FvH4_6g48120
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011691
Physical Location & Seq
Reverse (-)
36301058 .. 36302827
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48120.t1

Sequence Viewer

Length: 1014 bp
ATGGAAAACGTTTCTGTGTTTATCAACGAAGATGAGCAGATGGAGTTGCCTCCTGGATTCCGATTTCACCCGACGGATGAAGAACTCATAAGCCACTACCTTTCCCCGAAGGTGCTTGACAGTGTCTTCACCGCTAGAGCTATTGGGGAGGTGGATTTGAACAAGTGTGAGCCTTGGGATTTGCCTTGGAGGGCTAAAATGGGAGAAAAGGAATGGTACTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTTTAAGAACTAACCGGGCGACTGAAGCTGGGTACTGGAAAGCCACAGGCAAAGACAAGGAGATTTACAAGGCCAAAGTCCTTGTTGGAATGAAGAAGACTCTGGTTTTCTACAAAGGAAGGGCTCCCAAGGGTGAAAAGACCAACTGGGTCATGCATGAGTACAGATTGGAAGGCAAATACTCAGCCTATAATCTCCCGAAAACAGCCAAGAATGAGTGGGTGATTTGCAGGATTTTCCAAAAGTGCAGTGGTGGGAAGAAAACTCATATTTCGGGGTTGGTGAGGGAGAGCCCTTACGGAAATGATCAATTCCGCCCTTCTTTACTGCCACCATTAATGGATTCACCATCCTACAACAACAGTGACACAAGAACCACCACCGTAGGCTGCGAAACATCGCATGTGTCCTGCTTCTCCGATCCAATGGAGGATCAGAAAGCCCAGGATGACATTATCGACAGCTTCAACAACAACAACAACATGAGCAGCACCAGCAACAATCATCTGTTAGCTTCTTCATCTTCATTTCCGTTCAAGTCCTCGGTTCAGAACTCTCACTTCTCCAACCAAATCCCACCGAACACCGGAAATATGCAGTACCCGGATTCTGGTTTTATGCAGGATCAGTCTATTATGAGGTTGCTGACTGAGCCTCAAGCTCCAAGCTTAAAGCGCAATTCATCAAATTATTTGGGGGGTCAAGATGTTCCGTCATACTCAGCTGCTCCTATGGACTTTGATTCCATCTGGAATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007568 GO:0007569 GO:0008150 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044093 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0046677 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:0090398 GO:0090400 GO:0090693 GO:0090696 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900140 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:1904248 GO:1904250 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

338

Amino Acids

38.43

Weight (kDa)

6.67

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 141 3.4e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011691)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39610
fragaria_vesca FvH4_6g48120
malus_domestica MD09G1053700.v1.1 MD17G1051600.v1.1
prunus_persica Prupe.3G264600_v2.0.a1
pyrus_communis pycom111g04470 pycom17g04870
rosa_chinensis RchiOBHm_Chr2g0167461
rosa_laevigata RLG00000021720
rosa_multiflora Rmu_sc0001206.1_g000039 Rmu_sc0019611.1_g000001
rosa_roxburghii Rroxscaffold_2G00083490
rosa_rugosa Rorug02G0530400
rosa_samantha Rh2AG597500 Rh2BG608900 Rh2CG579800 Rh2DG620100 Rh7BG045200
rosa_wichuraiana Rw2G049720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 132, 568
AclI AACGTT 1 cut(s) 9
AclWI GGATC 3 cut(s) 668, 693, 885
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 4 cut(s) 218, 287, 416, 854
AfiI CCNNNNNNNGG 2 cut(s) 839, 863
AgsI TTSAA 3 cut(s) 160, 721, 790
AjnI CCWGG 2 cut(s) 52, 696
AluBI AGCT 7 cut(s) 140, 281, 717, 767, 914, 921, 977
AluI AGCT 7 cut(s) 140, 281, 717, 767, 914, 921, 977
AlwI GGATC 3 cut(s) 668, 693, 885
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 3 cut(s) 642, 741, 977
AseI ATTAAT 1 cut(s) 590
AspLEI GCGC 1 cut(s) 930
AsuC2I CCSGG 2 cut(s) 269, 857
AsuHPI GGTGA 6 cut(s) 59, 121, 398, 487, 547, 591
BanII GRGCYC 2 cut(s) 379, 548
BbsI GAAGAC 2 cut(s) 118, 356
BbvI GCAGC 3 cut(s) 629, 753, 964
BccI CCATC 3 cut(s) 34, 610, 1007
BciT130I CCWGG 2 cut(s) 54, 698
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 2 cut(s) 269, 857
BfaI CTAG 1 cut(s) 135
BisI GCNGC 3 cut(s) 643, 742, 978
BlsI GCNGC 3 cut(s) 644, 743, 979
Bme1390I CCNGG 4 cut(s) 54, 269, 698, 857
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 4 cut(s) 54, 269, 698, 857
BmrI ACTGGG 1 cut(s) 409
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 2 cut(s) 118, 356
BpuEI CTTGAG 1 cut(s) 894
BpuMI CCSGG 2 cut(s) 269, 857
BsaJI CCNNGG 5 cut(s) 173, 185, 381, 696, 795
BsaWI WCCGGW 1 cut(s) 839
Bsc4I CCNNNNNNNGG 2 cut(s) 839, 863
Bse1I ACTGG 3 cut(s) 256, 293, 404
BseBI CCWGG 2 cut(s) 54, 698
BseDI CCNNGG 5 cut(s) 173, 185, 381, 696, 795
BseGI GGATG 3 cut(s) 82, 602, 706
BseLI CCNNNNNNNGG 2 cut(s) 839, 863
BseMII CTCAG 3 cut(s) 450, 894, 987
BseNI ACTGG 3 cut(s) 256, 293, 404
BseXI GCAGC 3 cut(s) 629, 753, 964
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 520
BshFI GGCC 1 cut(s) 326
BsiSI CCGG 3 cut(s) 268, 840, 857
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 839, 863
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 326
Bsp1286I GDGCHC 2 cut(s) 379, 548
Bsp143I GATC 4 cut(s) 559, 673, 685, 877
BspACI CCGC 2 cut(s) 132, 568
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 3 cut(s) 449, 895, 986
BspLI GGNNCC 1 cut(s) 378
BspPI GGATC 3 cut(s) 668, 693, 885
BsrI ACTGG 3 cut(s) 256, 293, 404
BssECI CCNNGG 5 cut(s) 173, 185, 381, 696, 795
BssMI GATC 4 cut(s) 559, 673, 685, 877
BssT1I CCWWGG 3 cut(s) 173, 185, 381
Bst2UI CCWGG 2 cut(s) 54, 698
Bst4CI ACNGT 3 cut(s) 122, 617, 637
BstDEI CTNAG 3 cut(s) 436, 903, 973
BstF5I GGATG 3 cut(s) 82, 602, 706
BstHHI GCGC 1 cut(s) 930
BstKTI GATC 4 cut(s) 562, 676, 688, 880
BstMBI GATC 4 cut(s) 559, 673, 685, 877
BstMWI GCNNNNNNNGC 4 cut(s) 278, 747, 904, 927
BstNI CCWGG 2 cut(s) 54, 698
BstNSI RCATGY 1 cut(s) 659
BstSCI CCNGG 4 cut(s) 52, 267, 696, 855
BstV1I GCAGC 3 cut(s) 629, 753, 964
BstV2I GAAGAC 2 cut(s) 118, 356
BsuRI GGCC 1 cut(s) 326
BtgZI GCGATG 1 cut(s) 636
BtsCI GGATG 3 cut(s) 82, 602, 706
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 3 cut(s) 127, 508, 622
CfoI GCGC 1 cut(s) 930
Csp6I GTAC 4 cut(s) 217, 286, 415, 853
CviAII CATG 4 cut(s) 406, 410, 656, 736
CviQI GTAC 4 cut(s) 217, 286, 415, 853
DdeI CTNAG 3 cut(s) 436, 903, 973
DpnI GATC 4 cut(s) 561, 675, 687, 879
DpnII GATC 4 cut(s) 559, 673, 685, 877
EciI GGCGGA 1 cut(s) 557
Eco130I CCWWGG 3 cut(s) 173, 185, 381
Eco24I GRGCYC 2 cut(s) 379, 548
Eco57I CTGAAG 1 cut(s) 297
EcoRII CCWGG 2 cut(s) 52, 696
EcoT14I CCWWGG 3 cut(s) 173, 185, 381
EcoT22I ATGCAT 1 cut(s) 411
EcoT38I GRGCYC 2 cut(s) 379, 548
ErhI CCWWGG 3 cut(s) 173, 185, 381
FaeI CATG 4 cut(s) 409, 413, 659, 739
FaqI GGGAC 1 cut(s) 248
FatI CATG 4 cut(s) 405, 409, 655, 735
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 3 cut(s) 643, 742, 978
FokI GGATG 3 cut(s) 89, 589, 713
FriOI GRGCYC 2 cut(s) 379, 548
Fsp4HI GCNGC 3 cut(s) 643, 742, 978
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 929
GluI GCNGC 3 cut(s) 643, 742, 978
GsaI CCCAGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 326
HapII CCGG 3 cut(s) 268, 840, 857
HhaI GCGC 1 cut(s) 930
Hin1II CATG 4 cut(s) 409, 413, 659, 739
Hin6I GCGC 1 cut(s) 928
HinP1I GCGC 1 cut(s) 928
HindIII AAGCTT 1 cut(s) 919
HinfI GANTC 5 cut(s) 57, 352, 596, 860, 995
HpaII CCGG 3 cut(s) 268, 840, 857
HphI GGTGA 6 cut(s) 59, 121, 398, 487, 547, 591
Hpy188I TCNGA 4 cut(s) 62, 673, 690, 804
Hpy188III TCNNGA 3 cut(s) 451, 956, 1003
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 4 cut(s) 103, 366, 419, 582
HpyCH4III ACNGT 3 cut(s) 122, 617, 637
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 5 cut(s) 409, 483, 501, 850, 874
HpyF10VI GCNNNNNNNGC 4 cut(s) 278, 747, 904, 927
HpyF3I CTNAG 3 cut(s) 436, 903, 973
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 4 cut(s) 409, 413, 659, 739
HspAI GCGC 1 cut(s) 928
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 4 cut(s) 559, 673, 685, 877
LmnI GCTCC 3 cut(s) 382, 919, 985
Lsp1109I GCAGC 3 cut(s) 629, 753, 964
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 617
MalI GATC 4 cut(s) 561, 675, 687, 879
MboI GATC 4 cut(s) 559, 673, 685, 877
MboII GAAGA 8 cut(s) 41, 92, 118, 358, 361, 523, 762, 768
MhlI GDGCHC 2 cut(s) 379, 548
MluCI AATT 4 cut(s) 563, 931, 940, 1006
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 2 cut(s) 319, 843
MnlI CCTC 9 cut(s) 60, 142, 183, 225, 531, 676, 805, 885, 918
Mph1103I ATGCAT 1 cut(s) 411
MseI TTAA 3 cut(s) 257, 590, 923
MspA1I CMGCKG 1 cut(s) 977
MspI CCGG 3 cut(s) 268, 840, 857
MspR9I CCNGG 4 cut(s) 54, 269, 698, 857
MvaI CCWGG 2 cut(s) 54, 698
MwoI GCNNNNNNNGC 4 cut(s) 278, 747, 904, 927
NciI CCSGG 2 cut(s) 269, 857
NdeII GATC 4 cut(s) 559, 673, 685, 877
NlaIII CATG 4 cut(s) 409, 413, 659, 739
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 617
NsiI ATGCAT 1 cut(s) 411
NspI RCATGY 1 cut(s) 659
PfeI GAWTC 4 cut(s) 57, 596, 860, 995
PflFI GACNNNGTC 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 52
PkrI GCNGC 3 cut(s) 644, 743, 979
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PshBI ATTAAT 1 cut(s) 590
Psp1406I AACGTT 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 52, 696
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 2 cut(s) 52, 696
PspN4I GGNNCC 1 cut(s) 378
PsyI GACNNNGTC 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 977
RsaI GTAC 4 cut(s) 218, 287, 416, 854
RsaNI GTAC 4 cut(s) 217, 286, 415, 853
SaqAI TTAA 3 cut(s) 257, 590, 923
SatI GCNGC 3 cut(s) 643, 742, 978
Sau3AI GATC 4 cut(s) 559, 673, 685, 877
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 4 cut(s) 54, 269, 698, 857
SduI GDGCHC 2 cut(s) 379, 548
SmlI CTYRAG 1 cut(s) 909
SmoI CTYRAG 1 cut(s) 909
Sse9I AATT 4 cut(s) 563, 931, 940, 1006
SsiI CCGC 2 cut(s) 132, 568
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 4 cut(s) 52, 267, 696, 855
StyI CCWWGG 3 cut(s) 173, 185, 381
TaaI ACNGT 3 cut(s) 122, 617, 637
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 711
TasI AATT 4 cut(s) 563, 931, 940, 1006
TatI WGTACW 1 cut(s) 414
TfiI GAWTC 4 cut(s) 57, 596, 860, 995
Tru1I TTAA 3 cut(s) 257, 590, 923
Tru9I TTAA 3 cut(s) 257, 590, 923
TscAI CASTG 3 cut(s) 127, 508, 622
TseFI GTSAC 1 cut(s) 617
TseI GCWGC 3 cut(s) 642, 741, 977
Tsp45I GTSAC 1 cut(s) 617
TspDTI ATGAA 5 cut(s) 93, 359, 762, 768, 924
TspGWI ACGGA 4 cut(s) 89, 567, 774, 954
TspRI CASTG 3 cut(s) 127, 508, 622
Tth111I GACNNNGTC 1 cut(s) 122
VspI ATTAAT 1 cut(s) 590
XceI RCATGY 1 cut(s) 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XspI CTAG 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.