Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003151.1

Orthogroup ID

OG0010203

Physical Location & Seq

Genomic Coordinates Reverse (-)

67622 .. 68320

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003151.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atggctgcttcagttccactgagtggtgagacccaactcattcagagtctgtttgcaattgtagtaaagggtcattggaaccacctcttgaaacccaagcttgggtcttgtctcacctcttccaccattcaccaggtactcctgcaactctcactctatggctacagcccttcactttccttgtctttcttcaaatgggtggagtcggtacccaattacaagcactccttgcagtgctcttggaccatggttcacattctcactaagcacagacacttcaaaactgcacaccaattgcttgagaagattgcttttagggatttcttgtcgtccccaactgttttaaatgctttgattccgacccaagatgacccggatgtgaattcccatgttttgagctggcttgtgataacttatgctaattctaagatgacccaggatgcgattcaggttttggagcatatgagggtacatgggtttaagccccatttgcatgcttgtactgtgttgttgaattgtttggttaaagagaggttgactagtatggtttggaaagtttataagaagatgattcggaccggggttgttccgaatattcatacatacaatgtgttgattcatgcttgttgcaagtctggggatatagaaaaggcggaacgattggtgtgtttcctgatattttcacctataatactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

232

Amino Acids

26.35

Weight (kDa)

9.27

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38730
fragaria_vesca	FvH4_1g20970
malus_domestica	MD01G1028900.v1.1 MD15G1324700.v1.1
prunus_persica	Prupe.6G186200_v2.0.a1 Prupe.6G186200_v2.0.a1
pyrus_communis	pycom01g05700 pycom15g28650
rosa_chinensis	RchiOBHm_Chr2g0114451 RchiOBHm_Chr6g0269561
rosa_laevigata	RLG00000018102
rosa_multiflora	Rmu_sc0000431.1_g000034 Rmu_sc0003151.1_g000025
rosa_roxburghii	Rroxscaffold_2G00130160
rosa_rugosa	Rorug02G0190400 Rorug02G0190500
rosa_samantha	Rh2AG247700 Rh2BG257500 Rh2CG251200 Rh2DG255600
rosa_wichuraiana	Rw2G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	561
Acc65I	GGTACC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	208
AccB7I	CCANNNNNTGG	1 cut(s)	23
AciI	CCGC	1 cut(s)	653
AcsI	RAATTY	1 cut(s)	382
AdeI	CACNNNGTG	1 cut(s)	23
AfaI	GTAC	4 cut(s)	138, 210, 471, 502
AfiI	CCNNNNNNNGG	3 cut(s)	23, 101, 102
AgsI	TTSAA	4 cut(s)	91, 193, 280, 514
AhlI	ACTAGT	1 cut(s)	539
AjnI	CCWGG	2 cut(s)	132, 435
AluBI	AGCT	2 cut(s)	100, 399
AluI	AGCT	2 cut(s)	100, 399
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	2 cut(s)	23, 116
AlwNI	CAGNNNCTG	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	382
Asp718I	GGTACC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	243, 576
AsuC2I	CCSGG	2 cut(s)	374, 580
AsuHPI	GGTGA	4 cut(s)	38, 106, 122, 675
AvaII	GGWCC	2 cut(s)	243, 576
BaeI	ACNNNNGTAYC	2 cut(s)	461, 494
BanI	GGYRCC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	239
BciT130I	CCWGG	2 cut(s)	134, 437
BcnI	CCSGG	2 cut(s)	374, 580
BcoDI	GTCTC	2 cut(s)	23, 116
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	1 cut(s)	540
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	4 cut(s)	134, 374, 437, 580
Bme18I	GGWCC	2 cut(s)	243, 576
BmgT120I	GGNCC	2 cut(s)	243, 576
BmiI	GGNNCC	2 cut(s)	80, 210
BmrFI	CCNGG	4 cut(s)	134, 374, 437, 580
BmsI	GCATC	1 cut(s)	430
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	2 cut(s)	374, 580
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	246, 435, 579
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 101, 102
BseBI	CCWGG	2 cut(s)	134, 437
BseDI	CCNNGG	3 cut(s)	246, 435, 579
BseGI	GGATG	2 cut(s)	382, 445
BseLI	CCNNNNNNNGG	3 cut(s)	23, 101, 102
BseMII	CTCAG	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	374, 579
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	3 cut(s)	23, 101, 102
BsmAI	GTCTC	2 cut(s)	23, 116
BsmFI	GGGAC	1 cut(s)	316
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	1 cut(s)	653
BspCNI	CTCAG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	80, 210
BspT107I	GGYRCC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	246, 435, 579
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	134, 437
Bst4CI	ACNGT	2 cut(s)	340, 505
Bst6I	CTCTTC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	401, 495
BstDEI	CTNAG	3 cut(s)	20, 264, 426
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	382, 445
BstMAI	GTCTC	2 cut(s)	23, 116
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 490
BstNI	CCWGG	2 cut(s)	134, 437
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	4 cut(s)	132, 372, 435, 578
BstSFI	CTRYAG	1 cut(s)	163
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	382, 445
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	2 cut(s)	17, 239
Cac8I	GCNNGC	2 cut(s)	401, 495
CaiI	CAGNNNCTG	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	243, 576
CpoI	CGGWCCG	1 cut(s)	576
CsiI	ACCWGGT	1 cut(s)	132
Csp6I	GTAC	4 cut(s)	137, 209, 470, 501
CspI	CGGWCCG	1 cut(s)	576
CviAII	CATG	5 cut(s)	247, 389, 473, 494, 620
CviJI	RGCY	7 cut(s)	5, 100, 162, 168, 399, 403, 484
CviKI_1	RGCY	7 cut(s)	5, 100, 162, 168, 399, 403, 484
CviQI	GTAC	4 cut(s)	137, 209, 470, 501
DdeI	CTNAG	3 cut(s)	20, 264, 426
DraI	TTTAAA	1 cut(s)	345
DraIII	CACNNNGTG	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	668
Eco130I	CCWWGG	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	2 cut(s)	243, 576
EcoRI	GAATTC	1 cut(s)	382
EcoRII	CCWGG	2 cut(s)	132, 435
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	5 cut(s)	250, 392, 476, 497, 623
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	5 cut(s)	246, 388, 472, 493, 619
FauNDI	CATATG	1 cut(s)	462
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	389, 452
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	1 cut(s)	6
HapII	CCGG	2 cut(s)	374, 579
Hin1II	CATG	5 cut(s)	250, 392, 476, 497, 623
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	6 cut(s)	46, 203, 355, 445, 571, 616
HpaII	CCGG	2 cut(s)	374, 579
HphI	GGTGA	4 cut(s)	38, 106, 122, 675
Hpy166II	GTNNAC	2 cut(s)	253, 537
Hpy188I	TCNGA	4 cut(s)	45, 360, 576, 591
Hpy188III	TCNNGA	2 cut(s)	88, 673
Hpy8I	GTNNAC	2 cut(s)	253, 537
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	2 cut(s)	340, 505
HpyCH4V	TGCA	6 cut(s)	56, 145, 232, 287, 493, 630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 490
HpyF3I	CTNAG	3 cut(s)	20, 264, 426
Hsp92II	CATG	5 cut(s)	250, 392, 476, 497, 623
KpnI	GGTACC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	457
LweI	GCATC	1 cut(s)	430
MabI	ACCWGGT	1 cut(s)	132
MaeI	CTAG	1 cut(s)	540
MboII	GAAGA	4 cut(s)	111, 181, 316, 577
MfeI	CAATTG	2 cut(s)	57, 293
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	6 cut(s)	57, 214, 293, 382, 421, 514
MlyI	GAGTC	2 cut(s)	55, 212
MmeI	TCCRAC	1 cut(s)	383
MnlI	CCTC	4 cut(s)	95, 127, 459, 525
MseI	TTAA	3 cut(s)	344, 480, 525
MslI	CAYNNNNRTG	1 cut(s)	492
MspI	CCGG	2 cut(s)	374, 579
MspR9I	CCNGG	4 cut(s)	134, 374, 437, 580
MunI	CAATTG	2 cut(s)	57, 293
MvaI	CCWGG	2 cut(s)	134, 437
MwoI	GCNNNNNNNGC	2 cut(s)	229, 490
NciI	CCSGG	2 cut(s)	374, 580
NcoI	CCATGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	462
NlaIII	CATG	5 cut(s)	250, 392, 476, 497, 623
NlaIV	GGNNCC	2 cut(s)	80, 210
NspI	RCATGY	1 cut(s)	497
PaeI	GCATGC	1 cut(s)	497
PfeI	GAWTC	4 cut(s)	355, 445, 571, 616
PflMI	CCANNNNNTGG	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	54, 211
PpsI	GAGTC	2 cut(s)	54, 211
PsiI	TTATAA	1 cut(s)	561
Psp6I	CCWGG	2 cut(s)	132, 435
PspGI	CCWGG	2 cut(s)	132, 435
PspN4I	GGNNCC	2 cut(s)	80, 210
PspPI	GGNCC	2 cut(s)	243, 576
PstNI	CAGNNNCTG	1 cut(s)	49
RsaI	GTAC	4 cut(s)	138, 210, 471, 502
RsaNI	GTAC	4 cut(s)	137, 209, 470, 501
RseI	CAYNNNNRTG	1 cut(s)	492
Rsr2I	CGGWCCG	1 cut(s)	576
RsrII	CGGWCCG	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	344, 480, 525
SatI	GCNGC	1 cut(s)	6
Sau96I	GGNCC	2 cut(s)	243, 576
SchI	GAGTC	2 cut(s)	55, 212
ScrFI	CCNGG	4 cut(s)	134, 374, 437, 580
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	8 cut(s)	87, 102, 119, 138, 401, 453, 536, 688
SexAI	ACCWGGT	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	2 cut(s)	243, 576
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SpeI	ACTAGT	1 cut(s)	539
SphI	GCATGC	1 cut(s)	497
Sse9I	AATT	6 cut(s)	57, 214, 293, 382, 421, 514
SsiI	CCGC	1 cut(s)	653
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	4 cut(s)	132, 372, 435, 578
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	340, 505
TasI	AATT	6 cut(s)	57, 214, 293, 382, 421, 514
TatI	WGTACW	1 cut(s)	500
TfiI	GAWTC	4 cut(s)	355, 445, 571, 616
Tru1I	TTAA	3 cut(s)	344, 480, 525
Tru9I	TTAA	3 cut(s)	344, 480, 525
TscAI	CASTG	2 cut(s)	24, 239
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	587, 608
TspRI	CASTG	2 cut(s)	24, 239
Van91I	CCANNNNNTGG	1 cut(s)	23
VpaK11BI	GGWCC	2 cut(s)	243, 576
XapI	RAATTY	1 cut(s)	382
XceI	RCATGY	1 cut(s)	497
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.