Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000431.1

Orthogroup ID

OG0009044

Physical Location & Seq

Genomic Coordinates Reverse (-)

178025 .. 179612

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000431.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggccacaccagtgagaaagcctcgccgcgacaccgccgacatgctgacgtggcaagaggtcccccgctccgactctcccgccaccgcctcctccgctcaccgctctcaccagccgtcggatgggatcagcaaggtgctccacggcggtcagatcaccgaggaagaagctcagagcctgaacaaaaagaagccttgctccgggtacaaaatgaaggagatttccggaagcgggatattcgcggctggagaaggcaatgcggagccggagccgggtcgggtttaccagcaggcggtgaaagggatcagtcaaatctcgttcagcgttgacgagcacctgagcccgaagaagccgacgagtgttccggaggtggcgaagcagaaggagctgagtgggactttgcagtcggaattggattccaagacgcagaaggggatttcaaatgccaagaccaaggagcttagtggaaatgacatctttggccctcccccggagattgttccccgatcggtcaatgctgttcacacccacgagtataagcagagtaaagattccgcggagccggcgcccagaaatcttcgcacttctgtcaaagtttccaatccggctggaggtcagagtaaaatcttgttcactgaggaccctgttgtcaagacttccaagaaaattcataaccagaagtttgcagagctgacaggcaatgacatatttaagggagatgtttctccgggatctgctgaaaagccactaagcacggctaagctgagagaaatgagtggcagcaacatctttgctgatgggaaggcggcatcaagagactatctaggtggtgttcgcaagccccctggtggcgagagcagcatctcattggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4057

Protein Analysis

291

Amino Acids

31.11

Weight (kDa)

9.28

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39860 AT4G39860 AT4G39860 AT4G39860
fragaria_vesca	FvH4_1g20950 FvH4_1g20950
malus_domestica	MD01G1029000.v1.1 MD15G1324500.v1.1
prunus_persica	Prupe.6G186300_v2.0.a1
pyrus_communis	pycom01g05710 pycom15g28630
rosa_chinensis	RchiOBHm_Chr2g0114441
rosa_laevigata	RLG00000018101
rosa_multiflora	Rmu_co8512843.1_g000001 Rmu_sc0000431.1_g000033
rosa_roxburghii	Rroxscaffold_2G00130150
rosa_rugosa	Rorug02G0190400
rosa_samantha	Rh2AG247500 Rh2BG257400 Rh2CG251000 Rh2DG255500
rosa_wichuraiana	Rw2G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	403, 647
AccB1I	GGYRCC	1 cut(s)	565
AccBSI	CCGCTC	3 cut(s)	69, 98, 105
AccII	CGCG	3 cut(s)	30, 242, 557
AccIII	TCCGGA	2 cut(s)	224, 364
AclWI	GGATC	3 cut(s)	134, 311, 739
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	666
AcyI	GRCGYC	1 cut(s)	566
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	9 cut(s)	118, 122, 200, 231, 272, 292, 490, 611, 848
AgsI	TTSAA	1 cut(s)	441
AjiI	CACGTC	1 cut(s)	51
AjnI	CCWGG	1 cut(s)	844
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	5 cut(s)	170, 388, 460, 691, 763
AluI	AGCT	5 cut(s)	170, 388, 460, 691, 763
Alw21I	GWGCWC	2 cut(s)	141, 336
Alw26I	GTCTC	1 cut(s)	810
AlwI	GGATC	3 cut(s)	134, 311, 739
AlwNI	CAGNNNCTG	1 cut(s)	178
Aor13HI	TCCGGA	2 cut(s)	224, 364
AoxI	GGCC	2 cut(s)	3, 481
ApeKI	GCWGC	2 cut(s)	780, 858
ApoI	RAATTY	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	3 cut(s)	61, 482, 640
AsuC2I	CCSGG	4 cut(s)	202, 273, 491, 729
AsuHPI	GGTGA	4 cut(s)	92, 101, 148, 307
AvaII	GGWCC	2 cut(s)	61, 640
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	344
BauI	CACGAG	1 cut(s)	530
Bbv12I	GWGCWC	2 cut(s)	141, 336
BbvI	GCAGC	2 cut(s)	792, 870
BccI	CCATC	2 cut(s)	116, 791
BceAI	ACGGC	3 cut(s)	100, 160, 771
BciT130I	CCWGG	1 cut(s)	846
BcnI	CCSGG	4 cut(s)	202, 273, 491, 729
BcoDI	GTCTC	1 cut(s)	810
BfaI	CTAG	1 cut(s)	824
BfoI	RGCGCY	1 cut(s)	569
BisI	GCNGC	5 cut(s)	28, 243, 781, 807, 859
BlpI	GCTNAGC	1 cut(s)	759
BlsI	GCNGC	5 cut(s)	29, 244, 782, 808, 860
Bme1390I	CCNGG	5 cut(s)	202, 273, 491, 729, 846
Bme18I	GGWCC	2 cut(s)	61, 640
BmgBI	CACGTC	1 cut(s)	51
BmgT120I	GGNCC	3 cut(s)	61, 482, 640
BmiI	GGNNCC	6 cut(s)	63, 264, 270, 561, 567, 642
BmrFI	CCNGG	5 cut(s)	202, 273, 491, 729, 846
BmsI	GCATC	2 cut(s)	818, 870
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpmI	CTGGAG	2 cut(s)	267, 630
Bpu10I	CCTNAGC	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	759
BpuMI	CCSGG	4 cut(s)	202, 273, 491, 729
BsaHI	GRCGYC	1 cut(s)	566
BsaJI	CCNNGG	6 cut(s)	142, 159, 453, 489, 555, 844
BsaWI	WCCGGW	2 cut(s)	224, 364
Bsc4I	CCNNNNNNNGG	9 cut(s)	118, 122, 200, 231, 272, 292, 490, 611, 848
Bse118I	RCCGGY	1 cut(s)	562
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	2 cut(s)	262, 706
BseAI	TCCGGA	2 cut(s)	224, 364
BseBI	CCWGG	1 cut(s)	846
BseDI	CCNNGG	6 cut(s)	142, 159, 453, 489, 555, 844
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	9 cut(s)	118, 122, 200, 231, 272, 292, 490, 611, 848
BseMI	GCAATG	2 cut(s)	262, 706
BseMII	CTCAG	5 cut(s)	185, 329, 380, 627, 755
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	792, 870
Bsh1236I	CGCG	3 cut(s)	30, 242, 557
Bsh1285I	CGRYCG	1 cut(s)	509
BshFI	GGCC	2 cut(s)	5, 483
BshNI	GGYRCC	1 cut(s)	565
BsiEI	CGRYCG	1 cut(s)	509
BsiHKAI	GWGCWC	2 cut(s)	141, 336
BsiSI	CCGG	9 cut(s)	201, 225, 266, 272, 365, 491, 563, 605, 728
BslFI	GGGAC	2 cut(s)	47, 409
BslI	CCNNNNNNNGG	9 cut(s)	118, 122, 200, 231, 272, 292, 490, 611, 848
BsmAI	GTCTC	1 cut(s)	810
BsmFI	GGGAC	2 cut(s)	47, 409
BsnI	GGCC	2 cut(s)	5, 483
Bsp1286I	GDGCHC	3 cut(s)	141, 336, 344
Bsp13I	TCCGGA	2 cut(s)	224, 364
Bsp143I	GATC	5 cut(s)	126, 153, 303, 506, 731
Bsp1720I	GCTNAGC	1 cut(s)	759
BspANI	GGCC	2 cut(s)	5, 483
BspCNI	CTCAG	5 cut(s)	184, 330, 381, 628, 756
BspEI	TCCGGA	2 cut(s)	224, 364
BspFNI	CGCG	3 cut(s)	30, 242, 557
BspLI	GGNNCC	6 cut(s)	63, 264, 270, 561, 567, 642
BspPI	GGATC	3 cut(s)	134, 311, 739
BspT107I	GGYRCC	1 cut(s)	565
BsrBI	CCGCTC	3 cut(s)	69, 98, 105
BsrDI	GCAATG	2 cut(s)	262, 706
BsrFI	RCCGGY	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	6 cut(s)	142, 159, 453, 489, 555, 844
BssMI	GATC	5 cut(s)	126, 153, 303, 506, 731
BssNI	GRCGYC	1 cut(s)	566
BssSI	CACGAG	1 cut(s)	530
BssT1I	CCWWGG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	530
Bst2UI	CCWGG	1 cut(s)	846
BstACI	GRCGYC	1 cut(s)	566
BstC8I	GCNNGC	3 cut(s)	291, 564, 839
BstDEI	CTNAG	8 cut(s)	171, 338, 389, 461, 636, 749, 759, 764
BstDSI	CCRYGG	2 cut(s)	142, 555
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	3 cut(s)	30, 242, 557
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	5 cut(s)	129, 156, 306, 509, 734
BstMAI	GTCTC	1 cut(s)	810
BstMBI	GATC	5 cut(s)	126, 153, 303, 506, 731
BstMCI	CGRYCG	1 cut(s)	509
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 95, 385, 563, 858
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	5 cut(s)	200, 271, 489, 727, 844
BstUI	CGCG	3 cut(s)	30, 242, 557
BstV1I	GCAGC	2 cut(s)	792, 870
BstX2I	RGATCY	1 cut(s)	731
BstYI	RGATCY	1 cut(s)	731
BsuRI	GGCC	2 cut(s)	5, 483
BtgI	CCRYGG	2 cut(s)	142, 555
BtrI	CACGTC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	18, 633
Cac8I	GCNNGC	3 cut(s)	291, 564, 839
CaiI	CAGNNNCTG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	3 cut(s)	61, 482, 640
Cfr42I	CCGCGG	1 cut(s)	558
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	43
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	8 cut(s)	171, 338, 389, 461, 636, 749, 759, 764
DinI	GGCGCC	1 cut(s)	567
DpnI	GATC	5 cut(s)	128, 155, 305, 508, 733
DpnII	GATC	5 cut(s)	126, 153, 303, 506, 731
DrdI	GACNNNNNNGTC	2 cut(s)	403, 647
DseDI	GACNNNNNNGTC	2 cut(s)	403, 647
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	344
Eco47I	GGWCC	2 cut(s)	61, 640
EcoO109I	RGGNCCY	2 cut(s)	61, 640
EcoRII	CCWGG	1 cut(s)	844
EcoT14I	CCWWGG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	344
EgeI	GGCGCC	1 cut(s)	567
EheI	GGCGCC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	1 cut(s)	46
FaiI	YATR	4 cut(s)	44, 537, 672, 707
FaqI	GGGAC	2 cut(s)	47, 409
FatI	CATG	1 cut(s)	42
FauI	CCCGC	3 cut(s)	74, 88, 224
Fnu4HI	GCNGC	5 cut(s)	28, 243, 781, 807, 859
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	5 cut(s)	28, 243, 781, 807, 859
FspBI	CTAG	1 cut(s)	824
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	5 cut(s)	28, 243, 781, 807, 859
GsuI	CTGGAG	2 cut(s)	267, 630
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	2 cut(s)	5, 483
HapII	CCGG	9 cut(s)	201, 225, 266, 272, 365, 491, 563, 605, 728
HgaI	GACGC	1 cut(s)	433
HhaI	GCGC	1 cut(s)	568
Hin1I	GRCGYC	1 cut(s)	566
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	3 cut(s)	74, 416, 551
HpaII	CCGG	9 cut(s)	201, 225, 266, 272, 365, 491, 563, 605, 728
HphI	GGTGA	4 cut(s)	92, 101, 148, 307
Hpy166II	GTNNAC	4 cut(s)	283, 328, 523, 633
Hpy188I	TCNGA	6 cut(s)	73, 121, 153, 174, 409, 618
Hpy188III	TCNNGA	4 cut(s)	225, 365, 652, 813
Hpy8I	GTNNAC	4 cut(s)	283, 328, 523, 633
Hpy99I	CGWCG	2 cut(s)	121, 358
HpyAV	CCTTC	5 cut(s)	208, 245, 376, 424, 796
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	403, 686
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 95, 385, 563, 858
HpyF3I	CTNAG	8 cut(s)	171, 338, 389, 461, 636, 749, 759, 764
HpySE526I	ACGT	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	566
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	1 cut(s)	566
KasI	GGCGCC	1 cut(s)	565
Kpn2I	TCCGGA	2 cut(s)	224, 364
KroI	GCCGGC	1 cut(s)	562
KroNI	GCCGGC	1 cut(s)	564
KspI	CCGCGG	1 cut(s)	558
Kzo9I	GATC	5 cut(s)	126, 153, 303, 506, 731
LmnI	GCTCC	8 cut(s)	74, 144, 203, 262, 268, 385, 457, 559
Lsp1109I	GCAGC	2 cut(s)	792, 870
LweI	GCATC	2 cut(s)	818, 870
MaeI	CTAG	1 cut(s)	824
MaeII	ACGT	1 cut(s)	50
MalI	GATC	5 cut(s)	128, 155, 305, 508, 733
MbiI	CCGCTC	3 cut(s)	69, 98, 105
MboI	GATC	5 cut(s)	126, 153, 303, 506, 731
MboII	GAAGA	3 cut(s)	176, 358, 569
MflI	RGATCY	1 cut(s)	731
MhlI	GDGCHC	3 cut(s)	141, 336, 344
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	410, 666
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	566
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	3 cut(s)	96, 99, 387
MnlI	CCTC	9 cut(s)	33, 52, 100, 103, 154, 361, 495, 605, 631
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	2 cut(s)	224, 364
MroNI	GCCGGC	1 cut(s)	562
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	711, 874
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	9 cut(s)	201, 225, 266, 272, 365, 491, 563, 605, 728
MspR9I	CCNGG	5 cut(s)	202, 273, 491, 729, 846
MvaI	CCWGG	1 cut(s)	846
MvnI	CGCG	3 cut(s)	30, 242, 557
MwoI	GCNNNNNNNGC	5 cut(s)	52, 95, 385, 563, 858
NaeI	GCCGGC	1 cut(s)	564
NarI	GGCGCC	1 cut(s)	566
NciI	CCSGG	4 cut(s)	202, 273, 491, 729
NdeII	GATC	5 cut(s)	126, 153, 303, 506, 731
NgoMIV	GCCGGC	1 cut(s)	562
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	6 cut(s)	63, 264, 270, 561, 567, 642
NspI	RCATGY	1 cut(s)	46
OliI	CACNNNNGTG	1 cut(s)	11
PdiI	GCCGGC	1 cut(s)	564
PfeI	GAWTC	2 cut(s)	416, 551
PfoI	TCCNGGA	1 cut(s)	727
PkrI	GCNGC	5 cut(s)	29, 244, 782, 808, 860
Ple19I	CGATCG	1 cut(s)	509
PleI	GAGTC	1 cut(s)	68
PluTI	GGCGCC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	2 cut(s)	61, 640
Psp5II	RGGWCCY	2 cut(s)	61, 640
Psp6I	CCWGG	1 cut(s)	844
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	6 cut(s)	63, 264, 270, 561, 567, 642
PspPI	GGNCC	3 cut(s)	61, 482, 640
PspPPI	RGGWCCY	2 cut(s)	61, 640
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	731
PvuI	CGATCG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	11
SacII	CCGCGG	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	711, 874
SatI	GCNGC	5 cut(s)	28, 243, 781, 807, 859
Sau3AI	GATC	5 cut(s)	126, 153, 303, 506, 731
Sau96I	GGNCC	3 cut(s)	61, 482, 640
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	5 cut(s)	202, 273, 491, 729, 846
SduI	GDGCHC	3 cut(s)	141, 336, 344
SfaNI	GCATC	2 cut(s)	818, 870
SfoI	GGCGCC	1 cut(s)	567
Sfr303I	CCGCGG	1 cut(s)	558
SgrBI	CCGCGG	1 cut(s)	558
SinI	GGWCC	2 cut(s)	61, 640
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	410, 666
SspDI	GGCGCC	1 cut(s)	565
SspMI	CTAG	1 cut(s)	824
StyD4I	CCNGG	5 cut(s)	200, 271, 489, 727, 844
StyI	CCWWGG	1 cut(s)	453
TaiI	ACGT	1 cut(s)	53
TaqII	GACCGA	1 cut(s)	499
TasI	AATT	2 cut(s)	410, 666
TauI	GCSGC	3 cut(s)	30, 245, 809
TfiI	GAWTC	2 cut(s)	416, 551
Tru1I	TTAA	2 cut(s)	711, 874
Tru9I	TTAA	2 cut(s)	711, 874
TscAI	CASTG	2 cut(s)	18, 640
TseI	GCWGC	2 cut(s)	780, 858
TspDTI	ATGAA	2 cut(s)	227, 659
TspRI	CASTG	2 cut(s)	18, 640
VpaK11BI	GGWCC	2 cut(s)	61, 640
XapI	RAATTY	1 cut(s)	666
XceI	RCATGY	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XspI	CTAG	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.