pycom111g04470
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0011691
Physical Location & Seq
Forward (+)
2706232 .. 2707489
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g04470.3

Sequence Viewer

Length: 1053 bp
ATGGAAAATACTTCTGGGTTTATTAACGTGGATGAGCAGATGGAACTTCCTCCGGGATTCCGATTTCATCCAACGGATGAAGAGCTCATAAGTCACTACCTCTGCCCCAAAGTTCTTGACAACTTCTTCTGTGCTAAAGCAATTGGTGAGGTGGATTTGAACAAGTGTGAGCCCTGGGATTTGCCTTGGAGGGCAAAAATGGGAGAAAGGGAATGGTACTTCTTCTGTGTGAGGGACAGAAAATACCCAACTGGTCTAAGAACAAACCGGGCAACGGAGGCCGGGTACTGGAAAGCCACAGGCAAAGATAAGGAGATTTACAAGGCAAAAACCCTGGTTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCTCCAAAAGGTGAAAAGACCAACTGGGTGATGCATGAATACAGATTGGACGGCAAAAACTCTGCCTGTAATCTCCCCCAAACAGCAAAGAATGAGTGGGTGATTTGTAGAATTTTCCAAAAGAGTAGCGGTGGGAAGAAGATACATATTTCAGGTTTGGTGAGGCTGAGCCCCTTCGGGAACGAATTGCGCTCTTCTTTATTGCCACCATTAATGGATTCTCCACCCTACAACAGCGACGCTAGAACAACCCCCACCGCCTGCGAAACCTCTTACGTGTCCTGCTTCTCCGATCCACCGGAGGATCAGAAGACTCAGGACGACATTATGGACAGCTTCAACAACAGCAACAACCACCACAACAACGACATTCCTTACGCTTGTTCATCGCCTTCGAATCCCTCATCTGATTTGAACTCTATTTACTCCAACCAAATCACACCAAACATTGGACTTTTGCAGCACCAAAACTCAGTTTTGATGCAGGACGAGTCGTTTATGAGGATGTTGACTGAAAACCAAGCACCAAACTTGAGGCGTAGTGCGAAACTAGAGTTCCCACAGGACGCTGGGCTGAGCATTGATGCTTCCTCAGTGGTTTCAAACAGAGAAATGGCGCAGGATGATCCATCGTATTCTTCCGCTCCTGCAGAATTCGATTGCCTCTGGAATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007568 GO:0007569 GO:0008150 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044093 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0046677 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:0090398 GO:0090400 GO:0090693 GO:0090696 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900140 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:1904248 GO:1904250 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

351

Amino Acids

39.78

Weight (kDa)

5.73

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011691)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39610
fragaria_vesca FvH4_6g48120
malus_domestica MD09G1053700.v1.1 MD17G1051600.v1.1
prunus_persica Prupe.3G264600_v2.0.a1
pyrus_communis pycom111g04470 pycom17g04870
rosa_chinensis RchiOBHm_Chr2g0167461
rosa_laevigata RLG00000021720
rosa_multiflora Rmu_sc0001206.1_g000039 Rmu_sc0019611.1_g000001
rosa_roxburghii Rroxscaffold_2G00083490
rosa_rugosa Rorug02G0530400
rosa_samantha Rh2AG597500 Rh2BG608900 Rh2CG579800 Rh2DG620100 Rh7BG045200
rosa_wichuraiana Rw2G049720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 824
AccBSI CCGCTC 1 cut(s) 1019
AciI CCGC 3 cut(s) 504, 633, 1017
AclWI GGATC 3 cut(s) 662, 687, 995
AcsI RAATTY 2 cut(s) 486, 1028
AfaI GTAC 2 cut(s) 218, 287
AfiI CCNNNNNNNGG 3 cut(s) 274, 288, 824
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 4 cut(s) 160, 715, 790, 978
AjnI CCWGG 2 cut(s) 173, 333
AluBI AGCT 3 cut(s) 85, 377, 711
AluI AGCT 3 cut(s) 85, 377, 711
Alw21I GWGCWC 2 cut(s) 87, 379
AlwI GGATC 3 cut(s) 662, 687, 995
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 835
ApoI RAATTY 2 cut(s) 486, 1028
AseI ATTAAT 1 cut(s) 587
AspLEI GCGC 2 cut(s) 567, 994
AsuC2I CCSGG 3 cut(s) 54, 269, 283
AsuHPI GGTGA 5 cut(s) 158, 398, 415, 487, 547
AsuII TTCGAA 1 cut(s) 770
BanII GRGCYC 4 cut(s) 87, 174, 379, 548
BbsI GAAGAC 1 cut(s) 692
Bbv12I GWGCWC 2 cut(s) 87, 379
BbvI GCAGC 1 cut(s) 847
BccI CCATC 2 cut(s) 34, 1012
BceAI ACGGC 1 cut(s) 442
BciT130I CCWGG 2 cut(s) 175, 335
BcnI CCSGG 3 cut(s) 54, 269, 283
BfaI CTAG 2 cut(s) 618, 926
BfmI CTRYAG 1 cut(s) 1023
BisI GCNGC 1 cut(s) 836
BlpI GCTNAGC 2 cut(s) 542, 950
BlsI GCNGC 1 cut(s) 837
Bme1390I CCNGG 5 cut(s) 54, 175, 269, 283, 335
BmrFI CCNGG 5 cut(s) 54, 175, 269, 283, 335
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 3 cut(s) 396, 846, 949
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 692
Bpu1102I GCTNAGC 2 cut(s) 542, 950
Bpu14I TTCGAA 1 cut(s) 770
BpuEI CTTGAG 1 cut(s) 928
BpuMI CCSGG 3 cut(s) 54, 269, 283
BsaAI YACGTR 1 cut(s) 652
BsaJI CCNNGG 4 cut(s) 173, 174, 185, 333
BsaWI WCCGGW 1 cut(s) 673
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 288, 824
Bse1I ACTGG 3 cut(s) 256, 293, 404
BseBI CCWGG 2 cut(s) 175, 335
BseDI CCNNGG 4 cut(s) 173, 174, 185, 333
BseGI GGATG 5 cut(s) 37, 67, 82, 885, 1003
BseLI CCNNNNNNNGG 3 cut(s) 274, 288, 824
BseMII CTCAG 5 cut(s) 533, 704, 861, 941, 981
BseNI ACTGG 3 cut(s) 256, 293, 404
BseXI GCAGC 1 cut(s) 847
BseYI CCCAGC 1 cut(s) 944
BshFI GGCC 1 cut(s) 281
BsiHKAI GWGCWC 2 cut(s) 87, 379
BsiSI CCGG 4 cut(s) 53, 268, 282, 674
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 3 cut(s) 274, 288, 824
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 281
Bsp119I TTCGAA 1 cut(s) 770
Bsp1286I GDGCHC 4 cut(s) 87, 174, 379, 548
Bsp143I GATC 3 cut(s) 667, 679, 1000
Bsp1720I GCTNAGC 2 cut(s) 542, 950
BspACI CCGC 3 cut(s) 504, 633, 1017
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 5 cut(s) 534, 703, 860, 942, 980
BspMAI CTGCAG 1 cut(s) 1027
BspPI GGATC 3 cut(s) 662, 687, 995
BspQI GCTCTTC 3 cut(s) 75, 367, 574
BspT104I TTCGAA 1 cut(s) 770
BsrBI CCGCTC 1 cut(s) 1019
BsrI ACTGG 3 cut(s) 256, 293, 404
BssECI CCNNGG 4 cut(s) 173, 174, 185, 333
BssMI GATC 3 cut(s) 667, 679, 1000
BssT1I CCWWGG 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 175, 335
Bst6I CTCTTC 3 cut(s) 75, 367, 574
BstBAI YACGTR 1 cut(s) 652
BstBI TTCGAA 1 cut(s) 770
BstC8I GCNNGC 1 cut(s) 637
BstDEI CTNAG 6 cut(s) 257, 542, 690, 847, 950, 967
BstF5I GGATG 5 cut(s) 37, 67, 82, 885, 1003
BstHHI GCGC 2 cut(s) 567, 994
BstKTI GATC 3 cut(s) 670, 682, 1003
BstMBI GATC 3 cut(s) 667, 679, 1000
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 2 cut(s) 175, 335
BstSCI CCNGG 5 cut(s) 52, 173, 267, 281, 333
BstSFI CTRYAG 1 cut(s) 1023
BstV1I GCAGC 1 cut(s) 847
BstV2I GAAGAC 1 cut(s) 692
BsuRI GGCC 1 cut(s) 281
BtgZI GCGATG 1 cut(s) 747
BtsCI GGATG 5 cut(s) 37, 67, 82, 885, 1003
BtsIMutI CAGTG 1 cut(s) 975
Cac8I GCNNGC 1 cut(s) 637
CfoI GCGC 2 cut(s) 567, 994
CseI GACGC 2 cut(s) 623, 950
Csp6I GTAC 2 cut(s) 217, 286
CviAII CATG 1 cut(s) 410
CviJI RGCY 9 cut(s) 85, 172, 281, 296, 377, 541, 546, 711, 949
CviKI_1 RGCY 9 cut(s) 85, 172, 281, 296, 377, 541, 546, 711, 949
CviQI GTAC 2 cut(s) 217, 286
DdeI CTNAG 6 cut(s) 257, 542, 690, 847, 950, 967
DpnI GATC 3 cut(s) 669, 681, 1002
DpnII GATC 3 cut(s) 667, 679, 1000
Eam1104I CTCTTC 3 cut(s) 75, 367, 574
EarI CTCTTC 3 cut(s) 75, 367, 574
Ecl136II GAGCTC 2 cut(s) 85, 377
Eco130I CCWWGG 1 cut(s) 185
Eco24I GRGCYC 4 cut(s) 87, 174, 379, 548
Eco53kI GAGCTC 2 cut(s) 85, 377
EcoICRI GAGCTC 2 cut(s) 85, 377
EcoRI GAATTC 1 cut(s) 1028
EcoRII CCWGG 2 cut(s) 173, 333
EcoT14I CCWWGG 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 411
EcoT38I GRGCYC 4 cut(s) 87, 174, 379, 548
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 1 cut(s) 413
FaiI YATR 5 cut(s) 89, 411, 522, 704, 875
FaqI GGGAC 1 cut(s) 248
FatI CATG 1 cut(s) 409
Fnu4HI GCNGC 1 cut(s) 836
FokI GGATG 5 cut(s) 44, 54, 89, 892, 1010
FriOI GRGCYC 4 cut(s) 87, 174, 379, 548
Fsp4HI GCNGC 1 cut(s) 836
FspBI CTAG 2 cut(s) 618, 926
GlaI GCGC 2 cut(s) 566, 993
GluI GCNGC 1 cut(s) 836
GsaI CCCAGC 1 cut(s) 948
HaeIII GGCC 1 cut(s) 281
HapII CCGG 4 cut(s) 53, 268, 282, 674
HgaI GACGC 2 cut(s) 623, 950
HhaI GCGC 2 cut(s) 567, 994
Hin1II CATG 1 cut(s) 413
Hin6I GCGC 2 cut(s) 565, 992
HinP1I GCGC 2 cut(s) 565, 992
HincII GTYRAC 1 cut(s) 885
HindII GTYRAC 1 cut(s) 885
HinfI GANTC 5 cut(s) 57, 593, 688, 772, 866
HpaII CCGG 4 cut(s) 53, 268, 282, 674
HphI GGTGA 5 cut(s) 158, 398, 415, 487, 547
Hpy166II GTNNAC 1 cut(s) 885
Hpy188I TCNGA 4 cut(s) 62, 667, 684, 784
Hpy188III TCNNGA 4 cut(s) 116, 553, 692, 1042
Hpy8I GTNNAC 1 cut(s) 885
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 2 cut(s) 559, 777
HpyCH4IV ACGT 2 cut(s) 27, 651
HpyCH4V TGCA 4 cut(s) 409, 835, 859, 1025
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 6 cut(s) 257, 542, 690, 847, 950, 967
HpySE526I ACGT 2 cut(s) 27, 651
Hsp92II CATG 1 cut(s) 413
HspAI GCGC 2 cut(s) 565, 992
Kzo9I GATC 3 cut(s) 667, 679, 1000
LguI GCTCTTC 3 cut(s) 75, 367, 574
LmnI GCTCC 2 cut(s) 382, 1024
Lsp1109I GCAGC 1 cut(s) 847
LweI GCATC 3 cut(s) 396, 846, 949
MaeI CTAG 2 cut(s) 618, 926
MaeII ACGT 2 cut(s) 27, 651
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 669, 681, 1002
MbiI CCGCTC 1 cut(s) 1019
MboI GATC 3 cut(s) 667, 679, 1000
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 4 cut(s) 87, 174, 379, 548
MluCI AATT 5 cut(s) 141, 486, 560, 1028, 1045
MlyI GAGTC 2 cut(s) 682, 875
MmeI TCCRAC 3 cut(s) 95, 319, 828
Mph1103I ATGCAT 1 cut(s) 411
MseI TTAA 2 cut(s) 24, 587
MspI CCGG 4 cut(s) 53, 268, 282, 674
MspR9I CCNGG 5 cut(s) 54, 175, 269, 283, 335
MunI CAATTG 1 cut(s) 141
MvaI CCWGG 2 cut(s) 175, 335
MwoI GCNNNNNNNGC 1 cut(s) 278
NciI CCSGG 3 cut(s) 54, 269, 283
NdeII GATC 3 cut(s) 667, 679, 1000
NlaIII CATG 1 cut(s) 413
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 411
NspV TTCGAA 1 cut(s) 770
PasI CCCWGGG 1 cut(s) 174
PciSI GCTCTTC 3 cut(s) 75, 367, 574
PfeI GAWTC 3 cut(s) 57, 593, 772
PflMI CCANNNNNTGG 1 cut(s) 824
PfoI TCCNGGA 1 cut(s) 52
PkrI GCNGC 1 cut(s) 837
PleI GAGTC 2 cut(s) 682, 874
PpsI GAGTC 2 cut(s) 682, 874
Ppu21I YACGTR 1 cut(s) 652
PshBI ATTAAT 1 cut(s) 587
Psp124BI GAGCTC 2 cut(s) 87, 379
Psp6I CCWGG 2 cut(s) 173, 333
PspFI CCCAGC 1 cut(s) 944
PspGI CCWGG 2 cut(s) 173, 333
PsrI GAACNNNNNNTAC 2 cut(s) 782, 814
PstI CTGCAG 1 cut(s) 1027
RsaI GTAC 2 cut(s) 218, 287
RsaNI GTAC 2 cut(s) 217, 286
SacI GAGCTC 2 cut(s) 87, 379
SapI GCTCTTC 3 cut(s) 75, 367, 574
SaqAI TTAA 2 cut(s) 24, 587
SatI GCNGC 1 cut(s) 836
Sau3AI GATC 3 cut(s) 667, 679, 1000
SchI GAGTC 2 cut(s) 682, 875
ScrFI CCNGG 5 cut(s) 54, 175, 269, 283, 335
SduI GDGCHC 4 cut(s) 87, 174, 379, 548
SfaNI GCATC 3 cut(s) 396, 846, 949
SfcI CTRYAG 1 cut(s) 1023
SfuI TTCGAA 1 cut(s) 770
SmlI CTYRAG 1 cut(s) 907
SmoI CTYRAG 1 cut(s) 907
Sse9I AATT 5 cut(s) 141, 486, 560, 1028, 1045
SsiI CCGC 3 cut(s) 504, 633, 1017
SspMI CTAG 2 cut(s) 618, 926
SstI GAGCTC 2 cut(s) 87, 379
StyD4I CCNGG 5 cut(s) 52, 173, 267, 281, 333
StyI CCWWGG 1 cut(s) 185
TaiI ACGT 2 cut(s) 30, 654
TaqI TCGA 2 cut(s) 770, 1032
TasI AATT 5 cut(s) 141, 486, 560, 1028, 1045
TfiI GAWTC 3 cut(s) 57, 593, 772
Tru1I TTAA 2 cut(s) 24, 587
Tru9I TTAA 2 cut(s) 24, 587
TscAI CASTG 1 cut(s) 975
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 835
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 5 cut(s) 56, 93, 359, 426, 750
TspGWI ACGGA 2 cut(s) 89, 290
TspRI CASTG 1 cut(s) 975
Van91I CCANNNNNTGG 1 cut(s) 824
VspI ATTAAT 1 cut(s) 587
XapI RAATTY 2 cut(s) 486, 1028
XspI CTAG 2 cut(s) 618, 926
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.