Rh2CG579800
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011691
Physical Location & Seq
Reverse (-)
75894435 .. 75896571
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG579800.1

Sequence Viewer

Length: 822 bp
ATGGGTGAAAAGGAATGGTACTTTTTCTGTGTGCGGGACAGAAAATACCCAACTGGTTTAAGAACTAACCGGGCAACCGAAGCTGGGTACTGGAAAGCCACAGGCAAAGACAAGGAGATTTACAAGGCCAAAGCCCTTGTTGGAATGAAGAAGACTCTGGTTTTCTACAAAGGAAGGGCTCCAAAGGGTGAAAAGACCAACTGGGTCATGCATGAGTACAGATTGGAAGGCAAATACTCAGCCTATAATCTCCCCAAAACAGCTAAGAATGAGTGGGTGATTTGCAGAATTTTCCAAAAGTGTAGTGGTGGGAAGAAAACTCATATTTCGGGGTTGGTGAGGGAGAGCCCTTTCGGAAACGAATTCCGCCCTTCTTTCCTGCCACCACTAATGGATTCTCCACCCTACAACAACAGTGACACAAGAACCACCACCGTCGGTGAAACATCGCATGTGTCCTGCTTCTCCGATGCAATGGAGGATCAGAAAACCCAGGATGACATTATCGACAGCTTCAACAACAACAACAATATCAGCAGCAGCAGCAACAACAACAACAACAGTCATCTGTTAGCTTCTTCATCCTCATTTCCGTTCAAGTCCTCGGTGCAGAACTCTTACTTCTCCCACGAAATCTCACCAAACACCGGAAATATGCAGTACCCGGACTCTGGTTTTATGCAAGACCAGTCTATAATGAGGTTGTTGACTGAGCCTCAAGATCCAAGCTTGAGGCGCAGCTCATCAAATTATTTGGGGGGTCAAGATGTTCCATCATACTCAGCTGCTCCAATAGAGTTTGATTCCATCTGGAATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007568 GO:0007569 GO:0008150 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044093 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0046677 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:0090398 GO:0090400 GO:0090693 GO:0090696 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900140 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:1904248 GO:1904250 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

273

Amino Acids

31.02

Weight (kDa)

8.71

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 2 - 75 2.4e-27 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011691)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39610
fragaria_vesca FvH4_6g48120
malus_domestica MD09G1053700.v1.1 MD17G1051600.v1.1
prunus_persica Prupe.3G264600_v2.0.a1
pyrus_communis pycom111g04470 pycom17g04870
rosa_chinensis RchiOBHm_Chr2g0167461
rosa_laevigata RLG00000021720
rosa_multiflora Rmu_sc0001206.1_g000039 Rmu_sc0019611.1_g000001
rosa_roxburghii Rroxscaffold_2G00083490
rosa_rugosa Rorug02G0530400
rosa_samantha Rh2AG597500 Rh2BG608900 Rh2CG579800 Rh2DG620100 Rh7BG045200
rosa_wichuraiana Rw2G049720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 34, 367
AclWI GGATC 2 cut(s) 489, 716
AcsI RAATTY 2 cut(s) 288, 362
AfaI GTAC 4 cut(s) 20, 89, 218, 662
AfiI CCNNNNNNNGG 3 cut(s) 84, 647, 671
AgsI TTSAA 2 cut(s) 517, 598
AjnI CCWGG 1 cut(s) 492
AluBI AGCT 7 cut(s) 83, 263, 513, 575, 729, 741, 785
AluI AGCT 7 cut(s) 83, 263, 513, 575, 729, 741, 785
AlwI GGATC 2 cut(s) 489, 716
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 5 cut(s) 537, 540, 543, 738, 785
ApoI RAATTY 2 cut(s) 288, 362
AspLEI GCGC 1 cut(s) 738
AsuC2I CCSGG 2 cut(s) 71, 665
AsuHPI GGTGA 6 cut(s) 17, 200, 289, 349, 452, 630
BanII GRGCYC 2 cut(s) 181, 350
BbsI GAAGAC 1 cut(s) 158
BbvI GCAGC 5 cut(s) 549, 552, 555, 750, 772
BccI CCATC 2 cut(s) 781, 815
BciT130I CCWGG 1 cut(s) 494
BcnI CCSGG 2 cut(s) 71, 665
BisI GCNGC 5 cut(s) 538, 541, 544, 739, 786
BlsI GCNGC 5 cut(s) 539, 542, 545, 740, 787
Bme1390I CCNGG 3 cut(s) 71, 494, 665
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 3 cut(s) 71, 494, 665
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 158
BpuEI CTTGAG 2 cut(s) 702, 751
BpuMI CCSGG 2 cut(s) 71, 665
BsaJI CCNNGG 2 cut(s) 492, 603
BsaWI WCCGGW 1 cut(s) 647
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 647, 671
Bse1I ACTGG 4 cut(s) 58, 95, 206, 688
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 2 cut(s) 492, 603
BseGI GGATG 2 cut(s) 502, 581
BseLI CCNNNNNNNGG 3 cut(s) 84, 647, 671
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 3 cut(s) 252, 702, 795
BseNI ACTGG 4 cut(s) 58, 95, 206, 688
BseXI GCAGC 5 cut(s) 549, 552, 555, 750, 772
BseYI CCCAGC 1 cut(s) 83
BsgI GTGCAG 1 cut(s) 629
BshFI GGCC 1 cut(s) 128
BsiSI CCGG 3 cut(s) 70, 648, 665
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 3 cut(s) 84, 647, 671
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 181, 350
Bsp143I GATC 2 cut(s) 481, 721
BspACI CCGC 2 cut(s) 34, 367
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 3 cut(s) 251, 703, 794
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 2 cut(s) 489, 716
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 4 cut(s) 58, 95, 206, 688
BssECI CCNNGG 2 cut(s) 492, 603
BssMI GATC 2 cut(s) 481, 721
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 3 cut(s) 416, 436, 563
BstDEI CTNAG 4 cut(s) 238, 264, 711, 781
BstF5I GGATG 2 cut(s) 502, 581
BstHHI GCGC 1 cut(s) 738
BstKTI GATC 2 cut(s) 484, 724
BstMBI GATC 2 cut(s) 481, 721
BstMWI GCNNNNNNNGC 3 cut(s) 80, 543, 735
BstNI CCWGG 1 cut(s) 494
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 3 cut(s) 69, 492, 663
BstV1I GCAGC 5 cut(s) 549, 552, 555, 750, 772
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 721
BstYI RGATCY 1 cut(s) 721
BsuRI GGCC 1 cut(s) 128
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 2 cut(s) 502, 581
BtsIMutI CAGTG 1 cut(s) 421
CfoI GCGC 1 cut(s) 738
Csp6I GTAC 4 cut(s) 19, 88, 217, 661
CviAII CATG 3 cut(s) 208, 212, 452
CviQI GTAC 4 cut(s) 19, 88, 217, 661
DdeI CTNAG 4 cut(s) 238, 264, 711, 781
DpnI GATC 2 cut(s) 483, 723
DpnII GATC 2 cut(s) 481, 721
EciI GGCGGA 1 cut(s) 356
Eco24I GRGCYC 2 cut(s) 181, 350
EcoRI GAATTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 492
EcoT22I ATGCAT 1 cut(s) 213
EcoT38I GRGCYC 2 cut(s) 181, 350
FaeI CATG 3 cut(s) 211, 215, 455
FaiI YATR 9 cut(s) 209, 213, 246, 324, 453, 656, 680, 695, 778
FaqI GGGAC 1 cut(s) 50
FatI CATG 3 cut(s) 207, 211, 451
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 5 cut(s) 538, 541, 544, 739, 786
FokI GGATG 2 cut(s) 509, 568
FriOI GRGCYC 2 cut(s) 181, 350
Fsp4HI GCNGC 5 cut(s) 538, 541, 544, 739, 786
GlaI GCGC 1 cut(s) 737
GluI GCNGC 5 cut(s) 538, 541, 544, 739, 786
GsaI CCCAGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 128
HapII CCGG 3 cut(s) 70, 648, 665
HhaI GCGC 1 cut(s) 738
Hin1II CATG 3 cut(s) 211, 215, 455
Hin6I GCGC 1 cut(s) 736
HinP1I GCGC 1 cut(s) 736
HincII GTYRAC 1 cut(s) 708
HindII GTYRAC 1 cut(s) 708
HindIII AAGCTT 1 cut(s) 727
HinfI GANTC 4 cut(s) 154, 395, 668, 803
HpaII CCGG 3 cut(s) 70, 648, 665
HphI GGTGA 6 cut(s) 17, 200, 289, 349, 452, 630
Hpy166II GTNNAC 1 cut(s) 708
Hpy188I TCNGA 3 cut(s) 356, 469, 486
Hpy188III TCNNGA 3 cut(s) 719, 764, 811
Hpy8I GTNNAC 1 cut(s) 708
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 3 cut(s) 168, 221, 381
HpyCH4III ACNGT 3 cut(s) 416, 436, 563
HpyCH4V TGCA 6 cut(s) 211, 285, 473, 610, 658, 682
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 543, 735
HpyF3I CTNAG 4 cut(s) 238, 264, 711, 781
Hsp92II CATG 3 cut(s) 211, 215, 455
HspAI GCGC 1 cut(s) 736
Kzo9I GATC 2 cut(s) 481, 721
LmnI GCTCC 2 cut(s) 184, 793
Lsp1109I GCAGC 5 cut(s) 549, 552, 555, 750, 772
LweI GCATC 1 cut(s) 460
MaeIII GTNAC 1 cut(s) 416
MalI GATC 2 cut(s) 483, 723
MboI GATC 2 cut(s) 481, 721
MboII GAAGA 4 cut(s) 160, 163, 325, 570
MflI RGATCY 1 cut(s) 721
MhlI GDGCHC 2 cut(s) 181, 350
MluCI AATT 4 cut(s) 288, 362, 748, 814
MlyI GAGTC 2 cut(s) 148, 662
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 7 cut(s) 333, 472, 595, 613, 693, 726, 726
Mph1103I ATGCAT 1 cut(s) 213
MseI TTAA 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 785
MspI CCGG 3 cut(s) 70, 648, 665
MspR9I CCNGG 3 cut(s) 71, 494, 665
MvaI CCWGG 1 cut(s) 494
MwoI GCNNNNNNNGC 3 cut(s) 80, 543, 735
NciI CCSGG 2 cut(s) 71, 665
NdeII GATC 2 cut(s) 481, 721
NlaIII CATG 3 cut(s) 211, 215, 455
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 416
NsiI ATGCAT 1 cut(s) 213
NspI RCATGY 1 cut(s) 455
PfeI GAWTC 2 cut(s) 395, 803
PkrI GCNGC 5 cut(s) 539, 542, 545, 740, 787
PleI GAGTC 2 cut(s) 148, 662
PpsI GAGTC 2 cut(s) 148, 662
Psp6I CCWGG 1 cut(s) 492
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 721
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 4 cut(s) 20, 89, 218, 662
RsaNI GTAC 4 cut(s) 19, 88, 217, 661
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 5 cut(s) 538, 541, 544, 739, 786
Sau3AI GATC 2 cut(s) 481, 721
SchI GAGTC 2 cut(s) 148, 662
ScrFI CCNGG 3 cut(s) 71, 494, 665
SduI GDGCHC 2 cut(s) 181, 350
SetI ASST 8 cut(s) 85, 265, 515, 577, 704, 731, 743, 787
SfaNI GCATC 1 cut(s) 460
SmlI CTYRAG 2 cut(s) 717, 730
SmoI CTYRAG 2 cut(s) 717, 730
Sse9I AATT 4 cut(s) 288, 362, 748, 814
SsiI CCGC 2 cut(s) 34, 367
StyD4I CCNGG 3 cut(s) 69, 492, 663
TaaI ACNGT 3 cut(s) 416, 436, 563
TaqI TCGA 1 cut(s) 507
TasI AATT 4 cut(s) 288, 362, 748, 814
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 2 cut(s) 395, 803
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 5 cut(s) 537, 540, 543, 738, 785
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 2 cut(s) 161, 570
TspGWI ACGGA 1 cut(s) 582
TspRI CASTG 1 cut(s) 421
XapI RAATTY 2 cut(s) 288, 362
XceI RCATGY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
Zsp2I ATGCAT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.