RLG00000021720
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011691
Physical Location & Seq
Reverse (-)
77516168 .. 77517392
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021720

Sequence Viewer

Length: 1011 bp
ATGGAAAATGTTTCTGCGTTTATTAATGAAGATGAGCAGATGGAATTGCCTCCTGGATTCCGATTTCACCCGACAGATGAAGAACTCATAAGCCACTACCTTTCCCCGAAGGTTCTTGACAGTGGCTTCACCGCTAGAGCAATTGGGGAGGTGGATTTGAACAAGTGTGAGCCTTGGGATTTGCCTTGGAGGGCTAAAATGGGTGAAAAGGAATGGTACTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTTTAAGAACTAACCGAGCAACTGAAGCTGGGTACTGGAAAGCCACAGGCAAAGACAAGGAGATTTACAAGGCCAAAGCCCTTGTTGGAATGAAGAAGACTCTGGTTTTCTACAAAGGAAGGGCTCCAAAGGGTGAAAAGACCAACTGGGTCATGCATGAGTACAGATTGGAAGGCAAATACTCAGCCTATAATCTCCCCAAAACAGCTAAGAATGAGTGGGTGATTTGCAGAATTTTCCAAAAGTGTAGTGGTGGGAAGAAAACTCATATTTCGGGGTTGGTGAGGGAGAGCCCTTTCGGAAACGAATTCCGCCCTTCTTTCTTGCCACCACTAATGGATTCTCCGCCCTACAACAACAGTGACACAAGAACCACCACCGTCGGTGAAACATCGCATGTGTCCTGCTTCTCCGATGCAATGGAGGATCAGAAAACCCAGGATGACATTATCGACAGCTTCAACAACAACATCAGCAGCAGCAACAACAACAACAACAGTCATCTGTTAGCTTCTTCATCCTCATTTCCGTTCAAGTCCTCGGTGCAGAACTCTTACTTCTCCAACCAAATCGCACCAAACACCGGAAATATGCAGTACCAGGACTCTGGTTTTATGCAAGACCAGTCTATTATGAGGTTGTTGACTGAGCCTCAAGCTCCAAGCTTGAGGCGCAGCTCGTCAAATTATTTGGGTGGTCAAGATGTTCCATCATACTCGGCTGCTCCAATAGAGTTTGATTCCATCTGGAATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007568 GO:0007569 GO:0008150 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044093 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0046677 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:0090398 GO:0090400 GO:0090693 GO:0090696 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900140 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:1904248 GO:1904250 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

337

Amino Acids

38.25

Weight (kDa)

6.62

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 141 4.8e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011691)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39610
fragaria_vesca FvH4_6g48120
malus_domestica MD09G1053700.v1.1 MD17G1051600.v1.1
prunus_persica Prupe.3G264600_v2.0.a1
pyrus_communis pycom111g04470 pycom17g04870
rosa_chinensis RchiOBHm_Chr2g0167461
rosa_laevigata RLG00000021720
rosa_multiflora Rmu_sc0001206.1_g000039 Rmu_sc0019611.1_g000001
rosa_roxburghii Rroxscaffold_2G00083490
rosa_rugosa Rorug02G0530400
rosa_samantha Rh2AG597500 Rh2BG608900 Rh2CG579800 Rh2DG620100 Rh7BG045200
rosa_wichuraiana Rw2G049720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 132, 565, 599
AclWI GGATC 1 cut(s) 687
AcsI RAATTY 2 cut(s) 486, 560
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 4 cut(s) 218, 287, 416, 851
AfiI CCNNNNNNNGG 1 cut(s) 836
AgsI TTSAA 3 cut(s) 160, 715, 787
AjnI CCWGG 3 cut(s) 52, 690, 852
AluBI AGCT 7 cut(s) 281, 461, 711, 764, 911, 918, 930
AluI AGCT 7 cut(s) 281, 461, 711, 764, 911, 918, 930
AlwI GGATC 1 cut(s) 687
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 4 cut(s) 729, 732, 927, 974
ApoI RAATTY 2 cut(s) 486, 560
AseI ATTAAT 1 cut(s) 24
AspLEI GCGC 1 cut(s) 927
AsuHPI GGTGA 7 cut(s) 59, 121, 215, 398, 487, 547, 650
BanII GRGCYC 2 cut(s) 379, 548
BbsI GAAGAC 1 cut(s) 356
BbvI GCAGC 4 cut(s) 741, 744, 939, 961
BccI CCATC 3 cut(s) 34, 970, 1004
BciT130I CCWGG 3 cut(s) 54, 692, 854
BfaI CTAG 1 cut(s) 135
BisI GCNGC 4 cut(s) 730, 733, 928, 975
BlsI GCNGC 4 cut(s) 731, 734, 929, 976
Bme1390I CCNGG 3 cut(s) 54, 692, 854
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 3 cut(s) 54, 692, 854
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 1 cut(s) 658
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 356
BpuEI CTTGAG 2 cut(s) 891, 940
BsaJI CCNNGG 4 cut(s) 173, 185, 690, 792
BsaWI WCCGGW 1 cut(s) 836
Bsc4I CCNNNNNNNGG 1 cut(s) 836
Bse1I ACTGG 4 cut(s) 256, 293, 404, 877
Bse3DI GCAATG 1 cut(s) 678
BseBI CCWGG 3 cut(s) 54, 692, 854
BseDI CCNNGG 4 cut(s) 173, 185, 690, 792
BseGI GGATG 2 cut(s) 700, 770
BseLI CCNNNNNNNGG 1 cut(s) 836
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 2 cut(s) 450, 891
BseNI ACTGG 4 cut(s) 256, 293, 404, 877
BseXI GCAGC 4 cut(s) 741, 744, 939, 961
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 818
BshFI GGCC 1 cut(s) 326
BsiSI CCGG 1 cut(s) 837
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 836
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 326
Bsp1286I GDGCHC 2 cut(s) 379, 548
Bsp143I GATC 1 cut(s) 679
BspACI CCGC 3 cut(s) 132, 565, 599
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 2 cut(s) 449, 892
BspLI GGNNCC 1 cut(s) 378
BspPI GGATC 1 cut(s) 687
BsrDI GCAATG 1 cut(s) 678
BsrI ACTGG 4 cut(s) 256, 293, 404, 877
BssECI CCNNGG 4 cut(s) 173, 185, 690, 792
BssMI GATC 1 cut(s) 679
BssT1I CCWWGG 2 cut(s) 173, 185
Bst2UI CCWGG 3 cut(s) 54, 692, 854
Bst4CI ACNGT 4 cut(s) 122, 614, 634, 752
BstDEI CTNAG 3 cut(s) 436, 462, 900
BstF5I GGATG 2 cut(s) 700, 770
BstHHI GCGC 1 cut(s) 927
BstKTI GATC 1 cut(s) 682
BstMBI GATC 1 cut(s) 679
BstMWI GCNNNNNNNGC 2 cut(s) 278, 924
BstNI CCWGG 3 cut(s) 54, 692, 854
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 3 cut(s) 52, 690, 852
BstV1I GCAGC 4 cut(s) 741, 744, 939, 961
BstV2I GAAGAC 1 cut(s) 356
BstXI CCANNNNNNTGG 1 cut(s) 860
BsuRI GGCC 1 cut(s) 326
BtgZI GCGATG 1 cut(s) 630
BtsCI GGATG 2 cut(s) 700, 770
BtsIMutI CAGTG 2 cut(s) 127, 619
CfoI GCGC 1 cut(s) 927
Csp6I GTAC 4 cut(s) 217, 286, 415, 850
CviAII CATG 3 cut(s) 406, 410, 650
CviQI GTAC 4 cut(s) 217, 286, 415, 850
DdeI CTNAG 3 cut(s) 436, 462, 900
DpnI GATC 1 cut(s) 681
DpnII GATC 1 cut(s) 679
EciI GGCGGA 2 cut(s) 554, 588
Eco130I CCWWGG 2 cut(s) 173, 185
Eco24I GRGCYC 2 cut(s) 379, 548
Eco57I CTGAAG 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 560
EcoRII CCWGG 3 cut(s) 52, 690, 852
EcoT14I CCWWGG 2 cut(s) 173, 185
EcoT22I ATGCAT 1 cut(s) 411
EcoT38I GRGCYC 2 cut(s) 379, 548
ErhI CCWWGG 2 cut(s) 173, 185
FaeI CATG 3 cut(s) 409, 413, 653
FaqI GGGAC 1 cut(s) 248
FatI CATG 3 cut(s) 405, 409, 649
Fnu4HI GCNGC 4 cut(s) 730, 733, 928, 975
FokI GGATG 2 cut(s) 707, 757
FriOI GRGCYC 2 cut(s) 379, 548
Fsp4HI GCNGC 4 cut(s) 730, 733, 928, 975
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 926
GluI GCNGC 4 cut(s) 730, 733, 928, 975
GsaI CCCAGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 326
HapII CCGG 1 cut(s) 837
HhaI GCGC 1 cut(s) 927
Hin1II CATG 3 cut(s) 409, 413, 653
Hin6I GCGC 1 cut(s) 925
HinP1I GCGC 1 cut(s) 925
HincII GTYRAC 1 cut(s) 897
HindII GTYRAC 1 cut(s) 897
HindIII AAGCTT 1 cut(s) 916
HinfI GANTC 5 cut(s) 57, 352, 593, 857, 992
HpaII CCGG 1 cut(s) 837
HphI GGTGA 7 cut(s) 59, 121, 215, 398, 487, 547, 650
Hpy166II GTNNAC 1 cut(s) 897
Hpy188I TCNGA 4 cut(s) 62, 554, 667, 684
Hpy188III TCNNGA 3 cut(s) 116, 953, 1000
Hpy8I GTNNAC 1 cut(s) 897
Hpy99I CGWCG 1 cut(s) 638
HpyAV CCTTC 4 cut(s) 103, 366, 419, 579
HpyCH4III ACNGT 4 cut(s) 122, 614, 634, 752
HpyCH4V TGCA 6 cut(s) 409, 483, 671, 799, 847, 871
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 924
HpyF3I CTNAG 3 cut(s) 436, 462, 900
Hsp92II CATG 3 cut(s) 409, 413, 653
HspAI GCGC 1 cut(s) 925
Kzo9I GATC 1 cut(s) 679
LmnI GCTCC 3 cut(s) 382, 916, 982
Lsp1109I GCAGC 4 cut(s) 741, 744, 939, 961
LweI GCATC 1 cut(s) 658
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 614
MalI GATC 1 cut(s) 681
MboI GATC 1 cut(s) 679
MboII GAAGA 6 cut(s) 41, 92, 358, 361, 523, 759
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 2 cut(s) 379, 548
MluCI AATT 6 cut(s) 44, 141, 486, 560, 937, 1003
MlyI GAGTC 2 cut(s) 346, 851
MmeI TCCRAC 2 cut(s) 319, 840
Mph1103I ATGCAT 1 cut(s) 411
MseI TTAA 2 cut(s) 24, 257
MspI CCGG 1 cut(s) 837
MspR9I CCNGG 3 cut(s) 54, 692, 854
MunI CAATTG 1 cut(s) 141
MvaI CCWGG 3 cut(s) 54, 692, 854
MwoI GCNNNNNNNGC 2 cut(s) 278, 924
NdeII GATC 1 cut(s) 679
NlaIII CATG 3 cut(s) 409, 413, 653
NlaIV GGNNCC 1 cut(s) 378
NmeAIII GCCGAG 1 cut(s) 950
NmuCI GTSAC 1 cut(s) 614
NsiI ATGCAT 1 cut(s) 411
NspI RCATGY 1 cut(s) 653
PfeI GAWTC 3 cut(s) 57, 593, 992
PfoI TCCNGGA 1 cut(s) 52
PkrI GCNGC 4 cut(s) 731, 734, 929, 976
PleI GAGTC 2 cut(s) 346, 851
PpsI GAGTC 2 cut(s) 346, 851
PshBI ATTAAT 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 52, 690, 852
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 3 cut(s) 52, 690, 852
PspN4I GGNNCC 1 cut(s) 378
RsaI GTAC 4 cut(s) 218, 287, 416, 851
RsaNI GTAC 4 cut(s) 217, 286, 415, 850
SaqAI TTAA 2 cut(s) 24, 257
SatI GCNGC 4 cut(s) 730, 733, 928, 975
Sau3AI GATC 1 cut(s) 679
SchI GAGTC 2 cut(s) 346, 851
ScrFI CCNGG 3 cut(s) 54, 692, 854
SduI GDGCHC 2 cut(s) 379, 548
SfaNI GCATC 1 cut(s) 658
SmlI CTYRAG 2 cut(s) 906, 919
SmoI CTYRAG 2 cut(s) 906, 919
Sse9I AATT 6 cut(s) 44, 141, 486, 560, 937, 1003
SsiI CCGC 3 cut(s) 132, 565, 599
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 52, 690, 852
StyI CCWWGG 2 cut(s) 173, 185
TaaI ACNGT 4 cut(s) 122, 614, 634, 752
TaqI TCGA 1 cut(s) 705
TasI AATT 6 cut(s) 44, 141, 486, 560, 937, 1003
TatI WGTACW 1 cut(s) 414
TfiI GAWTC 3 cut(s) 57, 593, 992
Tru1I TTAA 2 cut(s) 24, 257
Tru9I TTAA 2 cut(s) 24, 257
TscAI CASTG 2 cut(s) 127, 619
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 4 cut(s) 729, 732, 927, 974
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 4 cut(s) 42, 93, 359, 759
TspGWI ACGGA 1 cut(s) 771
TspRI CASTG 2 cut(s) 127, 619
VspI ATTAAT 1 cut(s) 24
XapI RAATTY 2 cut(s) 486, 560
XceI RCATGY 1 cut(s) 653
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XspI CTAG 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.