Rw2G019240

Protein of unknown function (DUF4057)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0009044
Physical Location & Seq
Reverse (-)
25238190 .. 25240141
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G019240.1

Sequence Viewer

Length: 876 bp
ATGGCCACACCAGTGAGAAAGCCTCGCCGCGACACCCCCGACATGCTGACGTGGCAAGAGGTGCCCCGCTCCGACTCTCCCGCCACCGCCTCCTCCGCTCACCGCTCTCACCAGCCGTCGGATGGGATCAGCAAGGTGCTCCACGGCGGTCAGATCACCGAGGAAGAAGCTCAGAGCCTGAACAAAAAGAAGCCTTGCTCCGGGTACAAAATGAAGGAGATTTCCGGAAGCGGGATATTCGCGGCTGGAGAAGGCAATGCGGAGCCGGAGCCGGGTCGGGTTTACCAGCAGGCGGTGAAAGGGATCAGTCAAATCTCGTTCAGCGTTGACGAGCACCTGAGCCCGAAGAAGCCGACGAGTGTTCCGGAGGTGGCGAAGCAGAAGGAGCTGAGTGGGACTTTGCAGTCGGAATTGGATTCCAAGACTCAGAAGGGGATTTCAAATGCCAAGACCAAGGAGCTTAGTGGAAATGACATCTTTGGCCCTCCCCCGGAGATTGTTCCCCGATCGGTCAATGCTGTTCACACCCACGAGTATAAGCAGAGTAAAGATTCCGGGGAGCCCGCGCCCAGAAATCTTCGCACCTCTGTCAAAGTTTCCAATCCGGCTGGAGGTCAGAGTAAAATCTTGTTCACTGAGGACCCTGTTGTCAAGACTTCCAAGAAAATTCATAACCAGAAGTTTGCAGAGCTGACAGGCAATGACATATTTAAGGGAGATGTTTCTCCGGGATCTGCTGAAAAGCCACTAAGCACGGCTAAGCTGAGAGAAATGAGTGGCAGCAACATCTTTGCTGATGGAAAGGCGGCATCAAGAGACTATCTAGGTGGTGTTCGCAAGCCCCCTGGTGGCGAGAGCAGCATATCATTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

291

Amino Acids

31.12

Weight (kDa)

9.28

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4057 PF13266 2 - 289 3.5e-142 Protein of unknown function (DUF4057)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 403, 647
AccB1I GGYRCC 1 cut(s) 61
AccBSI CCGCTC 3 cut(s) 69, 98, 105
AccII CGCG 3 cut(s) 30, 242, 566
AccIII TCCGGA 2 cut(s) 224, 364
AclWI GGATC 3 cut(s) 134, 311, 739
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 666
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 9 cut(s) 118, 122, 200, 231, 272, 292, 490, 611, 848
AgsI TTSAA 1 cut(s) 441
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 1 cut(s) 844
AleI CACNNNNGTG 1 cut(s) 11
AluBI AGCT 5 cut(s) 170, 388, 460, 691, 763
AluI AGCT 5 cut(s) 170, 388, 460, 691, 763
Alw21I GWGCWC 2 cut(s) 141, 336
Alw26I GTCTC 1 cut(s) 810
AlwI GGATC 3 cut(s) 134, 311, 739
AlwNI CAGNNNCTG 1 cut(s) 178
Aor13HI TCCGGA 2 cut(s) 224, 364
AoxI GGCC 2 cut(s) 3, 481
ApeKI GCWGC 2 cut(s) 780, 858
ApoI RAATTY 1 cut(s) 666
AspLEI GCGC 1 cut(s) 568
AspS9I GGNCC 2 cut(s) 482, 640
AsuC2I CCSGG 5 cut(s) 202, 273, 491, 556, 729
AsuHPI GGTGA 4 cut(s) 92, 101, 148, 307
AvaII GGWCC 1 cut(s) 640
BaeGI GKGCMC 1 cut(s) 66
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 2 cut(s) 344, 564
BauI CACGAG 1 cut(s) 530
Bbv12I GWGCWC 2 cut(s) 141, 336
BbvI GCAGC 2 cut(s) 792, 870
BccI CCATC 2 cut(s) 116, 791
BceAI ACGGC 3 cut(s) 100, 160, 771
BciT130I CCWGG 1 cut(s) 846
BcnI CCSGG 5 cut(s) 202, 273, 491, 556, 729
BcoDI GTCTC 1 cut(s) 810
BfaI CTAG 1 cut(s) 824
BisI GCNGC 5 cut(s) 28, 243, 781, 807, 859
BlpI GCTNAGC 1 cut(s) 759
BlsI GCNGC 5 cut(s) 29, 244, 782, 808, 860
Bme1390I CCNGG 6 cut(s) 202, 273, 491, 556, 729, 846
Bme18I GGWCC 1 cut(s) 640
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 482, 640
BmiI GGNNCC 5 cut(s) 63, 264, 270, 561, 642
BmrFI CCNGG 6 cut(s) 202, 273, 491, 556, 729, 846
BmsI GCATC 1 cut(s) 818
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpmI CTGGAG 2 cut(s) 267, 630
Bpu10I CCTNAGC 1 cut(s) 338
Bpu1102I GCTNAGC 1 cut(s) 759
BpuMI CCSGG 5 cut(s) 202, 273, 491, 556, 729
BsaJI CCNNGG 6 cut(s) 142, 159, 453, 489, 555, 844
BsaWI WCCGGW 2 cut(s) 224, 364
Bsc4I CCNNNNNNNGG 9 cut(s) 118, 122, 200, 231, 272, 292, 490, 611, 848
Bse1I ACTGG 1 cut(s) 11
Bse3DI GCAATG 2 cut(s) 262, 706
BseAI TCCGGA 2 cut(s) 224, 364
BseBI CCWGG 1 cut(s) 846
BseDI CCNNGG 6 cut(s) 142, 159, 453, 489, 555, 844
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 9 cut(s) 118, 122, 200, 231, 272, 292, 490, 611, 848
BseMI GCAATG 2 cut(s) 262, 706
BseMII CTCAG 6 cut(s) 185, 329, 380, 440, 627, 755
BseNI ACTGG 1 cut(s) 11
BseRI GAGGAG 1 cut(s) 82
BseSI GKGCMC 1 cut(s) 66
BseXI GCAGC 2 cut(s) 792, 870
Bsh1236I CGCG 3 cut(s) 30, 242, 566
Bsh1285I CGRYCG 1 cut(s) 509
BshFI GGCC 2 cut(s) 5, 483
BshNI GGYRCC 1 cut(s) 61
BsiEI CGRYCG 1 cut(s) 509
BsiHKAI GWGCWC 2 cut(s) 141, 336
BsiSI CCGG 9 cut(s) 201, 225, 266, 272, 365, 491, 555, 605, 728
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 9 cut(s) 118, 122, 200, 231, 272, 292, 490, 611, 848
BsmAI GTCTC 1 cut(s) 810
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 2 cut(s) 5, 483
Bsp1286I GDGCHC 5 cut(s) 66, 141, 336, 344, 564
Bsp13I TCCGGA 2 cut(s) 224, 364
Bsp143I GATC 5 cut(s) 126, 153, 303, 506, 731
Bsp1720I GCTNAGC 1 cut(s) 759
BspANI GGCC 2 cut(s) 5, 483
BspCNI CTCAG 6 cut(s) 184, 330, 381, 439, 628, 756
BspEI TCCGGA 2 cut(s) 224, 364
BspFNI CGCG 3 cut(s) 30, 242, 566
BspLI GGNNCC 5 cut(s) 63, 264, 270, 561, 642
BspPI GGATC 3 cut(s) 134, 311, 739
BspT107I GGYRCC 1 cut(s) 61
BsrBI CCGCTC 3 cut(s) 69, 98, 105
BsrDI GCAATG 2 cut(s) 262, 706
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 6 cut(s) 142, 159, 453, 489, 555, 844
BssMI GATC 5 cut(s) 126, 153, 303, 506, 731
BssSI CACGAG 1 cut(s) 530
BssT1I CCWWGG 1 cut(s) 453
Bst2BI CACGAG 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 846
BstAPI GCANNNNNTGC 1 cut(s) 61
BstC8I GCNNGC 3 cut(s) 291, 564, 839
BstDEI CTNAG 9 cut(s) 171, 338, 389, 426, 461, 636, 749, 759, 764
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 3 cut(s) 30, 242, 566
BstHHI GCGC 1 cut(s) 568
BstKTI GATC 5 cut(s) 129, 156, 306, 509, 734
BstMAI GTCTC 1 cut(s) 810
BstMBI GATC 5 cut(s) 126, 153, 303, 506, 731
BstMCI CGRYCG 1 cut(s) 509
BstMWI GCNNNNNNNGC 5 cut(s) 52, 61, 95, 385, 858
BstNI CCWGG 1 cut(s) 846
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 6 cut(s) 200, 271, 489, 554, 727, 844
BstSLI GKGCMC 1 cut(s) 66
BstUI CGCG 3 cut(s) 30, 242, 566
BstV1I GCAGC 2 cut(s) 792, 870
BstX2I RGATCY 1 cut(s) 731
BstYI RGATCY 1 cut(s) 731
BsuRI GGCC 2 cut(s) 5, 483
BtgI CCRYGG 1 cut(s) 142
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 18, 633
Cac8I GCNNGC 3 cut(s) 291, 564, 839
CaiI CAGNNNCTG 1 cut(s) 178
CfoI GCGC 1 cut(s) 568
Cfr13I GGNCC 2 cut(s) 482, 640
Csp6I GTAC 1 cut(s) 205
CviAII CATG 1 cut(s) 43
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 9 cut(s) 171, 338, 389, 426, 461, 636, 749, 759, 764
DpnI GATC 5 cut(s) 128, 155, 305, 508, 733
DpnII GATC 5 cut(s) 126, 153, 303, 506, 731
DrdI GACNNNNNNGTC 2 cut(s) 403, 647
DseDI GACNNNNNNGTC 2 cut(s) 403, 647
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 2 cut(s) 344, 564
Eco47I GGWCC 1 cut(s) 640
EcoO109I RGGNCCY 1 cut(s) 640
EcoRII CCWGG 1 cut(s) 844
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 2 cut(s) 344, 564
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 1 cut(s) 46
FaiI YATR 5 cut(s) 44, 537, 672, 707, 863
FaqI GGGAC 1 cut(s) 409
FatI CATG 1 cut(s) 42
FauI CCCGC 4 cut(s) 74, 88, 224, 571
Fnu4HI GCNGC 5 cut(s) 28, 243, 781, 807, 859
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 2 cut(s) 344, 564
Fsp4HI GCNGC 5 cut(s) 28, 243, 781, 807, 859
FspBI CTAG 1 cut(s) 824
GlaI GCGC 1 cut(s) 567
GluI GCNGC 5 cut(s) 28, 243, 781, 807, 859
GsuI CTGGAG 2 cut(s) 267, 630
HaeIII GGCC 2 cut(s) 5, 483
HapII CCGG 9 cut(s) 201, 225, 266, 272, 365, 491, 555, 605, 728
HhaI GCGC 1 cut(s) 568
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 1 cut(s) 566
HinP1I GCGC 1 cut(s) 566
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 4 cut(s) 74, 416, 424, 551
HpaII CCGG 9 cut(s) 201, 225, 266, 272, 365, 491, 555, 605, 728
HphI GGTGA 4 cut(s) 92, 101, 148, 307
Hpy166II GTNNAC 4 cut(s) 283, 328, 523, 633
Hpy188I TCNGA 7 cut(s) 73, 121, 153, 174, 409, 429, 618
Hpy188III TCNNGA 4 cut(s) 225, 365, 652, 813
Hpy8I GTNNAC 4 cut(s) 283, 328, 523, 633
Hpy99I CGWCG 2 cut(s) 121, 358
HpyAV CCTTC 4 cut(s) 208, 245, 376, 424
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 403, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 52, 61, 95, 385, 858
HpyF3I CTNAG 9 cut(s) 171, 338, 389, 426, 461, 636, 749, 759, 764
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 1 cut(s) 566
Kpn2I TCCGGA 2 cut(s) 224, 364
Kzo9I GATC 5 cut(s) 126, 153, 303, 506, 731
LmnI GCTCC 8 cut(s) 74, 144, 203, 262, 268, 385, 457, 559
Lsp1109I GCAGC 2 cut(s) 792, 870
LweI GCATC 1 cut(s) 818
MaeI CTAG 1 cut(s) 824
MaeII ACGT 1 cut(s) 50
MalI GATC 5 cut(s) 128, 155, 305, 508, 733
MbiI CCGCTC 3 cut(s) 69, 98, 105
MboI GATC 5 cut(s) 126, 153, 303, 506, 731
MboII GAAGA 3 cut(s) 176, 358, 569
MflI RGATCY 1 cut(s) 731
MhlI GDGCHC 5 cut(s) 66, 141, 336, 344, 564
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 410, 666
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 68, 418
MmeI TCCRAC 3 cut(s) 96, 99, 387
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 2 cut(s) 224, 364
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 711, 874
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 9 cut(s) 201, 225, 266, 272, 365, 491, 555, 605, 728
MspR9I CCNGG 6 cut(s) 202, 273, 491, 556, 729, 846
MvaI CCWGG 1 cut(s) 846
MvnI CGCG 3 cut(s) 30, 242, 566
MwoI GCNNNNNNNGC 5 cut(s) 52, 61, 95, 385, 858
NciI CCSGG 5 cut(s) 202, 273, 491, 556, 729
NdeII GATC 5 cut(s) 126, 153, 303, 506, 731
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 5 cut(s) 63, 264, 270, 561, 642
NspI RCATGY 1 cut(s) 46
OliI CACNNNNGTG 1 cut(s) 11
PfeI GAWTC 2 cut(s) 416, 551
PfoI TCCNGGA 1 cut(s) 727
PkrI GCNGC 5 cut(s) 29, 244, 782, 808, 860
Ple19I CGATCG 1 cut(s) 509
PleI GAGTC 2 cut(s) 68, 418
PpsI GAGTC 2 cut(s) 68, 418
PpuMI RGGWCCY 1 cut(s) 640
Psp5II RGGWCCY 1 cut(s) 640
Psp6I CCWGG 1 cut(s) 844
PspGI CCWGG 1 cut(s) 844
PspN4I GGNNCC 5 cut(s) 63, 264, 270, 561, 642
PspPI GGNCC 2 cut(s) 482, 640
PspPPI RGGWCCY 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 731
PvuI CGATCG 1 cut(s) 509
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 2 cut(s) 711, 874
SatI GCNGC 5 cut(s) 28, 243, 781, 807, 859
Sau3AI GATC 5 cut(s) 126, 153, 303, 506, 731
Sau96I GGNCC 2 cut(s) 482, 640
SchI GAGTC 2 cut(s) 68, 418
ScrFI CCNGG 6 cut(s) 202, 273, 491, 556, 729, 846
SduI GDGCHC 5 cut(s) 66, 141, 336, 344, 564
SfaNI GCATC 1 cut(s) 818
SinI GGWCC 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 2 cut(s) 410, 666
SspMI CTAG 1 cut(s) 824
StyD4I CCNGG 6 cut(s) 200, 271, 489, 554, 727, 844
StyI CCWWGG 1 cut(s) 453
TaiI ACGT 1 cut(s) 53
TaqII GACCGA 1 cut(s) 499
TasI AATT 2 cut(s) 410, 666
TauI GCSGC 3 cut(s) 30, 245, 809
TfiI GAWTC 2 cut(s) 416, 551
Tru1I TTAA 2 cut(s) 711, 874
Tru9I TTAA 2 cut(s) 711, 874
TscAI CASTG 2 cut(s) 18, 640
TseI GCWGC 2 cut(s) 780, 858
TspDTI ATGAA 2 cut(s) 227, 659
TspRI CASTG 2 cut(s) 18, 640
VpaK11BI GGWCC 1 cut(s) 640
XapI RAATTY 1 cut(s) 666
XceI RCATGY 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XspI CTAG 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.