Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009044

Physical Location & Seq

Genomic Coordinates Forward (+)

5567169 .. 5569202

Gene Structure 2034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05710.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTTAGATGAGGTTGCAAGTGAATGGGATGTAATTTACCTTTTTCTTTTTAATGTCATTAACATTTTTTTGTTTATTTATTTATTATTTGCTATTTTCTATTCATCCAAAAGCCAAACGAGGAAGCGAGCCAGACCGAAAACAATGGAGAGAACACCACTGAGAAAGCCTCGCCGAGACACTGCCGATATGCTGACGTGGAAAGAGGTCCCACACTCCGACTCTCCGGCCACCGCCTCCTCCGCCCCCCGATCTCATCAGCCGTCCGATGGAATCAGCAAGGTGCTCCATGGCGGTCAGATCGATGATGAAGAAGCTCAGAGCCTCAACAAACAGAAGCCTTGTTCAGGCTATAAATTGAAGGAGATTACTGGAAATTGTATATTTGCAGCTGGGTCAGGCAAGGATGCTGCACCGGAATCTAATGATTCTAGTAACAAAACGGGGCTTCGTATTTATCAGCAAGCACTCAATGGAGTCAGTCAAATCTCATTCAGTGTTGATGAACATGTCACGCCCAAGAAGCCTGTCACTGTTCCTGAGGTTGCCAAGCAGCGTGAATTGAGTGGGACATTGCAGTCCGACTCAGATTCAAAATCCAAGAAGAGCGTATCAAATGCCAAGTCCAAGGAACTCACTGGAAATGACATCTTTGGCACTCCTCCTGAAGTCTTGCCTCGATCATTGGCTGCTGCTCACACCCTGCAAACTAGAGAAACCAGAGACATGGGGGAACCTACACCCCGAAATCTGCGCACCTCTGTCAAAGTTTCAAATCCTGCTGGAGGTCAGAGTAATATTATGTTCAGTGAGGAACCTGTTTCCAAGACTCCAAGGAAAATACATAACCAGAAGTTTGCAGAGCTGACGGGGAATGGTATATTTAAGGGAGATGTTCCTCCAGGATCTACTGAAAAGCCCCTGAGCACGGCTAAGCTGAGAGAGATGAATGGCAGCAACATCTTTGCTGATGGAAAGGCATCATCCAGAGACTATCTGGGTGGTGTTCGTAAGCCCCCAGGTGGAGAAAGCAGCATCGCCTTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4057

Protein Analysis

350

Amino Acids

38.05

Weight (kDa)

9.36

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39860 AT4G39860 AT4G39860 AT4G39860
fragaria_vesca	FvH4_1g20950 FvH4_1g20950
malus_domestica	MD01G1029000.v1.1 MD15G1324500.v1.1
prunus_persica	Prupe.6G186300_v2.0.a1
pyrus_communis	pycom01g05710 pycom15g28630
rosa_chinensis	RchiOBHm_Chr2g0114441
rosa_laevigata	RLG00000018101
rosa_multiflora	Rmu_co8512843.1_g000001 Rmu_sc0000431.1_g000033
rosa_roxburghii	Rroxscaffold_2G00130150
rosa_rugosa	Rorug02G0190400
rosa_samantha	Rh2AG247500 Rh2BG257400 Rh2CG251000 Rh2DG255500
rosa_wichuraiana	Rw2G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	577
Acc16I	TGCGCA	1 cut(s)	755
AciI	CCGC	3 cut(s)	234, 243, 294
AclWI	GGATC	1 cut(s)	913
AcoI	YGGCCR	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	687
AfiI	CCNNNNNNNGG	5 cut(s)	269, 347, 785, 928, 1022
AflIII	ACRYGT	1 cut(s)	508
AgsI	TTSAA	3 cut(s)	361, 594, 774
AjiI	CACGTC	1 cut(s)	198
AjnI	CCWGG	2 cut(s)	901, 1018
AluBI	AGCT	4 cut(s)	317, 392, 865, 937
AluI	AGCT	4 cut(s)	317, 392, 865, 937
Alw21I	GWGCWC	2 cut(s)	288, 929
Alw26I	GTCTC	3 cut(s)	171, 717, 984
AlwI	GGATC	1 cut(s)	913
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	7 cut(s)	389, 410, 553, 689, 692, 954, 1032
ArsI	GACNNNNNNTTYG	2 cut(s)	608, 640
AspLEI	GCGC	1 cut(s)	756
AspS9I	GGNCC	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	208
AxyI	CCTNAGG	1 cut(s)	540
Bbv12I	GWGCWC	2 cut(s)	288, 929
BbvI	GCAGC	7 cut(s)	397, 401, 565, 676, 679, 966, 1044
BccI	CCATC	2 cut(s)	263, 965
BceAI	ACGGC	2 cut(s)	247, 945
BciT130I	CCWGG	2 cut(s)	903, 1020
BcoDI	GTCTC	3 cut(s)	171, 717, 984
BfaI	CTAG	2 cut(s)	432, 711
BisI	GCNGC	7 cut(s)	390, 411, 554, 690, 693, 955, 1033
BlpI	GCTNAGC	1 cut(s)	933
BlsI	GCNGC	7 cut(s)	391, 412, 555, 691, 694, 956, 1034
Bme1390I	CCNGG	2 cut(s)	903, 1020
Bme18I	GGWCC	1 cut(s)	208
BmgBI	CACGTC	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	3 cut(s)	210, 735, 816
BmrFI	CCNGG	2 cut(s)	903, 1020
BmsI	GCATC	3 cut(s)	397, 989, 1044
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
BpmI	CTGGAG	2 cut(s)	804, 885
Bpu10I	CCTNAGC	1 cut(s)	923
Bpu1102I	GCTNAGC	1 cut(s)	933
Bsa29I	ATCGAT	1 cut(s)	303
BsaJI	CCNNGG	5 cut(s)	289, 627, 833, 1018, 1041
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	5 cut(s)	269, 347, 785, 928, 1022
Bse1I	ACTGG	2 cut(s)	376, 643
Bse21I	CCTNAGG	1 cut(s)	540
Bse3DI	GCAATG	1 cut(s)	572
BseBI	CCWGG	2 cut(s)	903, 1020
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	5 cut(s)	289, 627, 833, 1018, 1041
BseGI	GGATG	4 cut(s)	34, 104, 412, 983
BseLI	CCNNNNNNNGG	5 cut(s)	269, 347, 785, 928, 1022
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	6 cut(s)	152, 332, 531, 600, 914, 929
BseNI	ACTGG	2 cut(s)	376, 643
BseRI	GAGGAG	2 cut(s)	229, 651
BseXI	GCAGC	7 cut(s)	397, 401, 565, 676, 679, 966, 1044
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	303
BsiHKAI	GWGCWC	2 cut(s)	288, 929
BsiSI	CCGG	2 cut(s)	227, 416
BslFI	GGGAC	2 cut(s)	194, 583
BslI	CCNNNNNNNGG	5 cut(s)	269, 347, 785, 928, 1022
BsmAI	GTCTC	3 cut(s)	171, 717, 984
BsmFI	GGGAC	2 cut(s)	194, 583
BsnI	GGCC	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	288, 929
Bsp143I	GATC	4 cut(s)	251, 300, 680, 905
Bsp1720I	GCTNAGC	1 cut(s)	933
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	3 cut(s)	234, 243, 294
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	6 cut(s)	153, 331, 532, 599, 915, 930
BspDI	ATCGAT	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	210, 735, 816
BspPI	GGATC	1 cut(s)	913
BspQI	GCTCTTC	1 cut(s)	599
BsrDI	GCAATG	1 cut(s)	572
BsrI	ACTGG	2 cut(s)	376, 643
BssECI	CCNNGG	5 cut(s)	289, 627, 833, 1018, 1041
BssMI	GATC	4 cut(s)	251, 300, 680, 905
BssT1I	CCWWGG	4 cut(s)	289, 627, 833, 1041
Bst2UI	CCWGG	2 cut(s)	903, 1020
Bst4CI	ACNGT	1 cut(s)	535
Bst6I	CTCTTC	1 cut(s)	599
BstC8I	GCNNGC	2 cut(s)	129, 465
BstDEI	CTNAG	7 cut(s)	161, 318, 540, 586, 923, 933, 938
BstDSI	CCRYGG	1 cut(s)	289
BstENI	CCTNNNNNAGG	2 cut(s)	345, 783
BstF5I	GGATG	4 cut(s)	34, 104, 412, 983
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	4 cut(s)	254, 303, 683, 908
BstMAI	GTCTC	3 cut(s)	171, 717, 984
BstMBI	GATC	4 cut(s)	251, 300, 680, 905
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 523
BstNI	CCWGG	2 cut(s)	903, 1020
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	2 cut(s)	901, 1018
BstV1I	GCAGC	7 cut(s)	397, 401, 565, 676, 679, 966, 1044
BstX2I	RGATCY	1 cut(s)	905
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	905
Bsu15I	ATCGAT	1 cut(s)	303
Bsu36I	CCTNAGG	1 cut(s)	540
BsuRI	GGCC	1 cut(s)	230
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	1021
BtrI	CACGTC	1 cut(s)	198
BtsCI	GGATG	4 cut(s)	34, 104, 412, 983
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	6 cut(s)	158, 180, 502, 531, 636, 814
Cac8I	GCNNGC	2 cut(s)	129, 465
CfoI	GCGC	1 cut(s)	756
Cfr13I	GGNCC	1 cut(s)	208
ClaI	ATCGAT	1 cut(s)	303
CviAII	CATG	3 cut(s)	290, 509, 727
DdeI	CTNAG	7 cut(s)	161, 318, 540, 586, 923, 933, 938
DpnI	GATC	4 cut(s)	253, 302, 682, 907
DpnII	GATC	4 cut(s)	251, 300, 680, 905
DrdI	GACNNNNNNGTC	1 cut(s)	577
DseDI	GACNNNNNNGTC	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
EciI	GGCGGA	1 cut(s)	232
Eco130I	CCWWGG	4 cut(s)	289, 627, 833, 1041
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	687
Eco81I	CCTNAGG	1 cut(s)	540
EcoNI	CCTNNNNNAGG	2 cut(s)	345, 783
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	901, 1018
EcoT14I	CCWWGG	4 cut(s)	289, 627, 833, 1041
ErhI	CCWWGG	4 cut(s)	289, 627, 833, 1041
FaeI	CATG	3 cut(s)	293, 512, 730
FaiI	YATR	9 cut(s)	191, 291, 354, 383, 510, 728, 803, 846, 881
FaqI	GGGAC	2 cut(s)	194, 583
FatI	CATG	3 cut(s)	289, 508, 726
Fnu4HI	GCNGC	7 cut(s)	390, 411, 554, 690, 693, 955, 1033
FokI	GGATG	4 cut(s)	41, 91, 419, 970
Fsp4HI	GCNGC	7 cut(s)	390, 411, 554, 690, 693, 955, 1033
FspBI	CTAG	2 cut(s)	432, 711
FspI	TGCGCA	1 cut(s)	755
GlaI	GCGC	1 cut(s)	755
GluI	GCNGC	7 cut(s)	390, 411, 554, 690, 693, 955, 1033
GsaI	CCCAGC	1 cut(s)	396
GsuI	CTGGAG	2 cut(s)	804, 885
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	2 cut(s)	227, 416
HhaI	GCGC	1 cut(s)	756
Hin1II	CATG	3 cut(s)	293, 512, 730
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HinfI	GANTC	8 cut(s)	221, 273, 419, 428, 477, 584, 590, 829
HpaII	CCGG	2 cut(s)	227, 416
Hpy188I	TCNGA	7 cut(s)	220, 268, 300, 321, 583, 589, 792
Hpy188III	TCNNGA	3 cut(s)	539, 665, 987
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	6 cut(s)	17, 389, 413, 577, 706, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 523
HpyF3I	CTNAG	7 cut(s)	161, 318, 540, 586, 923, 933, 938
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	3 cut(s)	293, 512, 730
HspAI	GCGC	1 cut(s)	754
Kzo9I	GATC	4 cut(s)	251, 300, 680, 905
LguI	GCTCTTC	1 cut(s)	599
LmnI	GCTCC	1 cut(s)	291
Lsp1109I	GCAGC	7 cut(s)	397, 401, 565, 676, 679, 966, 1044
LweI	GCATC	3 cut(s)	397, 989, 1044
MaeI	CTAG	2 cut(s)	432, 711
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	3 cut(s)	434, 511, 529
MalI	GATC	4 cut(s)	253, 302, 682, 907
MboI	GATC	4 cut(s)	251, 300, 680, 905
MboII	GAAGA	2 cut(s)	323, 616
MflI	RGATCY	1 cut(s)	905
MhlI	GDGCHC	2 cut(s)	288, 929
MluCI	AATT	4 cut(s)	33, 356, 376, 560
MlyI	GAGTC	4 cut(s)	215, 486, 578, 823
MmeI	TCCRAC	2 cut(s)	243, 606
MseI	TTAA	3 cut(s)	51, 60, 885
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	2 cut(s)	227, 416
MspR9I	CCNGG	2 cut(s)	903, 1020
MvaI	CCWGG	2 cut(s)	903, 1020
MwoI	GCNNNNNNNGC	2 cut(s)	242, 523
NcoI	CCATGG	1 cut(s)	289
NdeII	GATC	4 cut(s)	251, 300, 680, 905
NlaIII	CATG	3 cut(s)	293, 512, 730
NlaIV	GGNNCC	3 cut(s)	210, 735, 816
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	2 cut(s)	511, 529
NsbI	TGCGCA	1 cut(s)	755
NspI	RCATGY	1 cut(s)	512
PciI	ACATGT	1 cut(s)	508
PciSI	GCTCTTC	1 cut(s)	599
PfeI	GAWTC	4 cut(s)	273, 419, 428, 590
PfoI	TCCNGGA	1 cut(s)	901
PkrI	GCNGC	7 cut(s)	391, 412, 555, 691, 694, 956, 1034
PleI	GAGTC	4 cut(s)	215, 485, 578, 823
PpsI	GAGTC	4 cut(s)	215, 485, 578, 823
PpuMI	RGGWCCY	1 cut(s)	208
PscI	ACATGT	1 cut(s)	508
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	901, 1018
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	2 cut(s)	901, 1018
PspN4I	GGNNCC	3 cut(s)	210, 735, 816
PspPI	GGNCC	1 cut(s)	208
PspPPI	RGGWCCY	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	905
PvuII	CAGCTG	1 cut(s)	392
SapI	GCTCTTC	1 cut(s)	599
SaqAI	TTAA	3 cut(s)	51, 60, 885
SatI	GCNGC	7 cut(s)	390, 411, 554, 690, 693, 955, 1033
Sau3AI	GATC	4 cut(s)	251, 300, 680, 905
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	4 cut(s)	215, 486, 578, 823
ScrFI	CCNGG	2 cut(s)	903, 1020
SduI	GDGCHC	2 cut(s)	288, 929
SfaNI	GCATC	3 cut(s)	397, 989, 1044
SinI	GGWCC	1 cut(s)	208
Sse9I	AATT	4 cut(s)	33, 356, 376, 560
SsiI	CCGC	3 cut(s)	234, 243, 294
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	2 cut(s)	432, 711
StyD4I	CCNGG	2 cut(s)	901, 1018
StyI	CCWWGG	4 cut(s)	289, 627, 833, 1041
TaaI	ACNGT	1 cut(s)	535
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	303, 679
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	4 cut(s)	33, 356, 376, 560
TfiI	GAWTC	4 cut(s)	273, 419, 428, 590
Tru1I	TTAA	3 cut(s)	51, 60, 885
Tru9I	TTAA	3 cut(s)	51, 60, 885
TscAI	CASTG	6 cut(s)	165, 187, 502, 538, 643, 814
TseFI	GTSAC	2 cut(s)	511, 529
TseI	GCWGC	7 cut(s)	389, 410, 553, 689, 692, 954, 1032
Tsp45I	GTSAC	2 cut(s)	511, 529
TspDTI	ATGAA	4 cut(s)	93, 324, 519, 962
TspRI	CASTG	6 cut(s)	165, 187, 502, 538, 643, 814
VpaK11BI	GGWCC	1 cut(s)	208
XagI	CCTNNNNNAGG	2 cut(s)	345, 783
XceI	RCATGY	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	994
XspI	CTAG	2 cut(s)	432, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.