Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000431.1

Orthogroup ID

OG0010203

Physical Location & Seq

Genomic Coordinates Forward (+)

180922 .. 182730

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000431.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1809 bp

atgaaatgtaagcacatagaccttttcaaaaaccctcacatggctgcttcagttccactgagtggtgagacccaactcattcagggtctgtttgcaattgttataaagggtcattggaaccacctcttgaaacccaagcttgcgtcttgtctcacctcatccaccattcaccaggtactcctgcaactctcactctatggctacagcccttcactttccttgtctttcttcaaatgggtggagtcagtacccaattacaagcactccttgcagtgctcttggaccatggtttacattctcactaagcacagacacttcaaaactgcacaccaattgcttgagaggattgcttttagggatttcttgtcatccccaactgttttaaatgctttgattccgacccaagatgacccggatgtgaattcccatgttttgagctggcttgtgataacttatgctaattctaagatgacccaggatgcgattcaggttttggagcatatgagggtacatgggtttaagccccatttgcatgcttgtactgtgttgttgaattgtttggttaaagagaggttgactagtatggtttggaaagtttataagaagatgattcggaccggggttgttccgaatattcatacatacaatgtgttgattcatgcttgttgcaagtctggggatatagaaaaggcggaaggattggtgagtgagatggagttgaggtgtgtgtttcctgatcttttcacctataatactttgatatcattgtattccaaaagaggtatgcactatgaagctttgtctgttcaaaatagaatggaaatggcaggagttagtcctgacatggtgacatacaattctcttatgtatggattttgtagagaaggaaggatgacagaagctgtaaaacttttccgcgatatcaaaggttgtgttcctaatcatataacttacactacattgattgatgggtattgtagagtgaatgacctggaagaagctttaagattgtgtgaggttatgaagtctaaggggctgtatcctggagttgttacttataattctattcttcgcaagttgtgtcaagaaggcaggatgagggatgcaaataagcttttgaatgagatgagtgaaaagaatgttgagcctgacaatgtcacatgtaacaccttgattaatgcttattgcaaaatcggagatatgatgtctgcagtgaaagtgaagaacaggatgttggcatctgggttgaagctggatgaatttacatataaagcactcattcatggattttgtatggtaccggaaatggacggtgctaaagatcttttatttagcatgcttgatgcggggttttgcccaagttattgcacatatacatggattatagatgcttactgcaaccaaggcaatgaagaagcagttataagattaccagatgagtttgttagaaaaggtattgttgttgatgtctctctgtacagggctttaataaggaggttatgtaaacgagaaaggctagattgtgctgaaaaggtttacagtttaatgcaagagaagggtatattagcagacagtgtagtatttactagtctagcatatgcttacttgaaagcaggaaaatcaagtgtagtttcagggatgttagatgaaatgttcaaaaggagattgatggtaacacgcaagatctacaggtctttcaatgcatcatatgccagtgaaaatgacatcttatgtctcttttgggagcatatggtcgagagaggcctgatgtcaaaaactgttatgattacggaaatgcagcaaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

602

Amino Acids

68.81

Weight (kDa)

8.72

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38730
fragaria_vesca	FvH4_1g20970
malus_domestica	MD01G1028900.v1.1 MD15G1324700.v1.1
prunus_persica	Prupe.6G186200_v2.0.a1 Prupe.6G186200_v2.0.a1
pyrus_communis	pycom01g05700 pycom15g28650
rosa_chinensis	RchiOBHm_Chr2g0114451 RchiOBHm_Chr6g0269561
rosa_laevigata	RLG00000018102
rosa_multiflora	Rmu_sc0000431.1_g000034 Rmu_sc0003151.1_g000025
rosa_roxburghii	Rroxscaffold_2G00130160
rosa_rugosa	Rorug02G0190400 Rorug02G0190500
rosa_samantha	Rh2AG247700 Rh2BG257500 Rh2CG251200 Rh2DG255600
rosa_wichuraiana	Rw2G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	104, 600, 1059, 1424
Acc65I	GGTACC	1 cut(s)	1297
AccB1I	GGYRCC	1 cut(s)	1297
AccB7I	CCANNNNNTGG	1 cut(s)	62
AccII	CGCG	1 cut(s)	918
AciI	CCGC	3 cut(s)	692, 916, 1346
AcsI	RAATTY	2 cut(s)	421, 1259
AcuI	CTGAAG	1 cut(s)	33
AdeI	CACNNNGTG	1 cut(s)	62
AfaI	GTAC	6 cut(s)	177, 249, 510, 541, 1299, 1478
AfiI	CCNNNNNNNGG	2 cut(s)	40, 62
AflIII	ACRYGT	1 cut(s)	1160
AhlI	ACTAGT	2 cut(s)	578, 1586
AjnI	CCWGG	4 cut(s)	171, 474, 990, 1042
AjuI	GAANNNNNNNTTGG	2 cut(s)	1217, 1249
AluBI	AGCT	7 cut(s)	139, 438, 797, 902, 1001, 1114, 1252
AluI	AGCT	7 cut(s)	139, 438, 797, 902, 1001, 1114, 1252
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	4 cut(s)	62, 155, 1474, 1739
AlwNI	CAGNNNCTG	2 cut(s)	88, 902
AoxI	GGCC	1 cut(s)	1762
ApeKI	GCWGC	2 cut(s)	44, 1798
ApoI	RAATTY	2 cut(s)	421, 1259
AseI	ATTAAT	1 cut(s)	1176
Asp718I	GGTACC	1 cut(s)	1297
AspS9I	GGNCC	2 cut(s)	282, 615
AsuC2I	CCSGG	2 cut(s)	413, 619
AsuHPI	GGTGA	6 cut(s)	77, 145, 161, 715, 736, 859
AvaII	GGWCC	2 cut(s)	282, 615
BaeI	ACNNNNGTAYC	2 cut(s)	500, 533
BanI	GGYRCC	1 cut(s)	1297
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	3 cut(s)	706, 962, 1663
BciT130I	CCWGG	4 cut(s)	173, 476, 992, 1044
BciVI	GTATCC	1 cut(s)	1050
BcnI	CCSGG	2 cut(s)	413, 619
BcoDI	GTCTC	4 cut(s)	62, 155, 1474, 1739
BcuI	ACTAGT	2 cut(s)	578, 1586
BfaI	CTAG	4 cut(s)	579, 1517, 1587, 1592
BfmI	CTRYAG	3 cut(s)	202, 1209, 1687
BfuI	GTATCC	1 cut(s)	1050
BglII	AGATCT	2 cut(s)	1321, 1683
BisI	GCNGC	2 cut(s)	45, 1799
BlsI	GCNGC	2 cut(s)	46, 1800
Bme1390I	CCNGG	6 cut(s)	173, 413, 476, 619, 992, 1044
Bme18I	GGWCC	2 cut(s)	282, 615
BmgT120I	GGNCC	2 cut(s)	282, 615
BmiI	GGNNCC	2 cut(s)	119, 1299
BmrFI	CCNGG	6 cut(s)	173, 413, 476, 619, 992, 1044
BmsI	GCATC	6 cut(s)	469, 1093, 1247, 1333, 1378, 1712
BpmI	CTGGAG	1 cut(s)	1065
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	2 cut(s)	413, 619
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	4 cut(s)	285, 474, 618, 1402
BsaWI	WCCGGW	1 cut(s)	1300
BsaXI	ACNNNNNCTCC	6 cut(s)	248, 278, 707, 737, 1486, 1516
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 62
Bse1I	ACTGG	1 cut(s)	1713
Bse3DI	GCAATG	1 cut(s)	1414
BseBI	CCWGG	4 cut(s)	173, 476, 992, 1044
BseDI	CCNNGG	4 cut(s)	285, 474, 618, 1402
BseLI	CCNNNNNNNGG	2 cut(s)	40, 62
BseMI	GCAATG	1 cut(s)	1414
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	1713
BseXI	GCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	918
BshFI	GGCC	1 cut(s)	1764
BshNI	GGYRCC	1 cut(s)	1297
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	3 cut(s)	413, 618, 1301
BslI	CCNNNNNNNGG	2 cut(s)	40, 62
BsmAI	GTCTC	4 cut(s)	62, 155, 1474, 1739
BsnI	GGCC	1 cut(s)	1764
Bso31I	GGTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp1407I	TGTACA	1 cut(s)	1476
Bsp143I	GATC	3 cut(s)	736, 1321, 1683
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	3 cut(s)	692, 916, 1346
BspANI	GGCC	1 cut(s)	1764
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	918
BspLI	GGNNCC	2 cut(s)	119, 1299
BspMAI	CTGCAG	1 cut(s)	1213
BspT107I	GGYRCC	1 cut(s)	1297
BspTNI	GGTCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	1414
BsrGI	TGTACA	1 cut(s)	1476
BsrI	ACTGG	1 cut(s)	1713
BssECI	CCNNGG	4 cut(s)	285, 474, 618, 1402
BssMI	GATC	3 cut(s)	736, 1321, 1683
BssT1I	CCWWGG	2 cut(s)	285, 1402
Bst2UI	CCWGG	4 cut(s)	173, 476, 992, 1044
Bst4CI	ACNGT	6 cut(s)	379, 544, 1313, 1541, 1574, 1780
BstAPI	GCANNNNNTGC	2 cut(s)	268, 1709
BstAUI	TGTACA	1 cut(s)	1476
BstC8I	GCNNGC	4 cut(s)	141, 440, 534, 1337
BstDEI	CTNAG	4 cut(s)	59, 303, 465, 1029
BstDSI	CCRYGG	1 cut(s)	285
BstFNI	CGCG	1 cut(s)	918
BstKTI	GATC	3 cut(s)	739, 1324, 1686
BstMAI	GTCTC	4 cut(s)	62, 155, 1474, 1739
BstMBI	GATC	3 cut(s)	736, 1321, 1683
BstMWI	GCNNNNNNNGC	4 cut(s)	268, 529, 1404, 1709
BstNI	CCWGG	4 cut(s)	173, 476, 992, 1044
BstNSI	RCATGY	3 cut(s)	536, 1164, 1339
BstSCI	CCNGG	6 cut(s)	171, 411, 474, 617, 990, 1042
BstSFI	CTRYAG	3 cut(s)	202, 1209, 1687
BstUI	CGCG	1 cut(s)	918
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	2 cut(s)	1321, 1683
BstYI	RGATCY	2 cut(s)	1321, 1683
BsuI	GTATCC	1 cut(s)	1050
BsuRI	GGCC	1 cut(s)	1764
BtgI	CCRYGG	1 cut(s)	285
BtsI	GCAGTG	2 cut(s)	278, 1218
BtsIMutI	CAGTG	5 cut(s)	56, 278, 1218, 1579, 1720
Cac8I	GCNNGC	4 cut(s)	141, 440, 534, 1337
CaiI	CAGNNNCTG	2 cut(s)	88, 902
Cfr13I	GGNCC	2 cut(s)	282, 615
CpoI	CGGWCCG	1 cut(s)	615
CseI	GACGC	1 cut(s)	132
CsiI	ACCWGGT	1 cut(s)	171
Csp6I	GTAC	6 cut(s)	176, 248, 509, 540, 1298, 1477
CspI	CGGWCCG	1 cut(s)	615
CviQI	GTAC	6 cut(s)	176, 248, 509, 540, 1298, 1477
DdeI	CTNAG	4 cut(s)	59, 303, 465, 1029
DpnI	GATC	3 cut(s)	738, 1323, 1685
DpnII	GATC	3 cut(s)	736, 1321, 1683
DraI	TTTAAA	1 cut(s)	384
DraIII	CACNNNGTG	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	707
Eco130I	CCWWGG	2 cut(s)	285, 1402
Eco147I	AGGCCT	1 cut(s)	1764
Eco31I	GGTCTC	1 cut(s)	62
Eco32I	GATATC	2 cut(s)	762, 922
Eco47I	GGWCC	2 cut(s)	282, 615
Eco57I	CTGAAG	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	4 cut(s)	171, 474, 990, 1042
EcoRV	GATATC	2 cut(s)	762, 922
EcoT14I	CCWWGG	2 cut(s)	285, 1402
EcoT22I	ATGCAT	1 cut(s)	1705
ErhI	CCWWGG	2 cut(s)	285, 1402
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FauI	CCCGC	1 cut(s)	1339
FauNDI	CATATG	4 cut(s)	501, 1597, 1708, 1749
Fnu4HI	GCNGC	2 cut(s)	45, 1799
Fsp4HI	GCNGC	2 cut(s)	45, 1799
FspBI	CTAG	4 cut(s)	579, 1517, 1587, 1592
GluI	GCNGC	2 cut(s)	45, 1799
GsuI	CTGGAG	1 cut(s)	1065
HaeIII	GGCC	1 cut(s)	1764
HapII	CCGG	3 cut(s)	413, 618, 1301
HgaI	GACGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HindIII	AAGCTT	4 cut(s)	137, 795, 999, 1112
HinfI	GANTC	5 cut(s)	242, 394, 484, 610, 655
HpaII	CCGG	3 cut(s)	413, 618, 1301
HphI	GGTGA	6 cut(s)	77, 145, 161, 715, 736, 859
Hpy166II	GTNNAC	4 cut(s)	292, 576, 1505, 1537
Hpy188I	TCNGA	4 cut(s)	399, 615, 630, 1196
Hpy188III	TCNNGA	5 cut(s)	127, 734, 839, 1085, 1756
Hpy8I	GTNNAC	4 cut(s)	292, 576, 1505, 1537
HpyAV	CCTTC	6 cut(s)	219, 689, 878, 882, 1082, 1549
HpyCH4III	ACNGT	6 cut(s)	379, 544, 1313, 1541, 1574, 1780
HpyF10VI	GCNNNNNNNGC	4 cut(s)	268, 529, 1404, 1709
HpyF3I	CTNAG	4 cut(s)	59, 303, 465, 1029
KpnI	GGTACC	1 cut(s)	1301
Kzo9I	GATC	3 cut(s)	736, 1321, 1683
LmnI	GCTCC	2 cut(s)	496, 1744
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	6 cut(s)	469, 1093, 1247, 1333, 1378, 1712
MabI	ACCWGGT	1 cut(s)	171
MaeI	CTAG	4 cut(s)	579, 1517, 1587, 1592
MaeIII	GTNAC	5 cut(s)	847, 1051, 1156, 1163, 1672
MalI	GATC	3 cut(s)	738, 1323, 1685
MboI	GATC	3 cut(s)	736, 1321, 1683
MboII	GAAGA	6 cut(s)	220, 616, 1007, 1061, 1234, 1424
MfeI	CAATTG	2 cut(s)	96, 332
MflI	RGATCY	2 cut(s)	1321, 1683
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	9 cut(s)	96, 253, 332, 421, 460, 553, 856, 1060, 1259
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	422
Mph1103I	ATGCAT	1 cut(s)	1705
MseI	TTAA	7 cut(s)	383, 519, 564, 1004, 1176, 1487, 1544
MslI	CAYNNNNRTG	2 cut(s)	531, 1375
MspI	CCGG	3 cut(s)	413, 618, 1301
MspR9I	CCNGG	6 cut(s)	173, 413, 476, 619, 992, 1044
MunI	CAATTG	2 cut(s)	96, 332
MvaI	CCWGG	4 cut(s)	173, 476, 992, 1044
MvnI	CGCG	1 cut(s)	918
MwoI	GCNNNNNNNGC	4 cut(s)	268, 529, 1404, 1709
NciI	CCSGG	2 cut(s)	413, 619
NcoI	CCATGG	1 cut(s)	285
NdeI	CATATG	4 cut(s)	501, 1597, 1708, 1749
NdeII	GATC	3 cut(s)	736, 1321, 1683
NlaIV	GGNNCC	2 cut(s)	119, 1299
NmuCI	GTSAC	2 cut(s)	847, 1156
NsiI	ATGCAT	1 cut(s)	1705
NspI	RCATGY	3 cut(s)	536, 1164, 1339
PaeI	GCATGC	2 cut(s)	536, 1339
PceI	AGGCCT	1 cut(s)	1764
PciI	ACATGT	1 cut(s)	1160
PfeI	GAWTC	4 cut(s)	394, 484, 610, 655
PflFI	GACNNNGTC	1 cut(s)	1154
PflMI	CCANNNNNTGG	1 cut(s)	62
PfoI	TCCNGGA	1 cut(s)	1042
PkrI	GCNGC	2 cut(s)	46, 1800
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PscI	ACATGT	1 cut(s)	1160
PshBI	ATTAAT	1 cut(s)	1176
PsiI	TTATAA	4 cut(s)	104, 600, 1059, 1424
Psp6I	CCWGG	4 cut(s)	171, 474, 990, 1042
PspGI	CCWGG	4 cut(s)	171, 474, 990, 1042
PspN4I	GGNNCC	2 cut(s)	119, 1299
PspPI	GGNCC	2 cut(s)	282, 615
PstI	CTGCAG	1 cut(s)	1213
PstNI	CAGNNNCTG	2 cut(s)	88, 902
PsuI	RGATCY	2 cut(s)	1321, 1683
PsyI	GACNNNGTC	1 cut(s)	1154
RsaI	GTAC	6 cut(s)	177, 249, 510, 541, 1299, 1478
RsaNI	GTAC	6 cut(s)	176, 248, 509, 540, 1298, 1477
RseI	CAYNNNNRTG	2 cut(s)	531, 1375
Rsr2I	CGGWCCG	1 cut(s)	615
RsrII	CGGWCCG	1 cut(s)	615
SaqAI	TTAA	7 cut(s)	383, 519, 564, 1004, 1176, 1487, 1544
SatI	GCNGC	2 cut(s)	45, 1799
Sau3AI	GATC	3 cut(s)	736, 1321, 1683
Sau96I	GGNCC	2 cut(s)	282, 615
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	6 cut(s)	173, 413, 476, 619, 992, 1044
SduI	GDGCHC	1 cut(s)	278
SexAI	ACCWGGT	1 cut(s)	171
SfaNI	GCATC	6 cut(s)	469, 1093, 1247, 1333, 1378, 1712
SfcI	CTRYAG	3 cut(s)	202, 1209, 1687
SinI	GGWCC	2 cut(s)	282, 615
SmiMI	CAYNNNNRTG	2 cut(s)	531, 1375
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SpeI	ACTAGT	2 cut(s)	578, 1586
SphI	GCATGC	2 cut(s)	536, 1339
Sse9I	AATT	9 cut(s)	96, 253, 332, 421, 460, 553, 856, 1060, 1259
SseBI	AGGCCT	1 cut(s)	1764
SsiI	CCGC	3 cut(s)	692, 916, 1346
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	4 cut(s)	579, 1517, 1587, 1592
StuI	AGGCCT	1 cut(s)	1764
StyD4I	CCNGG	6 cut(s)	171, 411, 474, 617, 990, 1042
StyI	CCWWGG	2 cut(s)	285, 1402
TaaI	ACNGT	6 cut(s)	379, 544, 1313, 1541, 1574, 1780
TaqI	TCGA	1 cut(s)	1755
TasI	AATT	9 cut(s)	96, 253, 332, 421, 460, 553, 856, 1060, 1259
TatI	WGTACW	2 cut(s)	539, 1476
TfiI	GAWTC	4 cut(s)	394, 484, 610, 655
Tru1I	TTAA	7 cut(s)	383, 519, 564, 1004, 1176, 1487, 1544
Tru9I	TTAA	7 cut(s)	383, 519, 564, 1004, 1176, 1487, 1544
TscAI	CASTG	5 cut(s)	63, 278, 1218, 1579, 1720
TseFI	GTSAC	2 cut(s)	847, 1156
TseI	GCWGC	2 cut(s)	44, 1798
Tsp45I	GTSAC	2 cut(s)	847, 1156
TspDTI	ATGAA	9 cut(s)	17, 626, 647, 807, 1037, 1271, 1272, 1425, 1662
TspGWI	ACGGA	1 cut(s)	1805
TspRI	CASTG	5 cut(s)	63, 278, 1218, 1579, 1720
Tth111I	GACNNNGTC	1 cut(s)	1154
Van91I	CCANNNNNTGG	1 cut(s)	62
VpaK11BI	GGWCC	2 cut(s)	282, 615
VspI	ATTAAT	1 cut(s)	1176
XapI	RAATTY	2 cut(s)	421, 1259
XceI	RCATGY	3 cut(s)	536, 1164, 1339
XspI	CTAG	4 cut(s)	579, 1517, 1587, 1592
Zsp2I	ATGCAT	1 cut(s)	1705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.