Rroxscaffold_2G00083490
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011691
Physical Location & Seq
Forward (+)
6177966 .. 6179673
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00083490.1

Sequence Viewer

Length: 708 bp
ATGGGCGAAAAGGAATGGTACTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTTTAAGAACTAACCGGGCAACTGAAGCTGGGTACTGGAAAGCCACAGGCAAAGACAAGGAGATTTACAAGGCCAAAGCCCTTGTTGGAATGAAGAAGACTCTGGTTTTCTACAAAGGAAGGGCTCCAAAGGGTGAAAAGACCAACTGGGTCATGCATGAGTACAGATTGGAAGGCAAATACTCAGCCTACAATCTCCCCAAAACAGCTAAGAATGAGTGGGTGATTTGCAGAATTTTCCAAAAGTGTAGTGGTGGGAAGAAAACCCATATTTCGGGGTTGGTGAGGGATAGCCCTTTCGGAAACGAATTCCACCCTTCTTTCCTGCCACCACTAATGGATTCTCCACCCTACAACAACAGTGACACAAGAACCACCACCGTCGGTGAAACATCGCATGTGTCCTGCTTCTCCGATGCAATGGAGGATCAGAAAACCCAGGATGACATTATCGACAGCTTCAACAACATCAACAATATCAGCAGCAGCAACAACAACAACAGTCATCTGTTAGCTTCTTCATCCTCATTTCCCGTTCAAGTCCTCGGTGCAGAACTCTTACTTCTCCGACCAAATCGCACCAAACACCGGAAATATGCAGTACCAGGACTCTGGTTTTTTGCAAGACCAGTCTATTATGAGGTTGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007568 GO:0007569 GO:0008150 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044093 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0046677 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:0090398 GO:0090400 GO:0090693 GO:0090696 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900140 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:1904248 GO:1904250 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

235

Amino Acids

26.89

Weight (kDa)

9.36

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 2 - 75 1.8e-27 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011691)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39610
fragaria_vesca FvH4_6g48120
malus_domestica MD09G1053700.v1.1 MD17G1051600.v1.1
prunus_persica Prupe.3G264600_v2.0.a1
pyrus_communis pycom111g04470 pycom17g04870
rosa_chinensis RchiOBHm_Chr2g0167461
rosa_laevigata RLG00000021720
rosa_multiflora Rmu_sc0001206.1_g000039 Rmu_sc0019611.1_g000001
rosa_roxburghii Rroxscaffold_2G00083490
rosa_rugosa Rorug02G0530400
rosa_samantha Rh2AG597500 Rh2BG608900 Rh2CG579800 Rh2DG620100 Rh7BG045200
rosa_wichuraiana Rw2G049720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 489
AcsI RAATTY 2 cut(s) 288, 362
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 4 cut(s) 20, 89, 218, 657
AfiI CCNNNNNNNGG 2 cut(s) 328, 642
AgsI TTSAA 2 cut(s) 517, 593
AjnI CCWGG 2 cut(s) 492, 658
AluBI AGCT 4 cut(s) 83, 263, 513, 569
AluI AGCT 4 cut(s) 83, 263, 513, 569
AlwI GGATC 1 cut(s) 489
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 537, 540
ApoI RAATTY 2 cut(s) 288, 362
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 4 cut(s) 200, 289, 349, 452
BanII GRGCYC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 549, 552
BciT130I CCWGG 2 cut(s) 494, 660
BcnI CCSGG 1 cut(s) 71
BisI GCNGC 2 cut(s) 538, 541
BlsI GCNGC 2 cut(s) 539, 542
Bme1390I CCNGG 3 cut(s) 71, 494, 660
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 3 cut(s) 71, 494, 660
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 492, 598
BsaWI WCCGGW 1 cut(s) 642
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 642
Bse1I ACTGG 4 cut(s) 58, 95, 206, 683
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 2 cut(s) 494, 660
BseDI CCNNGG 2 cut(s) 492, 598
BseGI GGATG 2 cut(s) 502, 575
BseLI CCNNNNNNNGG 2 cut(s) 328, 642
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 4 cut(s) 58, 95, 206, 683
BseXI GCAGC 2 cut(s) 549, 552
BseYI CCCAGC 1 cut(s) 83
BsgI GTGCAG 1 cut(s) 624
BshFI GGCC 1 cut(s) 128
BsiSI CCGG 2 cut(s) 70, 643
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 328, 642
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 481
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 4 cut(s) 58, 95, 206, 683
BssECI CCNNGG 2 cut(s) 492, 598
BssMI GATC 1 cut(s) 481
Bst2UI CCWGG 2 cut(s) 494, 660
Bst4CI ACNGT 3 cut(s) 416, 436, 557
BstDEI CTNAG 2 cut(s) 238, 264
BstF5I GGATG 2 cut(s) 502, 575
BstKTI GATC 1 cut(s) 484
BstMBI GATC 1 cut(s) 481
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 2 cut(s) 494, 660
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 3 cut(s) 69, 492, 658
BstV1I GCAGC 2 cut(s) 549, 552
BstV2I GAAGAC 1 cut(s) 158
BstXI CCANNNNNNTGG 1 cut(s) 666
BsuRI GGCC 1 cut(s) 128
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 2 cut(s) 502, 575
BtsIMutI CAGTG 1 cut(s) 421
Csp6I GTAC 4 cut(s) 19, 88, 217, 656
CviAII CATG 3 cut(s) 208, 212, 452
CviQI GTAC 4 cut(s) 19, 88, 217, 656
DdeI CTNAG 2 cut(s) 238, 264
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
Eco24I GRGCYC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 99
EcoRI GAATTC 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 492, 658
EcoT22I ATGCAT 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 181
FaeI CATG 3 cut(s) 211, 215, 455
FaiI YATR 6 cut(s) 209, 213, 324, 453, 651, 693
FaqI GGGAC 1 cut(s) 50
FatI CATG 3 cut(s) 207, 211, 451
Fnu4HI GCNGC 2 cut(s) 538, 541
FokI GGATG 2 cut(s) 509, 562
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 2 cut(s) 538, 541
GluI GCNGC 2 cut(s) 538, 541
GsaI CCCAGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 128
HapII CCGG 2 cut(s) 70, 643
Hin1II CATG 3 cut(s) 211, 215, 455
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HinfI GANTC 3 cut(s) 154, 395, 663
HpaII CCGG 2 cut(s) 70, 643
HphI GGTGA 4 cut(s) 200, 289, 349, 452
Hpy166II GTNNAC 1 cut(s) 703
Hpy188I TCNGA 4 cut(s) 356, 469, 486, 623
Hpy8I GTNNAC 1 cut(s) 703
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 3 cut(s) 168, 221, 381
HpyCH4III ACNGT 3 cut(s) 416, 436, 557
HpyCH4V TGCA 6 cut(s) 211, 285, 473, 605, 653, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 2 cut(s) 238, 264
Hsp92II CATG 3 cut(s) 211, 215, 455
Kzo9I GATC 1 cut(s) 481
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 2 cut(s) 549, 552
LweI GCATC 1 cut(s) 460
MaeIII GTNAC 1 cut(s) 416
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MboII GAAGA 4 cut(s) 160, 163, 325, 564
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 2 cut(s) 288, 362
MlyI GAGTC 2 cut(s) 148, 657
MmeI TCCRAC 2 cut(s) 121, 646
MnlI CCTC 6 cut(s) 27, 333, 472, 589, 608, 688
Mph1103I ATGCAT 1 cut(s) 213
MseI TTAA 1 cut(s) 59
MspI CCGG 2 cut(s) 70, 643
MspR9I CCNGG 3 cut(s) 71, 494, 660
MvaI CCWGG 2 cut(s) 494, 660
MwoI GCNNNNNNNGC 1 cut(s) 80
NciI CCSGG 1 cut(s) 71
NdeII GATC 1 cut(s) 481
NlaIII CATG 3 cut(s) 211, 215, 455
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 416
NsiI ATGCAT 1 cut(s) 213
NspI RCATGY 1 cut(s) 455
PfeI GAWTC 1 cut(s) 395
PkrI GCNGC 2 cut(s) 539, 542
PleI GAGTC 2 cut(s) 148, 657
PpsI GAGTC 2 cut(s) 148, 657
Psp6I CCWGG 2 cut(s) 492, 658
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 2 cut(s) 492, 658
PspN4I GGNNCC 1 cut(s) 180
RsaI GTAC 4 cut(s) 20, 89, 218, 657
RsaNI GTAC 4 cut(s) 19, 88, 217, 656
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 2 cut(s) 538, 541
Sau3AI GATC 1 cut(s) 481
SchI GAGTC 2 cut(s) 148, 657
ScrFI CCNGG 3 cut(s) 71, 494, 660
SduI GDGCHC 1 cut(s) 181
SetI ASST 5 cut(s) 85, 265, 515, 571, 699
SfaNI GCATC 1 cut(s) 460
Sse9I AATT 2 cut(s) 288, 362
StyD4I CCNGG 3 cut(s) 69, 492, 658
TaaI ACNGT 3 cut(s) 416, 436, 557
TaqI TCGA 1 cut(s) 507
TasI AATT 2 cut(s) 288, 362
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 2 cut(s) 537, 540
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 2 cut(s) 161, 564
TspRI CASTG 1 cut(s) 421
XapI RAATTY 2 cut(s) 288, 362
XceI RCATGY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
Zsp2I ATGCAT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.