Rh7BG045200
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011691
Physical Location & Seq
Forward (+)
2868201 .. 2871338
3138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG045200.1

Sequence Viewer

Length: 291 bp
ATGAGGCAGAACTTCAAAACAGAGAGGGACATGATCAGTGTGTCTCAAGAAACAGGTCTTACTAATGTGAACCCTGAAATCTCTTCTGTCATGCCAAATCCTGAGATGGAGGTTGTTGGGTGTGCATACTTCAACAGCGCTGCTCGGACGTGTGGGTGTGTCGTTGGCGGCGAGGATCAAGCGGGTCGGGTTCTGGCCATTGCTTCCAGGCACGGTGGACGGTCCTGCGCAACACGGGTCGTGGGCTTCTCCAGAGCTCTGGGCCTATATGGACCTCTACTGGTGGGCTAG

Protein Analysis

96

Amino Acids

10.15

Weight (kDa)

7.68

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011691)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39610
fragaria_vesca FvH4_6g48120
malus_domestica MD09G1053700.v1.1 MD17G1051600.v1.1
prunus_persica Prupe.3G264600_v2.0.a1
pyrus_communis pycom111g04470 pycom17g04870
rosa_chinensis RchiOBHm_Chr2g0167461
rosa_laevigata RLG00000021720
rosa_multiflora Rmu_sc0001206.1_g000039 Rmu_sc0019611.1_g000001
rosa_roxburghii Rroxscaffold_2G00083490
rosa_rugosa Rorug02G0530400
rosa_samantha Rh2AG597500 Rh2BG608900 Rh2CG579800 Rh2DG620100 Rh7BG045200
rosa_wichuraiana Rw2G049720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 229
AciI CCGC 2 cut(s) 168, 182
AclWI GGATC 1 cut(s) 183
AcoI YGGCCR 1 cut(s) 195
AfeI AGCGCT 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 149
AgsI TTSAA 2 cut(s) 16, 133
AjiI CACGTC 1 cut(s) 150
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 1 cut(s) 183
Aor51HI AGCGCT 1 cut(s) 139
AoxI GGCC 2 cut(s) 195, 262
ApeKI GCWGC 1 cut(s) 140
AspLEI GCGC 2 cut(s) 140, 230
AspS9I GGNCC 3 cut(s) 222, 262, 272
AvaII GGWCC 2 cut(s) 222, 272
BalI TGGCCA 1 cut(s) 197
BanII GRGCYC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 141
BisI GCNGC 2 cut(s) 141, 169
BlsI GCNGC 2 cut(s) 142, 170
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 2 cut(s) 222, 272
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 3 cut(s) 222, 262, 272
BmrFI CCNGG 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 127
BshFI GGCC 2 cut(s) 197, 264
BsiHKAI GWGCWC 1 cut(s) 259
BslFI GGGAC 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 2 cut(s) 197, 264
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 33, 175
BspACI CCGC 2 cut(s) 168, 182
BspANI GGCC 2 cut(s) 197, 264
BspCNI CTCAG 1 cut(s) 94
BspPI GGATC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 1 cut(s) 285
BssMI GATC 2 cut(s) 33, 175
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 215, 222
Bst6I CTCTTC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 140, 230
BstKTI GATC 2 cut(s) 36, 178
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 2 cut(s) 33, 175
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 259
BsuRI GGCC 2 cut(s) 197, 264
BtrI CACGTC 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 43
CfoI GCGC 2 cut(s) 140, 230
Cfr13I GGNCC 3 cut(s) 222, 262, 272
CviAII CATG 2 cut(s) 31, 91
CviJI RGCY 5 cut(s) 197, 246, 257, 264, 288
CviKI_1 RGCY 5 cut(s) 197, 246, 257, 264, 288
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 35, 177
DpnII GATC 2 cut(s) 33, 175
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 222, 272
Eco47III AGCGCT 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 259
FaeI CATG 2 cut(s) 34, 94
FaiI YATR 5 cut(s) 32, 92, 127, 268, 270
FaqI GGGAC 1 cut(s) 41
FatI CATG 2 cut(s) 30, 90
FauI CCCGC 1 cut(s) 175
FbaI TGATCA 1 cut(s) 33
Fnu4HI GCNGC 2 cut(s) 141, 169
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 2 cut(s) 141, 169
FspBI CTAG 1 cut(s) 289
FspI TGCGCA 1 cut(s) 229
GlaI GCGC 2 cut(s) 139, 229
GluI GCNGC 2 cut(s) 141, 169
GsuI CTGGAG 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 2 cut(s) 197, 264
HhaI GCGC 2 cut(s) 140, 230
Hin1II CATG 2 cut(s) 34, 94
Hin6I GCGC 2 cut(s) 138, 228
HinP1I GCGC 2 cut(s) 138, 228
Hpy166II GTNNAC 2 cut(s) 70, 218
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 3 cut(s) 47, 101, 252
Hpy8I GTNNAC 2 cut(s) 70, 218
HpyCH4III ACNGT 2 cut(s) 215, 222
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 2 cut(s) 34, 94
HspAI GCGC 2 cut(s) 138, 228
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 2 cut(s) 33, 175
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 1 cut(s) 289
MaeII ACGT 1 cut(s) 149
MalI GATC 2 cut(s) 35, 177
MboI GATC 2 cut(s) 33, 175
MboII GAAGA 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 259
MlsI TGGCCA 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 197
MnlI CCTC 4 cut(s) 18, 103, 166, 285
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
NdeII GATC 2 cut(s) 33, 175
NlaIII CATG 2 cut(s) 34, 94
NsbI TGCGCA 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PkrI GCNGC 2 cut(s) 142, 170
Psp124BI GAGCTC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspPI GGNCC 3 cut(s) 222, 262, 272
SacI GAGCTC 1 cut(s) 259
SatI GCNGC 2 cut(s) 141, 169
Sau3AI GATC 2 cut(s) 33, 175
Sau96I GGNCC 3 cut(s) 222, 262, 272
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 259
SetI ASST 5 cut(s) 58, 114, 152, 259, 277
SinI GGWCC 2 cut(s) 222, 272
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
SsiI CCGC 2 cut(s) 168, 182
SspMI CTAG 1 cut(s) 289
SstI GAGCTC 1 cut(s) 259
StyD4I CCNGG 1 cut(s) 206
TaaI ACNGT 2 cut(s) 215, 222
TaiI ACGT 1 cut(s) 152
TauI GCSGC 1 cut(s) 171
TscAI CASTG 1 cut(s) 43
TseI GCWGC 1 cut(s) 140
TspRI CASTG 1 cut(s) 43
VpaK11BI GGWCC 2 cut(s) 222, 272
XspI CTAG 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.