Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009044

Physical Location & Seq

Genomic Coordinates Forward (+)

19486691 .. 19489009

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G186300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAGAGAAGCACACCAGTGAGAAAGCCTCGCAGAGACACTGCCGATATGCTGACGTGGAAAGAGGTCCCACAGTCCGACTCTCCCGCCACCGCCCCCTCCGGTCACCGCTCTCATCAGCCGTCAGATGGAATCAGCAAGGTGCTCCATGGAGGTCAGATCACTGATGAAGAAGCTCAGAGCCTCAACAAACAGAAGCCTTGTTCAGGCTATAAATTGAAGGAGATTACTGGTAATGGCATATTTGCTGCTGGTTCAGGCAACAATGCTGCACCAGAATCTAATGATGCTAGTAACAAAACAGGGCTTCGTATTTACCAGCAAGCACTCAATGGAGTTAGTCAAATATCATTCAGTGTTGATGAACATGTCACACCCAAGAAGCCGATCACCATTCCTGAGGTTGCAAAGCAGCGTGAATTGAGTGGGACATTGCAATCAGACTCGGATTCGAAGTCCAACAAGCATATATCAAATGCCAAGTCCAAGGAGCTCACTGGAAATGACATCTTTGGTCCTCCTCCTGAAACTGTGCCTCGATCTGTGGCTGCCGCGCACACCCTGGAAACTAGAGAAACCAGAGACATGGGAGAACCTGCTCCCCGAAATCTACGCACGTCTGTCAAAGTTTCAAATCCTGCTGGAGGTCAGAGTAATATCATGTTCAGTGAGGAACCTGTTGTCAAGACTTCAAGGAAAATACATAACCAGAAGTTTGCTGAGCTGACAGGAAATAATATATTTAAGGGAGATGTTCCTCCAGGATCTGCTGAAAAGCCCCTAAGCACGGCTAAGCTGAGAGAGATGAACGGTAGCGACATCTTTGCTGATGGAAAGGCATCATCCAGAGACTATCTGGGTGGTGTTCGCAAGCCCCCTGGTGGAGAGAGCAGCATTGCCTTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4057

Protein Analysis

303

Amino Acids

32.32

Weight (kDa)

9.16

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39860 AT4G39860 AT4G39860 AT4G39860
fragaria_vesca	FvH4_1g20950 FvH4_1g20950
malus_domestica	MD01G1029000.v1.1 MD15G1324500.v1.1
prunus_persica	Prupe.6G186300_v2.0.a1
pyrus_communis	pycom01g05710 pycom15g28630
rosa_chinensis	RchiOBHm_Chr2g0114441
rosa_laevigata	RLG00000018101
rosa_multiflora	Rmu_co8512843.1_g000001 Rmu_sc0000431.1_g000033
rosa_roxburghii	Rroxscaffold_2G00130150
rosa_rugosa	Rorug02G0190400
rosa_samantha	Rh2AG247500 Rh2BG257400 Rh2CG251000 Rh2DG255500
rosa_wichuraiana	Rw2G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	604
AccBSI	CCGCTC	1 cut(s)	111
AccII	CGCG	1 cut(s)	554
AciI	CCGC	4 cut(s)	87, 93, 109, 552
AclWI	GGATC	1 cut(s)	772
AfiI	CCNNNNNNNGG	5 cut(s)	128, 206, 644, 787, 881
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	3 cut(s)	220, 633, 693
AjiI	CACGTC	2 cut(s)	57, 618
AjnI	CCWGG	3 cut(s)	561, 760, 877
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	4 cut(s)	176, 493, 724, 796
AluI	AGCT	4 cut(s)	176, 493, 724, 796
Alw21I	GWGCWC	2 cut(s)	147, 495
Alw26I	GTCTC	3 cut(s)	30, 576, 843
AlwI	GGATC	1 cut(s)	772
AlwNI	CAGNNNCTG	1 cut(s)	767
ApeKI	GCWGC	5 cut(s)	248, 269, 412, 548, 891
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	67, 515
AsuHPI	GGTGA	2 cut(s)	98, 382
AsuII	TTCGAA	1 cut(s)	452
AvaII	GGWCC	2 cut(s)	67, 515
AxyI	CCTNAGG	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	495
Bbv12I	GWGCWC	2 cut(s)	147, 495
BbvI	GCAGC	5 cut(s)	235, 256, 424, 535, 903
BccI	CCATC	2 cut(s)	122, 824
BceAI	ACGGC	2 cut(s)	106, 804
BcgI	CGANNNNNNTGC	2 cut(s)	806, 840
BciT130I	CCWGG	3 cut(s)	563, 762, 879
BcoDI	GTCTC	3 cut(s)	30, 576, 843
BfaI	CTAG	2 cut(s)	291, 570
BfuAI	ACCTGC	1 cut(s)	604
BisI	GCNGC	6 cut(s)	249, 270, 413, 549, 552, 892
BlpI	GCTNAGC	2 cut(s)	720, 792
BlsI	GCNGC	6 cut(s)	250, 271, 414, 550, 553, 893
Bme1390I	CCNGG	3 cut(s)	563, 762, 879
Bme18I	GGWCC	2 cut(s)	67, 515
BmgBI	CACGTC	2 cut(s)	57, 618
BmgT120I	GGNCC	2 cut(s)	67, 515
BmiI	GGNNCC	2 cut(s)	69, 675
BmrFI	CCNGG	3 cut(s)	563, 762, 879
BmsI	GCATC	2 cut(s)	277, 848
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BpmI	CTGGAG	2 cut(s)	663, 744
Bpu10I	CCTNAGC	1 cut(s)	782
Bpu1102I	GCTNAGC	2 cut(s)	720, 792
Bpu14I	TTCGAA	1 cut(s)	452
BsaJI	CCNNGG	5 cut(s)	148, 486, 561, 877, 900
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	5 cut(s)	128, 206, 644, 787, 881
Bse1I	ACTGG	3 cut(s)	17, 235, 502
Bse21I	CCTNAGG	1 cut(s)	399
Bse3DI	GCAATG	2 cut(s)	431, 894
BseBI	CCWGG	3 cut(s)	563, 762, 879
BseDI	CCNNGG	5 cut(s)	148, 486, 561, 877, 900
BseGI	GGATG	1 cut(s)	842
BseLI	CCNNNNNNNGG	5 cut(s)	128, 206, 644, 787, 881
BseMI	GCAATG	2 cut(s)	431, 894
BseMII	CTCAG	4 cut(s)	191, 390, 711, 788
BseNI	ACTGG	3 cut(s)	17, 235, 502
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	5 cut(s)	235, 256, 424, 535, 903
BsgI	GTGCAG	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	554
BsiHKAI	GWGCWC	2 cut(s)	147, 495
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	53, 442
BslI	CCNNNNNNNGG	5 cut(s)	128, 206, 644, 787, 881
BsmAI	GTCTC	3 cut(s)	30, 576, 843
BsmFI	GGGAC	2 cut(s)	53, 442
Bsp119I	TTCGAA	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	147, 495
Bsp143I	GATC	4 cut(s)	159, 387, 539, 764
Bsp1720I	GCTNAGC	2 cut(s)	720, 792
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	4 cut(s)	87, 93, 109, 552
BspCNI	CTCAG	4 cut(s)	190, 391, 712, 789
BspFNI	CGCG	1 cut(s)	554
BspLI	GGNNCC	2 cut(s)	69, 675
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	1 cut(s)	772
BspT104I	TTCGAA	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	111
BsrDI	GCAATG	2 cut(s)	431, 894
BsrI	ACTGG	3 cut(s)	17, 235, 502
BssECI	CCNNGG	5 cut(s)	148, 486, 561, 877, 900
BssMI	GATC	4 cut(s)	159, 387, 539, 764
BssT1I	CCWWGG	3 cut(s)	148, 486, 900
Bst2UI	CCWGG	3 cut(s)	563, 762, 879
Bst4CI	ACNGT	3 cut(s)	75, 532, 812
BstBI	TTCGAA	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	324, 872
BstDEI	CTNAG	6 cut(s)	177, 399, 720, 782, 792, 797
BstDSI	CCRYGG	1 cut(s)	148
BstEII	GGTNACC	1 cut(s)	104
BstENI	CCTNNNNNAGG	2 cut(s)	204, 642
BstF5I	GGATG	1 cut(s)	842
BstFNI	CGCG	1 cut(s)	554
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	4 cut(s)	162, 390, 542, 767
BstMAI	GTCTC	3 cut(s)	30, 576, 843
BstMBI	GATC	4 cut(s)	159, 387, 539, 764
BstNI	CCWGG	3 cut(s)	563, 762, 879
BstNSI	RCATGY	1 cut(s)	371
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	3 cut(s)	561, 760, 877
BstUI	CGCG	1 cut(s)	554
BstV1I	GCAGC	5 cut(s)	235, 256, 424, 535, 903
BstX2I	RGATCY	1 cut(s)	764
BstXI	CCANNNNNNTGG	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	764
Bsu36I	CCTNAGG	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	148
BtrI	CACGTC	2 cut(s)	57, 618
BtsCI	GGATG	1 cut(s)	842
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	6 cut(s)	24, 39, 162, 361, 495, 673
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	2 cut(s)	324, 872
CaiI	CAGNNNCTG	1 cut(s)	767
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	2 cut(s)	67, 515
CviAII	CATG	4 cut(s)	149, 368, 586, 661
DdeI	CTNAG	6 cut(s)	177, 399, 720, 782, 792, 797
DpnI	GATC	4 cut(s)	161, 389, 541, 766
DpnII	GATC	4 cut(s)	159, 387, 539, 764
Ecl136II	GAGCTC	1 cut(s)	493
Eco130I	CCWWGG	3 cut(s)	148, 486, 900
Eco24I	GRGCYC	1 cut(s)	495
Eco47I	GGWCC	2 cut(s)	67, 515
Eco53kI	GAGCTC	1 cut(s)	493
Eco81I	CCTNAGG	1 cut(s)	399
Eco91I	GGTNACC	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	493
EcoNI	CCTNNNNNAGG	2 cut(s)	204, 642
EcoO109I	RGGNCCY	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	104
EcoRII	CCWGG	3 cut(s)	561, 760, 877
EcoT14I	CCWWGG	3 cut(s)	148, 486, 900
EcoT38I	GRGCYC	1 cut(s)	495
ErhI	CCWWGG	3 cut(s)	148, 486, 900
FaeI	CATG	4 cut(s)	152, 371, 589, 664
FaqI	GGGAC	2 cut(s)	53, 442
FatI	CATG	4 cut(s)	148, 367, 585, 660
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	6 cut(s)	249, 270, 413, 549, 552, 892
FokI	GGATG	1 cut(s)	829
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	6 cut(s)	249, 270, 413, 549, 552, 892
FspBI	CTAG	2 cut(s)	291, 570
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	6 cut(s)	249, 270, 413, 549, 552, 892
GsuI	CTGGAG	2 cut(s)	663, 744
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	1 cut(s)	556
Hin1II	CATG	4 cut(s)	152, 371, 589, 664
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HinfI	GANTC	5 cut(s)	80, 132, 278, 443, 449
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	2 cut(s)	98, 382
Hpy188I	TCNGA	7 cut(s)	79, 127, 159, 180, 442, 448, 651
Hpy188III	TCNNGA	4 cut(s)	398, 524, 685, 846
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	3 cut(s)	75, 532, 812
HpyCH4IV	ACGT	2 cut(s)	56, 617
HpyCH4V	TGCA	3 cut(s)	272, 407, 436
HpyF3I	CTNAG	6 cut(s)	177, 399, 720, 782, 792, 797
HpySE526I	ACGT	2 cut(s)	56, 617
Hsp92II	CATG	4 cut(s)	152, 371, 589, 664
HspAI	GCGC	1 cut(s)	554
Kzo9I	GATC	4 cut(s)	159, 387, 539, 764
LmnI	GCTCC	3 cut(s)	150, 490, 604
Lsp1109I	GCAGC	5 cut(s)	235, 256, 424, 535, 903
LweI	GCATC	2 cut(s)	277, 848
MaeI	CTAG	2 cut(s)	291, 570
MaeII	ACGT	2 cut(s)	56, 617
MaeIII	GTNAC	3 cut(s)	104, 293, 370
MalI	GATC	4 cut(s)	161, 389, 541, 766
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	4 cut(s)	159, 387, 539, 764
MboII	GAAGA	1 cut(s)	182
MflI	RGATCY	1 cut(s)	764
MhlI	GDGCHC	2 cut(s)	147, 495
MluCI	AATT	2 cut(s)	215, 419
MlyI	GAGTC	2 cut(s)	74, 437
MmeI	TCCRAC	2 cut(s)	102, 483
MseI	TTAA	1 cut(s)	744
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	3 cut(s)	563, 762, 879
MvaI	CCWGG	3 cut(s)	563, 762, 879
MvnI	CGCG	1 cut(s)	554
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	4 cut(s)	159, 387, 539, 764
NlaIII	CATG	4 cut(s)	152, 371, 589, 664
NlaIV	GGNNCC	2 cut(s)	69, 675
NmuCI	GTSAC	2 cut(s)	104, 370
NspI	RCATGY	1 cut(s)	371
NspV	TTCGAA	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	17
PciI	ACATGT	1 cut(s)	367
PfeI	GAWTC	3 cut(s)	132, 278, 449
PfoI	TCCNGGA	1 cut(s)	760
PkrI	GCNGC	6 cut(s)	250, 271, 414, 550, 553, 893
PleI	GAGTC	2 cut(s)	74, 437
PpsI	GAGTC	2 cut(s)	74, 437
PpuMI	RGGWCCY	1 cut(s)	67
PscI	ACATGT	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	495
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	3 cut(s)	561, 760, 877
PspEI	GGTNACC	1 cut(s)	104
PspGI	CCWGG	3 cut(s)	561, 760, 877
PspN4I	GGNNCC	2 cut(s)	69, 675
PspPI	GGNCC	2 cut(s)	67, 515
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	1 cut(s)	764
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	495
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	6 cut(s)	249, 270, 413, 549, 552, 892
Sau3AI	GATC	4 cut(s)	159, 387, 539, 764
Sau96I	GGNCC	2 cut(s)	67, 515
SchI	GAGTC	2 cut(s)	74, 437
ScrFI	CCNGG	3 cut(s)	563, 762, 879
SduI	GDGCHC	2 cut(s)	147, 495
SfaNI	GCATC	2 cut(s)	277, 848
SfuI	TTCGAA	1 cut(s)	452
SinI	GGWCC	2 cut(s)	67, 515
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	2 cut(s)	215, 419
SsiI	CCGC	4 cut(s)	87, 93, 109, 552
SspMI	CTAG	2 cut(s)	291, 570
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	3 cut(s)	561, 760, 877
StyI	CCWWGG	3 cut(s)	148, 486, 900
TaaI	ACNGT	3 cut(s)	75, 532, 812
TaiI	ACGT	2 cut(s)	59, 620
TaqI	TCGA	2 cut(s)	452, 538
TasI	AATT	2 cut(s)	215, 419
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	3 cut(s)	132, 278, 449
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	6 cut(s)	24, 46, 169, 361, 502, 673
TseFI	GTSAC	2 cut(s)	104, 370
TseI	GCWGC	5 cut(s)	248, 269, 412, 548, 891
Tsp45I	GTSAC	2 cut(s)	104, 370
TspDTI	ATGAA	3 cut(s)	183, 378, 821
TspRI	CASTG	6 cut(s)	24, 46, 169, 361, 502, 673
VpaK11BI	GGWCC	2 cut(s)	67, 515
XagI	CCTNNNNNAGG	2 cut(s)	204, 642
XceI	RCATGY	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XspI	CTAG	2 cut(s)	291, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.