Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8512843.1

Orthogroup ID

OG0009044

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1525

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8512843.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ccccgctccgactctcccgccaccgcctcctccgctcaccgctctcaccagccgtcggatgggatcagcaaggtgctccacggcggtcagatcaccgaggaagaagctcagagcctgaacaaaaagaagccttgctccgggtacaaaatgaaggagatttccggaagcgggatattcgcggctggagaaggcaatgcggagccggagccgggtcgggtttaccagcaggcggtgaaagggatcagtcaaatctcgttcagcgttgacgagcacctgagcccgaagaagccgacgagtgttccggaggtggcgaagcagaaggagctgagtgggactttgcagtcggaattggattccaagacgcagaaggggatttcaaatgccaagaccaaggagcttagtggaaatgacatctttggccctcccccggagattgttccccgatcggtcaatgctgttcacacccacgagtataagcagagtaaagattccgcggagccggcgcccagaaatcttcgcacttctgtcaaagtttccaatccggctggaggtcagagtaaaatcttgttcactgaggaccctgttgtcaagacttccaagaaaattcataaccagaagtttgcagagctgacaggcaatgacatatttaagggagatgtttctccgggatctgctgaaaagccactaagcacggctaagctgagagaaatgagtggcagcaacatctttgctgatgggaaggcggcatcaagagactatctaggtggtgttcgcaagccccctggtggcgagagcagcatctcattggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4057

Protein Analysis

270

Amino Acids

28.62

Weight (kDa)

9.21

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39860 AT4G39860 AT4G39860 AT4G39860
fragaria_vesca	FvH4_1g20950 FvH4_1g20950
malus_domestica	MD01G1029000.v1.1 MD15G1324500.v1.1
prunus_persica	Prupe.6G186300_v2.0.a1
pyrus_communis	pycom01g05710 pycom15g28630
rosa_chinensis	RchiOBHm_Chr2g0114441
rosa_laevigata	RLG00000018101
rosa_multiflora	Rmu_co8512843.1_g000001 Rmu_sc0000431.1_g000033
rosa_roxburghii	Rroxscaffold_2G00130150
rosa_rugosa	Rorug02G0190400
rosa_samantha	Rh2AG247500 Rh2BG257400 Rh2CG251000 Rh2DG255500
rosa_wichuraiana	Rw2G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	340, 584
AccB1I	GGYRCC	1 cut(s)	502
AccBSI	CCGCTC	3 cut(s)	6, 35, 42
AccII	CGCG	2 cut(s)	179, 494
AccIII	TCCGGA	2 cut(s)	161, 301
AclWI	GGATC	3 cut(s)	71, 248, 676
AcsI	RAATTY	1 cut(s)	603
AcyI	GRCGYC	1 cut(s)	503
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	9 cut(s)	55, 59, 137, 168, 209, 229, 427, 548, 785
AgsI	TTSAA	1 cut(s)	378
AjnI	CCWGG	1 cut(s)	781
AluBI	AGCT	5 cut(s)	107, 325, 397, 628, 700
AluI	AGCT	5 cut(s)	107, 325, 397, 628, 700
Alw21I	GWGCWC	2 cut(s)	78, 273
Alw26I	GTCTC	1 cut(s)	747
AlwI	GGATC	3 cut(s)	71, 248, 676
AlwNI	CAGNNNCTG	1 cut(s)	115
Aor13HI	TCCGGA	2 cut(s)	161, 301
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	2 cut(s)	717, 795
ApoI	RAATTY	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	2 cut(s)	419, 577
AsuC2I	CCSGG	4 cut(s)	139, 210, 428, 666
AsuHPI	GGTGA	4 cut(s)	29, 38, 85, 244
AvaII	GGWCC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	281
BauI	CACGAG	1 cut(s)	467
Bbv12I	GWGCWC	2 cut(s)	78, 273
BbvI	GCAGC	2 cut(s)	729, 807
BccI	CCATC	2 cut(s)	53, 728
BceAI	ACGGC	3 cut(s)	37, 97, 708
BciT130I	CCWGG	1 cut(s)	783
BcnI	CCSGG	4 cut(s)	139, 210, 428, 666
BcoDI	GTCTC	1 cut(s)	747
BfaI	CTAG	1 cut(s)	761
BfoI	RGCGCY	1 cut(s)	506
BisI	GCNGC	4 cut(s)	180, 718, 744, 796
BlpI	GCTNAGC	1 cut(s)	696
BlsI	GCNGC	4 cut(s)	181, 719, 745, 797
Bme1390I	CCNGG	5 cut(s)	139, 210, 428, 666, 783
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	2 cut(s)	419, 577
BmiI	GGNNCC	5 cut(s)	201, 207, 498, 504, 579
BmrFI	CCNGG	5 cut(s)	139, 210, 428, 666, 783
BmsI	GCATC	2 cut(s)	755, 807
BpmI	CTGGAG	2 cut(s)	204, 567
Bpu10I	CCTNAGC	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	696
BpuMI	CCSGG	4 cut(s)	139, 210, 428, 666
BsaHI	GRCGYC	1 cut(s)	503
BsaJI	CCNNGG	6 cut(s)	79, 96, 390, 426, 492, 781
BsaWI	WCCGGW	2 cut(s)	161, 301
Bsc4I	CCNNNNNNNGG	9 cut(s)	55, 59, 137, 168, 209, 229, 427, 548, 785
Bse118I	RCCGGY	1 cut(s)	499
Bse3DI	GCAATG	2 cut(s)	199, 643
BseAI	TCCGGA	2 cut(s)	161, 301
BseBI	CCWGG	1 cut(s)	783
BseDI	CCNNGG	6 cut(s)	79, 96, 390, 426, 492, 781
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	9 cut(s)	55, 59, 137, 168, 209, 229, 427, 548, 785
BseMI	GCAATG	2 cut(s)	199, 643
BseMII	CTCAG	5 cut(s)	122, 266, 317, 564, 692
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	729, 807
Bsh1236I	CGCG	2 cut(s)	179, 494
Bsh1285I	CGRYCG	1 cut(s)	446
BshFI	GGCC	1 cut(s)	420
BshNI	GGYRCC	1 cut(s)	502
BsiEI	CGRYCG	1 cut(s)	446
BsiHKAI	GWGCWC	2 cut(s)	78, 273
BsiSI	CCGG	9 cut(s)	138, 162, 203, 209, 302, 428, 500, 542, 665
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	9 cut(s)	55, 59, 137, 168, 209, 229, 427, 548, 785
BsmAI	GTCTC	1 cut(s)	747
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	420
Bsp1286I	GDGCHC	3 cut(s)	78, 273, 281
Bsp13I	TCCGGA	2 cut(s)	161, 301
Bsp143I	GATC	5 cut(s)	63, 90, 240, 443, 668
Bsp1720I	GCTNAGC	1 cut(s)	696
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	5 cut(s)	121, 267, 318, 565, 693
BspEI	TCCGGA	2 cut(s)	161, 301
BspFNI	CGCG	2 cut(s)	179, 494
BspLI	GGNNCC	5 cut(s)	201, 207, 498, 504, 579
BspPI	GGATC	3 cut(s)	71, 248, 676
BspT107I	GGYRCC	1 cut(s)	502
BsrBI	CCGCTC	3 cut(s)	6, 35, 42
BsrDI	GCAATG	2 cut(s)	199, 643
BsrFI	RCCGGY	1 cut(s)	499
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	6 cut(s)	79, 96, 390, 426, 492, 781
BssMI	GATC	5 cut(s)	63, 90, 240, 443, 668
BssNI	GRCGYC	1 cut(s)	503
BssSI	CACGAG	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	390
Bst2BI	CACGAG	1 cut(s)	467
Bst2UI	CCWGG	1 cut(s)	783
BstACI	GRCGYC	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	228, 501, 776
BstDEI	CTNAG	8 cut(s)	108, 275, 326, 398, 573, 686, 696, 701
BstDSI	CCRYGG	2 cut(s)	79, 492
BstF5I	GGATG	1 cut(s)	64
BstFNI	CGCG	2 cut(s)	179, 494
BstH2I	RGCGCY	1 cut(s)	506
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	5 cut(s)	66, 93, 243, 446, 671
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	5 cut(s)	63, 90, 240, 443, 668
BstMCI	CGRYCG	1 cut(s)	446
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 322, 500, 795
BstNI	CCWGG	1 cut(s)	783
BstSCI	CCNGG	5 cut(s)	137, 208, 426, 664, 781
BstUI	CGCG	2 cut(s)	179, 494
BstV1I	GCAGC	2 cut(s)	729, 807
BstX2I	RGATCY	1 cut(s)	668
BstYI	RGATCY	1 cut(s)	668
BsuRI	GGCC	1 cut(s)	420
BtgI	CCRYGG	2 cut(s)	79, 492
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	570
Cac8I	GCNNGC	3 cut(s)	228, 501, 776
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	505
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	419, 577
Cfr42I	CCGCGG	1 cut(s)	495
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	142
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	8 cut(s)	108, 275, 326, 398, 573, 686, 696, 701
DinI	GGCGCC	1 cut(s)	504
DpnI	GATC	5 cut(s)	65, 92, 242, 445, 670
DpnII	GATC	5 cut(s)	63, 90, 240, 443, 668
DrdI	GACNNNNNNGTC	2 cut(s)	340, 584
DseDI	GACNNNNNNGTC	2 cut(s)	340, 584
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	781
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	281
EgeI	GGCGCC	1 cut(s)	504
EheI	GGCGCC	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	390
FaiI	YATR	3 cut(s)	474, 609, 644
FaqI	GGGAC	1 cut(s)	346
FauI	CCCGC	3 cut(s)	11, 25, 161
Fnu4HI	GCNGC	4 cut(s)	180, 718, 744, 796
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	281
Fsp4HI	GCNGC	4 cut(s)	180, 718, 744, 796
FspBI	CTAG	1 cut(s)	761
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	4 cut(s)	180, 718, 744, 796
GsuI	CTGGAG	2 cut(s)	204, 567
HaeII	RGCGCY	1 cut(s)	506
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	9 cut(s)	138, 162, 203, 209, 302, 428, 500, 542, 665
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	1 cut(s)	505
Hin1I	GRCGYC	1 cut(s)	503
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	3 cut(s)	11, 353, 488
HpaII	CCGG	9 cut(s)	138, 162, 203, 209, 302, 428, 500, 542, 665
HphI	GGTGA	4 cut(s)	29, 38, 85, 244
Hpy166II	GTNNAC	4 cut(s)	220, 265, 460, 570
Hpy188I	TCNGA	6 cut(s)	10, 58, 90, 111, 346, 555
Hpy188III	TCNNGA	4 cut(s)	162, 302, 589, 750
Hpy8I	GTNNAC	4 cut(s)	220, 265, 460, 570
Hpy99I	CGWCG	2 cut(s)	58, 295
HpyAV	CCTTC	5 cut(s)	145, 182, 313, 361, 733
HpyCH4V	TGCA	2 cut(s)	340, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 322, 500, 795
HpyF3I	CTNAG	8 cut(s)	108, 275, 326, 398, 573, 686, 696, 701
Hsp92I	GRCGYC	1 cut(s)	503
HspAI	GCGC	1 cut(s)	503
KasI	GGCGCC	1 cut(s)	502
Kpn2I	TCCGGA	2 cut(s)	161, 301
KroI	GCCGGC	1 cut(s)	499
KroNI	GCCGGC	1 cut(s)	501
KspI	CCGCGG	1 cut(s)	495
Kzo9I	GATC	5 cut(s)	63, 90, 240, 443, 668
LmnI	GCTCC	8 cut(s)	11, 81, 140, 199, 205, 322, 394, 496
Lsp1109I	GCAGC	2 cut(s)	729, 807
LweI	GCATC	2 cut(s)	755, 807
MaeI	CTAG	1 cut(s)	761
MalI	GATC	5 cut(s)	65, 92, 242, 445, 670
MbiI	CCGCTC	3 cut(s)	6, 35, 42
MboI	GATC	5 cut(s)	63, 90, 240, 443, 668
MboII	GAAGA	3 cut(s)	113, 295, 506
MflI	RGATCY	1 cut(s)	668
MhlI	GDGCHC	3 cut(s)	78, 273, 281
MluCI	AATT	2 cut(s)	347, 603
Mly113I	GGCGCC	1 cut(s)	503
MlyI	GAGTC	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	33, 36, 324
MnlI	CCTC	7 cut(s)	37, 40, 91, 298, 432, 542, 568
MroI	TCCGGA	2 cut(s)	161, 301
MroNI	GCCGGC	1 cut(s)	499
MseI	TTAA	2 cut(s)	648, 811
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	9 cut(s)	138, 162, 203, 209, 302, 428, 500, 542, 665
MspR9I	CCNGG	5 cut(s)	139, 210, 428, 666, 783
MvaI	CCWGG	1 cut(s)	783
MvnI	CGCG	2 cut(s)	179, 494
MwoI	GCNNNNNNNGC	4 cut(s)	32, 322, 500, 795
NaeI	GCCGGC	1 cut(s)	501
NarI	GGCGCC	1 cut(s)	503
NciI	CCSGG	4 cut(s)	139, 210, 428, 666
NdeII	GATC	5 cut(s)	63, 90, 240, 443, 668
NgoMIV	GCCGGC	1 cut(s)	499
NlaIV	GGNNCC	5 cut(s)	201, 207, 498, 504, 579
PdiI	GCCGGC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	353, 488
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	4 cut(s)	181, 719, 745, 797
Ple19I	CGATCG	1 cut(s)	446
PleI	GAGTC	1 cut(s)	5
PluTI	GGCGCC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	5
PpuMI	RGGWCCY	1 cut(s)	577
Psp5II	RGGWCCY	1 cut(s)	577
Psp6I	CCWGG	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	781
PspN4I	GGNNCC	5 cut(s)	201, 207, 498, 504, 579
PspPI	GGNCC	2 cut(s)	419, 577
PspPPI	RGGWCCY	1 cut(s)	577
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	668
PvuI	CGATCG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SacII	CCGCGG	1 cut(s)	495
SaqAI	TTAA	2 cut(s)	648, 811
SatI	GCNGC	4 cut(s)	180, 718, 744, 796
Sau3AI	GATC	5 cut(s)	63, 90, 240, 443, 668
Sau96I	GGNCC	2 cut(s)	419, 577
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	5 cut(s)	139, 210, 428, 666, 783
SduI	GDGCHC	3 cut(s)	78, 273, 281
SfaNI	GCATC	2 cut(s)	755, 807
SfoI	GGCGCC	1 cut(s)	504
Sfr303I	CCGCGG	1 cut(s)	495
SgrBI	CCGCGG	1 cut(s)	495
SinI	GGWCC	1 cut(s)	577
Sse9I	AATT	2 cut(s)	347, 603
SspDI	GGCGCC	1 cut(s)	502
SspMI	CTAG	1 cut(s)	761
StyD4I	CCNGG	5 cut(s)	137, 208, 426, 664, 781
StyI	CCWWGG	1 cut(s)	390
TaqII	GACCGA	1 cut(s)	436
TasI	AATT	2 cut(s)	347, 603
TauI	GCSGC	2 cut(s)	182, 746
TfiI	GAWTC	2 cut(s)	353, 488
Tru1I	TTAA	2 cut(s)	648, 811
Tru9I	TTAA	2 cut(s)	648, 811
TscAI	CASTG	1 cut(s)	577
TseI	GCWGC	2 cut(s)	717, 795
TspDTI	ATGAA	2 cut(s)	164, 596
TspRI	CASTG	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	577
XapI	RAATTY	1 cut(s)	603
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
XspI	CTAG	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.