Rh2BG608900
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011691
Physical Location & Seq
Reverse (-)
83040485 .. 83041060
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG608900.1

Sequence Viewer

Length: 576 bp
ATGGTTTCGTATGGTTTTCAGAATGAGTGGGTGATTTGCAGAATTTTCCAAAAGTGTAGTGGTGGGAAGAAAACTCATATTTCGGGGTTGGTGAGGGAGAGCCCTTTCGGAAACGAATTCCGCCCTTCTTTCCTGCCACCACTAATGGATTCTCCACCCTACAACAACAGTGACACAAGAACCACCACCGTCGGTGAAACATCGCATGTGTCCTGCTTCTCCGATGCAATGGAGGATCAGAAAACCCAGGATGACATTATCGACAGCTTCAACAACAACAACAATATCAGCAGCAGCAGCAACAACAACAACAACAGTCATCTGTTAGCTTCTTCATCCTCATTTCCGTTCAAGCCCTCGGTGCAGAACTCTTACTTCTCCGACCAAATCGCACCAAACACCGGAAATATGCAGTACCCGGACTCTGGTTTTATGCAAGACCAGTCTATTATGAGGTTGTTGACTGAGCCTCAAGCTCCAAGCTTGAGGCGCAGCTCATCAAATTATTTGGGGGGTCAAGATGTTCCATCATACTCAGCTGCTCCAATAGAGTTTGATTCCATCTGGAATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007568 GO:0007569 GO:0008150 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044093 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0046677 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:0090398 GO:0090400 GO:0090693 GO:0090696 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900140 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:1904248 GO:1904250 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

191

Amino Acids

21.3

Weight (kDa)

4.78

Isoelectric Point (pI)

61.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011691)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39610
fragaria_vesca FvH4_6g48120
malus_domestica MD09G1053700.v1.1 MD17G1051600.v1.1
prunus_persica Prupe.3G264600_v2.0.a1
pyrus_communis pycom111g04470 pycom17g04870
rosa_chinensis RchiOBHm_Chr2g0167461
rosa_laevigata RLG00000021720
rosa_multiflora Rmu_sc0001206.1_g000039 Rmu_sc0019611.1_g000001
rosa_roxburghii Rroxscaffold_2G00083490
rosa_rugosa Rorug02G0530400
rosa_samantha Rh2AG597500 Rh2BG608900 Rh2CG579800 Rh2DG620100 Rh7BG045200
rosa_wichuraiana Rw2G049720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 121
AclWI GGATC 1 cut(s) 243
AcsI RAATTY 2 cut(s) 42, 116
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 2 cut(s) 401, 425
AgsI TTSAA 2 cut(s) 271, 352
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 6 cut(s) 267, 329, 476, 483, 495, 539
AluI AGCT 6 cut(s) 267, 329, 476, 483, 495, 539
AlwI GGATC 1 cut(s) 243
ApeKI GCWGC 5 cut(s) 291, 294, 297, 492, 539
ApoI RAATTY 2 cut(s) 42, 116
AspLEI GCGC 1 cut(s) 492
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 3 cut(s) 43, 103, 206
BanII GRGCYC 1 cut(s) 104
BbvI GCAGC 5 cut(s) 303, 306, 309, 504, 526
BccI CCATC 2 cut(s) 535, 569
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 1 cut(s) 419
BisI GCNGC 5 cut(s) 292, 295, 298, 493, 540
BlsI GCNGC 5 cut(s) 293, 296, 299, 494, 541
Bme1390I CCNGG 2 cut(s) 248, 419
BmrFI CCNGG 2 cut(s) 248, 419
BmsI GCATC 1 cut(s) 214
BpuEI CTTGAG 2 cut(s) 456, 505
BpuMI CCSGG 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 246, 357
BsaWI WCCGGW 1 cut(s) 401
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 425
Bse1I ACTGG 1 cut(s) 442
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 246, 357
BseGI GGATG 2 cut(s) 256, 335
BseLI CCNNNNNNNGG 2 cut(s) 401, 425
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 2 cut(s) 456, 549
BseNI ACTGG 1 cut(s) 442
BseXI GCAGC 5 cut(s) 303, 306, 309, 504, 526
BsgI GTGCAG 1 cut(s) 383
BsiSI CCGG 2 cut(s) 402, 419
BslI CCNNNNNNNGG 2 cut(s) 401, 425
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 1 cut(s) 121
BspCNI CTCAG 2 cut(s) 457, 548
BspPI GGATC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 246, 357
BssMI GATC 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 3 cut(s) 170, 190, 317
BstDEI CTNAG 2 cut(s) 465, 535
BstF5I GGATG 2 cut(s) 256, 335
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 3 cut(s) 297, 361, 489
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 246, 417
BstV1I GCAGC 5 cut(s) 303, 306, 309, 504, 526
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 2 cut(s) 256, 335
BtsIMutI CAGTG 1 cut(s) 175
CfoI GCGC 1 cut(s) 492
Csp6I GTAC 1 cut(s) 415
CviAII CATG 1 cut(s) 206
CviJI RGCY 9 cut(s) 102, 267, 329, 355, 469, 476, 483, 495, 539
CviKI_1 RGCY 9 cut(s) 102, 267, 329, 355, 469, 476, 483, 495, 539
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 2 cut(s) 465, 535
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
EciI GGCGGA 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 104
FaeI CATG 1 cut(s) 209
FaiI YATR 7 cut(s) 12, 78, 207, 410, 434, 452, 532
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 5 cut(s) 292, 295, 298, 493, 540
FokI GGATG 2 cut(s) 263, 322
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 5 cut(s) 292, 295, 298, 493, 540
GlaI GCGC 1 cut(s) 491
GluI GCNGC 5 cut(s) 292, 295, 298, 493, 540
HapII CCGG 2 cut(s) 402, 419
HhaI GCGC 1 cut(s) 492
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HindIII AAGCTT 1 cut(s) 481
HinfI GANTC 3 cut(s) 149, 422, 557
HpaII CCGG 2 cut(s) 402, 419
HphI GGTGA 3 cut(s) 43, 103, 206
Hpy166II GTNNAC 1 cut(s) 462
Hpy188I TCNGA 5 cut(s) 21, 110, 223, 240, 382
Hpy188III TCNNGA 2 cut(s) 518, 565
Hpy8I GTNNAC 1 cut(s) 462
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 3 cut(s) 170, 190, 317
HpyCH4V TGCA 5 cut(s) 39, 227, 364, 412, 436
HpyF10VI GCNNNNNNNGC 3 cut(s) 297, 361, 489
HpyF3I CTNAG 2 cut(s) 465, 535
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 490
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 2 cut(s) 481, 547
LpnPI CCDG 9 cut(s) 146, 226, 233, 260, 411, 415, 432, 455, 550
Lsp1109I GCAGC 5 cut(s) 303, 306, 309, 504, 526
LweI GCATC 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 2 cut(s) 79, 324
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 4 cut(s) 42, 116, 502, 568
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 7 cut(s) 87, 226, 349, 367, 447, 480, 480
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 2 cut(s) 402, 419
MspR9I CCNGG 2 cut(s) 248, 419
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 3 cut(s) 297, 361, 489
NciI CCSGG 1 cut(s) 419
NdeII GATC 1 cut(s) 235
NlaIII CATG 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 170
NspI RCATGY 1 cut(s) 209
PfeI GAWTC 2 cut(s) 149, 557
PkrI GCNGC 5 cut(s) 293, 296, 299, 494, 541
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SatI GCNGC 5 cut(s) 292, 295, 298, 493, 540
Sau3AI GATC 1 cut(s) 235
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 248, 419
SduI GDGCHC 1 cut(s) 104
SetI ASST 7 cut(s) 269, 331, 458, 478, 485, 497, 541
SfaNI GCATC 1 cut(s) 214
SmlI CTYRAG 2 cut(s) 471, 484
SmoI CTYRAG 2 cut(s) 471, 484
Sse9I AATT 4 cut(s) 42, 116, 502, 568
SsiI CCGC 1 cut(s) 121
StyD4I CCNGG 2 cut(s) 246, 417
TaaI ACNGT 3 cut(s) 170, 190, 317
TaqI TCGA 1 cut(s) 261
TasI AATT 4 cut(s) 42, 116, 502, 568
TfiI GAWTC 2 cut(s) 149, 557
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 5 cut(s) 291, 294, 297, 492, 539
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 1 cut(s) 336
TspRI CASTG 1 cut(s) 175
XapI RAATTY 2 cut(s) 42, 116
XceI RCATGY 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.