 465
Eco88I CYCGRG 1 cut(s) 837
EcoNI CCTNNNNNAGG 2 cut(s) 633, 870
EcoRII CCWGG 1 cut(s) 751
EcoRV GATATC 2 cut(s) 342, 465
EcoT14I CCWWGG 1 cut(s) 593
ErhI CCWWGG 1 cut(s) 593
FaeI CATG 2 cut(s) 500, 580
FaiI YATR 5 cut(s) 239, 498, 578, 650, 696
FaqI GGGAC 1 cut(s) 820
FatI CATG 2 cut(s) 496, 576
FauI CCCGC 1 cut(s) 413
Fnu4HI GCNGC 4 cut(s) 102, 546, 853, 883
Fsp4HI GCNGC 4 cut(s) 102, 546, 853, 883
FspBI CTAG 2 cut(s) 143, 561
GluI GCNGC 4 cut(s) 102, 546, 853, 883
HapII CCGG 2 cut(s) 17, 870
Hin1II CATG 2 cut(s) 500, 580
HinfI GANTC 9 cut(s) 129, 139, 269, 300, 319, 334, 523, 746, 833
HpaII CCGG 2 cut(s) 17, 870
HphI GGTGA 5 cut(s) 31, 74, 104, 741, 887
Hpy188I TCNGA 9 cut(s) 64, 124, 156, 268, 274, 324, 339, 520, 832
Hpy188III TCNNGA 3 cut(s) 497, 710, 837
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4V TGCA 5 cut(s) 401, 509, 548, 590, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 412
HpyF3I CTNAG 4 cut(s) 416, 474, 519, 778
Hsp92II CATG 2 cut(s) 500, 580
Kzo9I GATC 6 cut(s) 46, 156, 263, 286, 486, 533
Lsp1109I GCAGC 2 cut(s) 532, 894
LweI GCATC 1 cut(s) 265
MabI ACCWGGT 1 cut(s) 751
MaeI CTAG 2 cut(s) 143, 561
MaeIII GTNAC 2 cut(s) 305, 566
MalI GATC 6 cut(s) 48, 158, 265, 288, 488, 535
MbiI CCGCTC 3 cut(s) 104, 420, 801
MboI GATC 6 cut(s) 46, 156, 263, 286, 486, 533
MboII GAAGA 6 cut(s) 179, 385, 494, 674, 688, 700
MflI RGATCY 1 cut(s) 263
MluCI AATT 1 cut(s) 196
MlyI GAGTC 4 cut(s) 294, 313, 343, 842
MmeI TCCRAC 3 cut(s) 42, 241, 648
MseI TTAA 6 cut(s) 183, 215, 389, 446, 615, 773
MslI CAYNNNNRTG 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 492
MspI CCGG 2 cut(s) 17, 870
MspR9I CCNGG 2 cut(s) 753, 870
MvaI CCWGG 1 cut(s) 753
MwoI GCNNNNNNNGC 2 cut(s) 187, 412
NciI CCSGG 1 cut(s) 870
NdeII GATC 6 cut(s) 46, 156, 263, 286, 486, 533
NlaIII CATG 2 cut(s) 500, 580
OliI CACNNNNGTG 1 cut(s) 17
PagI TCATGA 1 cut(s) 496
PfeI GAWTC 5 cut(s) 129, 139, 269, 523, 746
PflMI CCANNNNNTGG 1 cut(s) 296
PfoI TCCNGGA 1 cut(s) 868
PkrI GCNGC 4 cut(s) 103, 547, 854, 884
PleI GAGTC 4 cut(s) 294, 313, 342, 841
PpsI GAGTC 4 cut(s) 294, 313, 342, 841
Psp6I CCWGG 1 cut(s) 751
PspGI CCWGG 1 cut(s) 751
PstI CTGCAG 1 cut(s) 634
PstNI CAGNNNCTG 1 cut(s) 322
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 6 cut(s) 183, 215, 389, 446, 615, 773
SatI GCNGC 4 cut(s) 102, 546, 853, 883
Sau3AI GATC 6 cut(s) 46, 156, 263, 286, 486, 533
SbfI CCTGCAGG 1 cut(s) 634
SchI GAGTC 4 cut(s) 294, 313, 343, 842
ScrFI CCNGG 2 cut(s) 753, 870
SdaI CCTGCAGG 1 cut(s) 634
SexAI ACCWGGT 1 cut(s) 751
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 630
SgrAI CRCCGGYG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 17
Sse8387I CCTGCAGG 1 cut(s) 634
Sse9I AATT 1 cut(s) 196
SspMI CTAG 2 cut(s) 143, 561
StyD4I CCNGG 2 cut(s) 751, 868
StyI CCWWGG 1 cut(s) 593
TaaI ACNGT 1 cut(s) 359
TaqI TCGA 1 cut(s) 532
TasI AATT 1 cut(s) 196
TauI GCSGC 2 cut(s) 104, 855
TfiI GAWTC 5 cut(s) 129, 139, 269, 523, 746
Tru1I TTAA 6 cut(s) 183, 215, 389, 446, 615, 773
Tru9I TTAA 6 cut(s) 183, 215, 389, 446, 615, 773
TscAI CASTG 2 cut(s) 355, 664
TseI GCWGC 2 cut(s) 545, 882
TspDTI ATGAA 3 cut(s) 180, 759, 879
TspGWI ACGGA 3 cut(s) 293, 779, 837
TspRI CASTG 2 cut(s) 355, 664
Van91I CCANNNNNTGG 1 cut(s) 296
XagI CCTNNNNNAGG 2 cut(s) 633, 870
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XspI CTAG 2 cut(s) 143, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.