AT5G39610
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011691
Physical Location & Seq
Reverse (-)
15858398 .. 15859911
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39610.1

Sequence Viewer

Length: 858 bp
ATGGATTACGAGGCATCAAGAATCGTCGAAATGGTAGAAGATGAAGAACATATAGATCTACCACCAGGATTCAGATTTCACCCTACTGATGAAGAACTCATAACTCACTACCTCAAACCAAAGGTTTTCAACACTTTCTTCTCTGCTACTGCCATTGGTGAAGTTGATCTCAACAAGATTGAGCCTTGGGACTTACCATGGAAGGCTAAGATGGGAGAAAAAGAATGGTATTTCTTCTGTGTGAGAGACCGGAAATACCCGACCGGTTTAAGGACAAACCGGGCGACAGAAGCCGGTTATTGGAAAGCCACAGGAAAAGACAAAGAGATATTCAAGGGAAAATCACTTGTGGGTATGAAGAAAACTTTGGTTTTCTATAAAGGAAGAGCTCCTAAAGGAGTTAAAACCAATTGGGTTATGCATGAATATCGTTTAGAAGGCAAATATTGTATTGAAAATCTTCCCCAAACAGCTAAGAACGAATGGGTTATATGTCGTGTTTTCCAAAAACGTGCCGATGGTACAAAGGTTCCAATGTCAATGCTTGATCCACACATTAACCGAATGGAACCAGCCGGTTTACCTTCGTTAATGGATTGTTCTCAACGAGACTCCTTCACCGGTTCGTCGTCTCACGTGACCTGCTTCTCCGACCAAGAAACCGAAGACAAAAGACTTGTCCACGAGTCCAAAGACGGTTTTGGTTCTCTGTTTTACTCGGATCCTCTGTTTTTACAAGACAATTATTCGCTAATGAAGCTGTTGCTTGACGGTCAAGAAACTCAATTCTCCGGCAAACCTTTCGACGGTCGTGATTCGTCCGGTACAGAAGAATTGGATTGCGTTTGGAATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007568 GO:0007569 GO:0008150 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044093 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0046677 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:0090398 GO:0090400 GO:0090693 GO:0090696 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900140 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:1904248 GO:1904250 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

285

Amino Acids

32.98

Weight (kDa)

5.74

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 21 - 145 9.4e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011691)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39610
fragaria_vesca FvH4_6g48120
malus_domestica MD09G1053700.v1.1 MD17G1051600.v1.1
prunus_persica Prupe.3G264600_v2.0.a1
pyrus_communis pycom111g04470 pycom17g04870
rosa_chinensis RchiOBHm_Chr2g0167461
rosa_laevigata RLG00000021720
rosa_multiflora Rmu_sc0001206.1_g000039 Rmu_sc0019611.1_g000001
rosa_roxburghii Rroxscaffold_2G00083490
rosa_rugosa Rorug02G0530400
rosa_samantha Rh2AG597500 Rh2BG608900 Rh2CG579800 Rh2DG620100 Rh7BG045200
rosa_wichuraiana Rw2G049720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 650
AclWI GGATC 3 cut(s) 542, 716, 729
AcsI RAATTY 1 cut(s) 850
AcvI CACGTG 1 cut(s) 637
AfaI GTAC 2 cut(s) 523, 826
AfiI CCNNNNNNNGG 3 cut(s) 270, 300, 806
AgeI ACCGGT 2 cut(s) 263, 620
AgsI TTSAA 3 cut(s) 130, 334, 455
AjnI CCWGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 3 cut(s) 389, 473, 760
AluI AGCT 3 cut(s) 389, 473, 760
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 3 cut(s) 240, 603, 636
AlwI GGATC 3 cut(s) 542, 716, 729
ApoI RAATTY 1 cut(s) 850
ArsI GACNNNNNNTTYG 2 cut(s) 663, 695
AsiGI ACCGGT 2 cut(s) 263, 620
Asp700I GAANNNNTTC 1 cut(s) 459
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 3 cut(s) 71, 170, 610
BaeI ACNNNNGTAYC 2 cut(s) 513, 546
BamHI GGATCC 1 cut(s) 721
BanII GRGCYC 1 cut(s) 391
BauI CACGAG 1 cut(s) 683
BbrPI CACGTG 1 cut(s) 637
BbsI GAAGAC 1 cut(s) 672
Bbv12I GWGCWC 1 cut(s) 391
BccI CCATC 2 cut(s) 205, 512
BcgI CGANNNNNNTGC 4 cut(s) 410, 444, 784, 818
BciT130I CCWGG 1 cut(s) 66
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 3 cut(s) 240, 603, 636
BfuAI ACCTGC 1 cut(s) 650
BglII AGATCT 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 66, 281
BmiI GGNNCC 3 cut(s) 531, 570, 723
BmrFI CCNGG 2 cut(s) 66, 281
BmsI GCATC 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 672
BpuMI CCSGG 1 cut(s) 281
BsaAI YACGTR 1 cut(s) 637
BsaI GGTCTC 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 185, 197
BsaWI WCCGGW 4 cut(s) 249, 263, 620, 821
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 300, 806
Bse118I RCCGGY 4 cut(s) 263, 293, 575, 620
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 185, 197
BseLI CCNNNNNNNGG 3 cut(s) 270, 300, 806
Bsh1285I CGRYCG 2 cut(s) 264, 811
BshTI ACCGGT 2 cut(s) 263, 620
BsiEI CGRYCG 2 cut(s) 264, 811
BsiHKAI GWGCWC 1 cut(s) 391
BsiSI CCGG 8 cut(s) 250, 264, 280, 294, 576, 621, 792, 822
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 3 cut(s) 270, 300, 806
BsmAI GTCTC 3 cut(s) 240, 603, 636
BsmBI CGTCTC 1 cut(s) 636
BsmFI GGGAC 1 cut(s) 203
Bso31I GGTCTC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 4 cut(s) 55, 166, 547, 721
Bsp19I CCATGG 1 cut(s) 197
BspLI GGNNCC 3 cut(s) 531, 570, 723
BspMI ACCTGC 1 cut(s) 650
BspPI GGATC 3 cut(s) 542, 716, 729
BspQI GCTCTTC 1 cut(s) 379
BspTNI GGTCTC 1 cut(s) 240
BsrFI RCCGGY 4 cut(s) 263, 293, 575, 620
BssAI RCCGGY 4 cut(s) 263, 293, 575, 620
BssECI CCNNGG 2 cut(s) 185, 197
BssMI GATC 4 cut(s) 55, 166, 547, 721
BssSI CACGAG 1 cut(s) 683
BssT1I CCWWGG 2 cut(s) 185, 197
Bst2BI CACGAG 1 cut(s) 683
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 3 cut(s) 698, 773, 809
Bst6I CTCTTC 1 cut(s) 379
BstBAI YACGTR 1 cut(s) 637
BstDEI CTNAG 2 cut(s) 207, 474
BstDSI CCRYGG 1 cut(s) 197
BstKTI GATC 4 cut(s) 58, 169, 550, 724
BstMAI GTCTC 3 cut(s) 240, 603, 636
BstMBI GATC 4 cut(s) 55, 166, 547, 721
BstMCI CGRYCG 2 cut(s) 264, 811
BstMWI GCNNNNNNNGC 2 cut(s) 290, 757
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 2 cut(s) 64, 279
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 2 cut(s) 55, 721
BstYI RGATCY 2 cut(s) 55, 721
BtgI CCRYGG 1 cut(s) 197
BveI ACCTGC 1 cut(s) 650
Cfr10I RCCGGY 4 cut(s) 263, 293, 575, 620
Csp6I GTAC 2 cut(s) 522, 825
CspAI ACCGGT 2 cut(s) 263, 620
CviAII CATG 2 cut(s) 198, 422
CviJI RGCY 8 cut(s) 184, 206, 293, 308, 389, 473, 575, 760
CviKI_1 RGCY 8 cut(s) 184, 206, 293, 308, 389, 473, 575, 760
CviQI GTAC 2 cut(s) 522, 825
DdeI CTNAG 2 cut(s) 207, 474
DpnI GATC 4 cut(s) 57, 168, 549, 723
DpnII GATC 4 cut(s) 55, 166, 547, 721
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Ecl136II GAGCTC 1 cut(s) 389
Eco130I CCWWGG 2 cut(s) 185, 197
Eco24I GRGCYC 1 cut(s) 391
Eco31I GGTCTC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 389
Eco72I CACGTG 1 cut(s) 637
EcoICRI GAGCTC 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 185, 197
EcoT22I ATGCAT 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 185, 197
Esp3I CGTCTC 1 cut(s) 636
FaeI CATG 2 cut(s) 201, 425
FaqI GGGAC 1 cut(s) 203
FatI CATG 2 cut(s) 197, 421
FriOI GRGCYC 1 cut(s) 391
HapII CCGG 8 cut(s) 250, 264, 280, 294, 576, 621, 792, 822
Hin1II CATG 2 cut(s) 201, 425
HinfI GANTC 5 cut(s) 21, 69, 611, 686, 815
HpaII CCGG 8 cut(s) 250, 264, 280, 294, 576, 621, 792, 822
HphI GGTGA 3 cut(s) 71, 170, 610
Hpy166II GTNNAC 2 cut(s) 581, 682
Hpy188I TCNGA 4 cut(s) 74, 652, 721, 857
Hpy188III TCNNGA 3 cut(s) 18, 776, 812
Hpy8I GTNNAC 2 cut(s) 581, 682
Hpy99I CGWCG 3 cut(s) 29, 631, 809
HpyAV CCTTC 4 cut(s) 196, 431, 594, 625
HpyCH4III ACNGT 3 cut(s) 698, 773, 809
HpyCH4IV ACGT 2 cut(s) 511, 636
HpyCH4V TGCA 1 cut(s) 421
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 757
HpyF3I CTNAG 2 cut(s) 207, 474
HpySE526I ACGT 2 cut(s) 511, 636
Hsp92II CATG 2 cut(s) 201, 425
Kzo9I GATC 4 cut(s) 55, 166, 547, 721
LguI GCTCTTC 1 cut(s) 379
LmnI GCTCC 1 cut(s) 394
LweI GCATC 1 cut(s) 23
MaeII ACGT 2 cut(s) 511, 636
MaeIII GTNAC 1 cut(s) 637
MalI GATC 4 cut(s) 57, 168, 549, 723
MboI GATC 4 cut(s) 55, 166, 547, 721
MfeI CAATTG 1 cut(s) 409
MflI RGATCY 2 cut(s) 55, 721
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 5 cut(s) 409, 742, 785, 833, 850
MlyI GAGTC 2 cut(s) 605, 695
MmeI TCCRAC 1 cut(s) 675
MnlI CCTC 3 cut(s) 4, 122, 735
Mph1103I ATGCAT 1 cut(s) 423
MroXI GAANNNNTTC 1 cut(s) 459
MseI TTAA 4 cut(s) 269, 402, 558, 590
MspI CCGG 8 cut(s) 250, 264, 280, 294, 576, 621, 792, 822
MspR9I CCNGG 2 cut(s) 66, 281
MunI CAATTG 1 cut(s) 409
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 290, 757
NciI CCSGG 1 cut(s) 281
NcoI CCATGG 1 cut(s) 197
NdeII GATC 4 cut(s) 55, 166, 547, 721
NlaIII CATG 2 cut(s) 201, 425
NlaIV GGNNCC 3 cut(s) 531, 570, 723
NmuCI GTSAC 1 cut(s) 637
NsiI ATGCAT 1 cut(s) 423
PciSI GCTCTTC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 3 cut(s) 21, 69, 815
PinAI ACCGGT 2 cut(s) 263, 620
PleI GAGTC 2 cut(s) 605, 694
PmaCI CACGTG 1 cut(s) 637
PmlI CACGTG 1 cut(s) 637
PpsI GAGTC 2 cut(s) 605, 694
Ppu21I YACGTR 1 cut(s) 637
Psp124BI GAGCTC 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 64
PspCI CACGTG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 3 cut(s) 531, 570, 723
PsuI RGATCY 2 cut(s) 55, 721
RsaI GTAC 2 cut(s) 523, 826
RsaNI GTAC 2 cut(s) 522, 825
SacI GAGCTC 1 cut(s) 391
SapI GCTCTTC 1 cut(s) 379
SaqAI TTAA 4 cut(s) 269, 402, 558, 590
Sau3AI GATC 4 cut(s) 55, 166, 547, 721
SchI GAGTC 2 cut(s) 605, 695
ScrFI CCNGG 2 cut(s) 66, 281
SduI GDGCHC 1 cut(s) 391
SfaNI GCATC 1 cut(s) 23
Sse9I AATT 5 cut(s) 409, 742, 785, 833, 850
SspI AATATT 1 cut(s) 446
SstI GAGCTC 1 cut(s) 391
StyD4I CCNGG 2 cut(s) 64, 279
StyI CCWWGG 2 cut(s) 185, 197
TaaI ACNGT 3 cut(s) 698, 773, 809
TaiI ACGT 2 cut(s) 514, 639
TaqI TCGA 2 cut(s) 27, 804
TasI AATT 5 cut(s) 409, 742, 785, 833, 850
TfiI GAWTC 3 cut(s) 21, 69, 815
Tru1I TTAA 4 cut(s) 269, 402, 558, 590
Tru9I TTAA 4 cut(s) 269, 402, 558, 590
TseFI GTSAC 1 cut(s) 637
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 5 cut(s) 57, 105, 371, 438, 770
XapI RAATTY 1 cut(s) 850
XmnI GAANNNNTTC 1 cut(s) 459
Zsp2I ATGCAT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.