MD17G1051600.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0011691
Physical Location & Seq
Forward (+)
4033937 .. 4035671
1735 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1051600.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGGAAAATACTTCTGGGTTTATTATGGAAGATGAGCAGATGGAACTTCCTCCGGGATTCCGATTTCATCCGACGGATGAAGAGCTCATAAGTCACTACCTGTCCCCCAAAGTTCTTGACAACTTCTTCTGTGCAAGAGCAATTGGCGAGGTGGATTTGAACAAGTGTGAGCCTTGGGATTTGCCTTGGAAGGCAAAAATGGGAGAAAGGGAATGGTACTTCTTCTGTGTGAAAGACAGAAAATACCCAACTGGTCTGAGAACAAACCGGGCAACGGAGGCCGGGTACTGGAAAGCCACAGGCAAAGATAAGGAGATTTACAAGGCCAAAACCCTGGTTGGAATGAAGAAAACTCTGGTTTTCTACGAAGGAAGAGCCCCAAAAGGTGTGAAGACCAATTGGGTCATGCATGAATACAGATTGGAGGGCGAAAGCTCTGCCCATAATCTCCCCAAAACTACGAAGAATGAGTGGGTGATTTGCAGAATTTTCCAAAAGAGTAGTGGTGGGAAGAAGACTCATATTTCAGGGTTGCTGCGGCCGAGCCCCTTCGGGAACGAATTGCGCTCTTCTTTACTCCCGCCATTAATGGATTCTCCAGCCTACAACAGCGACGCTAGAACAACAACCACCGCCTGCGAAACCTCTCACGTGTCCTGCTTTTCTGATCCAGCGGAGGATCAGAAGACTGAGGACGACATTATGGACAGCTTCAACAACAGCAACAACCACCACCACCACAACAACATTCATTTCGCTTCTTCATCGCGTTCTAATCCCTCTGCTCATTTGAACACTTTTTATTCCAACCAAATCACACCAAACATTGGGCTATTGCAGCACCAAAACTCGGTTTTGATGCTGGACCAGTCCTTATCGCGGATGTTAGTTGAAAACCAAGCACCAAACTTGAGGCGTAGTGCGAAAATAGAGTTCTCACCGGACACAGGGCTGAGCATTGATGCTTCCTCAGTGGTTTCAAACAGGGAAATGGTACAGGACGATCCATCGTACTCGTCCGCTCCGATAGAACTCGATGGCCTCTGGTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007568 GO:0007569 GO:0008150 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044093 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0046677 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:0090398 GO:0090400 GO:0090693 GO:0090696 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900140 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:1904248 GO:1904250 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

352

Amino Acids

39.93

Weight (kDa)

6.12

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 141 1.2e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011691)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39610
fragaria_vesca FvH4_6g48120
malus_domestica MD09G1053700.v1.1 MD17G1051600.v1.1
prunus_persica Prupe.3G264600_v2.0.a1
pyrus_communis pycom111g04470 pycom17g04870
rosa_chinensis RchiOBHm_Chr2g0167461
rosa_laevigata RLG00000021720
rosa_multiflora Rmu_sc0001206.1_g000039 Rmu_sc0019611.1_g000001
rosa_roxburghii Rroxscaffold_2G00083490
rosa_rugosa Rorug02G0530400
rosa_samantha Rh2AG597500 Rh2BG608900 Rh2CG579800 Rh2DG620100 Rh7BG045200
rosa_wichuraiana Rw2G049720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 827
AccBSI CCGCTC 1 cut(s) 1022
AccII CGCG 2 cut(s) 769, 880
AciI CCGC 6 cut(s) 538, 581, 633, 674, 880, 1020
AclWI GGATC 3 cut(s) 662, 687, 998
AcoI YGGCCR 1 cut(s) 539
AcsI RAATTY 1 cut(s) 486
AcvI CACGTG 1 cut(s) 652
AfaI GTAC 4 cut(s) 218, 287, 996, 1013
AfiI CCNNNNNNNGG 6 cut(s) 274, 288, 827, 850, 879, 947
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 5 cut(s) 160, 715, 793, 893, 981
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 3 cut(s) 85, 435, 711
AluI AGCT 3 cut(s) 85, 435, 711
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 3 cut(s) 662, 687, 998
AoxI GGCC 4 cut(s) 279, 324, 539, 1039
ApeKI GCWGC 2 cut(s) 535, 838
ApoI RAATTY 1 cut(s) 486
AseI ATTAAT 1 cut(s) 587
AspLEI GCGC 1 cut(s) 567
AspS9I GGNCC 1 cut(s) 865
AsuC2I CCSGG 3 cut(s) 54, 269, 283
AsuHPI GGTGA 2 cut(s) 487, 930
AvaII GGWCC 1 cut(s) 865
BanII GRGCYC 3 cut(s) 87, 379, 548
BbrPI CACGTG 1 cut(s) 652
BbsI GAAGAC 3 cut(s) 398, 521, 692
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 522, 850
BccI CCATC 3 cut(s) 34, 1015, 1031
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BciT130I CCWGG 1 cut(s) 335
BcnI CCSGG 3 cut(s) 54, 269, 283
BfaI CTAG 1 cut(s) 618
BisI GCNGC 3 cut(s) 536, 539, 839
BlpI GCTNAGC 1 cut(s) 953
BlsI GCNGC 3 cut(s) 537, 540, 840
Bme1390I CCNGG 4 cut(s) 54, 269, 283, 335
Bme18I GGWCC 1 cut(s) 865
BmgT120I GGNCC 1 cut(s) 865
BmrFI CCNGG 4 cut(s) 54, 269, 283, 335
BmsI GCATC 2 cut(s) 849, 952
BpiI GAAGAC 3 cut(s) 398, 521, 692
BpmI CTGGAG 1 cut(s) 582
Bpu1102I GCTNAGC 1 cut(s) 953
BpuEI CTTGAG 1 cut(s) 931
BpuMI CCSGG 3 cut(s) 54, 269, 283
BsaAI YACGTR 1 cut(s) 652
BsaJI CCNNGG 3 cut(s) 173, 185, 333
BsaWI WCCGGW 1 cut(s) 940
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 6 cut(s) 274, 288, 827, 850, 879, 947
Bse1I ACTGG 3 cut(s) 256, 293, 868
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 3 cut(s) 173, 185, 333
BseGI GGATG 3 cut(s) 67, 82, 888
BseLI CCNNNNNNNGG 6 cut(s) 274, 288, 827, 850, 879, 947
BseMII CTCAG 4 cut(s) 248, 681, 944, 984
BseNI ACTGG 3 cut(s) 256, 293, 868
BseX3I CGGCCG 1 cut(s) 539
BseXI GCAGC 2 cut(s) 522, 850
Bsh1236I CGCG 2 cut(s) 769, 880
Bsh1285I CGRYCG 1 cut(s) 542
BshFI GGCC 4 cut(s) 281, 326, 541, 1041
BsiEI CGRYCG 1 cut(s) 542
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 4 cut(s) 53, 268, 282, 941
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 6 cut(s) 274, 288, 827, 850, 879, 947
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 4 cut(s) 281, 326, 541, 1041
Bsp1286I GDGCHC 3 cut(s) 87, 379, 548
Bsp143I GATC 3 cut(s) 667, 679, 1003
Bsp1720I GCTNAGC 1 cut(s) 953
BspACI CCGC 6 cut(s) 538, 581, 633, 674, 880, 1020
BspANI GGCC 4 cut(s) 281, 326, 541, 1041
BspCNI CTCAG 4 cut(s) 249, 682, 945, 983
BspFNI CGCG 2 cut(s) 769, 880
BspPI GGATC 3 cut(s) 662, 687, 998
BspQI GCTCTTC 3 cut(s) 75, 367, 574
BsrBI CCGCTC 1 cut(s) 1022
BsrI ACTGG 3 cut(s) 256, 293, 868
BssECI CCNNGG 3 cut(s) 173, 185, 333
BssMI GATC 3 cut(s) 667, 679, 1003
BssT1I CCWWGG 2 cut(s) 173, 185
Bst2UI CCWGG 1 cut(s) 335
Bst6I CTCTTC 3 cut(s) 75, 367, 574
BstBAI YACGTR 1 cut(s) 652
BstC8I GCNNGC 1 cut(s) 637
BstDEI CTNAG 4 cut(s) 257, 690, 953, 970
BstF5I GGATG 3 cut(s) 67, 82, 888
BstFNI CGCG 2 cut(s) 769, 880
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 3 cut(s) 670, 682, 1006
BstMBI GATC 3 cut(s) 667, 679, 1003
BstMCI CGRYCG 1 cut(s) 542
BstMWI GCNNNNNNNGC 2 cut(s) 278, 838
BstNI CCWGG 1 cut(s) 335
BstSCI CCNGG 4 cut(s) 52, 267, 281, 333
BstUI CGCG 2 cut(s) 769, 880
BstV1I GCAGC 2 cut(s) 522, 850
BstV2I GAAGAC 3 cut(s) 398, 521, 692
BstXI CCANNNNNNTGG 1 cut(s) 334
BstZI CGGCCG 1 cut(s) 539
BsuRI GGCC 4 cut(s) 281, 326, 541, 1041
BtgZI GCGATG 1 cut(s) 750
BtsCI GGATG 3 cut(s) 67, 82, 888
BtsIMutI CAGTG 1 cut(s) 978
Cac8I GCNNGC 1 cut(s) 637
CfoI GCGC 1 cut(s) 567
Cfr13I GGNCC 1 cut(s) 865
CseI GACGC 1 cut(s) 623
Csp6I GTAC 4 cut(s) 217, 286, 995, 1012
CviAII CATG 2 cut(s) 406, 410
CviQI GTAC 4 cut(s) 217, 286, 995, 1012
DdeI CTNAG 4 cut(s) 257, 690, 953, 970
DpnI GATC 3 cut(s) 669, 681, 1005
DpnII GATC 3 cut(s) 667, 679, 1003
EaeI YGGCCR 1 cut(s) 539
EagI CGGCCG 1 cut(s) 539
Eam1104I CTCTTC 3 cut(s) 75, 367, 574
EarI CTCTTC 3 cut(s) 75, 367, 574
Ecl136II GAGCTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 539
Eco130I CCWWGG 2 cut(s) 173, 185
Eco24I GRGCYC 3 cut(s) 87, 379, 548
Eco47I GGWCC 1 cut(s) 865
Eco52I CGGCCG 1 cut(s) 539
Eco53kI GAGCTC 1 cut(s) 85
Eco72I CACGTG 1 cut(s) 652
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 173, 185
EcoT22I ATGCAT 1 cut(s) 411
EcoT38I GRGCYC 3 cut(s) 87, 379, 548
ErhI CCWWGG 2 cut(s) 173, 185
FaeI CATG 2 cut(s) 409, 413
FaiI YATR 7 cut(s) 26, 89, 407, 411, 444, 522, 704
FaqI GGGAC 1 cut(s) 88
FatI CATG 2 cut(s) 405, 409
FauI CCCGC 1 cut(s) 588
Fnu4HI GCNGC 3 cut(s) 536, 539, 839
FokI GGATG 3 cut(s) 54, 89, 895
FriOI GRGCYC 3 cut(s) 87, 379, 548
Fsp4HI GCNGC 3 cut(s) 536, 539, 839
FspBI CTAG 1 cut(s) 618
GlaI GCGC 1 cut(s) 566
GluI GCNGC 3 cut(s) 536, 539, 839
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 4 cut(s) 281, 326, 541, 1041
HapII CCGG 4 cut(s) 53, 268, 282, 941
HgaI GACGC 1 cut(s) 623
HhaI GCGC 1 cut(s) 567
Hin1II CATG 2 cut(s) 409, 413
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HinfI GANTC 3 cut(s) 57, 517, 593
HpaII CCGG 4 cut(s) 53, 268, 282, 941
HphI GGTGA 2 cut(s) 487, 930
Hpy188I TCNGA 6 cut(s) 62, 72, 258, 667, 684, 1026
Hpy188III TCNNGA 2 cut(s) 116, 553
Hpy99I CGWCG 2 cut(s) 76, 617
HpyAV CCTTC 3 cut(s) 184, 362, 559
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 4 cut(s) 134, 409, 483, 838
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 838
HpyF3I CTNAG 4 cut(s) 257, 690, 953, 970
HpySE526I ACGT 1 cut(s) 651
Hsp92II CATG 2 cut(s) 409, 413
HspAI GCGC 1 cut(s) 565
Kzo9I GATC 3 cut(s) 667, 679, 1003
LguI GCTCTTC 3 cut(s) 75, 367, 574
LmnI GCTCC 1 cut(s) 1027
Lsp1109I GCAGC 2 cut(s) 522, 850
LweI GCATC 2 cut(s) 849, 952
MaeI CTAG 1 cut(s) 618
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 669, 681, 1005
MbiI CCGCTC 1 cut(s) 1022
MboI GATC 3 cut(s) 667, 679, 1003
MfeI CAATTG 2 cut(s) 141, 397
MhlI GDGCHC 3 cut(s) 87, 379, 548
MluCI AATT 4 cut(s) 141, 397, 486, 560
MlyI GAGTC 1 cut(s) 511
MmeI TCCRAC 3 cut(s) 95, 319, 831
Mph1103I ATGCAT 1 cut(s) 411
MseI TTAA 1 cut(s) 587
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 4 cut(s) 53, 268, 282, 941
MspR9I CCNGG 4 cut(s) 54, 269, 283, 335
MunI CAATTG 2 cut(s) 141, 397
MvaI CCWGG 1 cut(s) 335
MvnI CGCG 2 cut(s) 769, 880
MwoI GCNNNNNNNGC 2 cut(s) 278, 838
NciI CCSGG 3 cut(s) 54, 269, 283
NdeII GATC 3 cut(s) 667, 679, 1003
NlaIII CATG 2 cut(s) 409, 413
NmeAIII GCCGAG 1 cut(s) 567
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 411
PciSI GCTCTTC 3 cut(s) 75, 367, 574
PcsI WCGNNNNNNNCGW 1 cut(s) 1022
PfeI GAWTC 2 cut(s) 57, 593
PflMI CCANNNNNTGG 1 cut(s) 827
PfoI TCCNGGA 1 cut(s) 52
PkrI GCNGC 3 cut(s) 537, 540, 840
PleI GAGTC 1 cut(s) 511
PmaCI CACGTG 1 cut(s) 652
PmlI CACGTG 1 cut(s) 652
PpsI GAGTC 1 cut(s) 511
Ppu21I YACGTR 1 cut(s) 652
PshBI ATTAAT 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 333
PspCI CACGTG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 333
PspPI GGNCC 1 cut(s) 865
RsaI GTAC 4 cut(s) 218, 287, 996, 1013
RsaNI GTAC 4 cut(s) 217, 286, 995, 1012
SacI GAGCTC 1 cut(s) 87
SapI GCTCTTC 3 cut(s) 75, 367, 574
SaqAI TTAA 1 cut(s) 587
SatI GCNGC 3 cut(s) 536, 539, 839
Sau3AI GATC 3 cut(s) 667, 679, 1003
Sau96I GGNCC 1 cut(s) 865
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 4 cut(s) 54, 269, 283, 335
SduI GDGCHC 3 cut(s) 87, 379, 548
SetI ASST 8 cut(s) 87, 102, 153, 388, 437, 647, 654, 713
SfaNI GCATC 2 cut(s) 849, 952
SinI GGWCC 1 cut(s) 865
SmlI CTYRAG 1 cut(s) 910
SmoI CTYRAG 1 cut(s) 910
Sse9I AATT 4 cut(s) 141, 397, 486, 560
SsiI CCGC 6 cut(s) 538, 581, 633, 674, 880, 1020
SspMI CTAG 1 cut(s) 618
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 52, 267, 281, 333
StyI CCWWGG 2 cut(s) 173, 185
TaiI ACGT 1 cut(s) 654
TaqI TCGA 1 cut(s) 1035
TasI AATT 4 cut(s) 141, 397, 486, 560
TauI GCSGC 1 cut(s) 541
TfiI GAWTC 2 cut(s) 57, 593
Tru1I TTAA 1 cut(s) 587
Tru9I TTAA 1 cut(s) 587
TscAI CASTG 1 cut(s) 978
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 2 cut(s) 535, 838
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 6 cut(s) 56, 93, 359, 426, 740, 753
TspGWI ACGGA 2 cut(s) 89, 290
TspRI CASTG 1 cut(s) 978
Van91I CCANNNNNTGG 1 cut(s) 827
VpaK11BI GGWCC 1 cut(s) 865
VspI ATTAAT 1 cut(s) 587
XapI RAATTY 1 cut(s) 486
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XspI CTAG 1 cut(s) 618
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.