Rh2DG620100
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011691
Physical Location & Seq
Reverse (-)
85066302 .. 85066865
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG620100.1

Sequence Viewer

Length: 564 bp
ATGGTTTCGTATGGTTTTCAGAATGAGTGGGTGATTTGCAGAATTTTCCAAAAGTGTAGTGGTGGGAAGAAAACTCATATTTCGGGGTTGGTGAGGGAGAGCCCTTTCGGAAACGAATTCCGCCCTTCTTTCCTGCCACCACTAATGGATTCTCCACCCTACAACAACAGTGACACAAGAACCACCACCGTCGGTGAAACATCGCATGTGTCCTGCTTCTCCGATGCAATGGAGGATCAGAAAACCCAGGATGACATTATCGACAGCTTCAACAACAACAATATCAGCAGCTGCAACAACAACAGTCATCTGTTAGCTTCTTCATCCTCATTTCCGTTCAAGTCCTCGGTGCAGAACTCTTACTTCTCCGACCAAATCGCACCAAACACCGGAAATATGCAGTACCCGGACTCTGGTTTTATGCAAGACCAGTCTATAATGAGGTTGTTGACTGAGCCTCAAGATCCAAGCTTGAGGCGCAGCTCATCAAATTATTTGGGGGGTCAAGATGTTCCATCATACTCAGCTGCTCCAATAGAGTTTGATTCCATCTGGAATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007568 GO:0007569 GO:0008150 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044093 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0046677 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:0090398 GO:0090400 GO:0090693 GO:0090696 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900140 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:1904248 GO:1904250 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

187

Amino Acids

20.92

Weight (kDa)

4.68

Isoelectric Point (pI)

62.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011691)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39610
fragaria_vesca FvH4_6g48120
malus_domestica MD09G1053700.v1.1 MD17G1051600.v1.1
prunus_persica Prupe.3G264600_v2.0.a1
pyrus_communis pycom111g04470 pycom17g04870
rosa_chinensis RchiOBHm_Chr2g0167461
rosa_laevigata RLG00000021720
rosa_multiflora Rmu_sc0001206.1_g000039 Rmu_sc0019611.1_g000001
rosa_roxburghii Rroxscaffold_2G00083490
rosa_rugosa Rorug02G0530400
rosa_samantha Rh2AG597500 Rh2BG608900 Rh2CG579800 Rh2DG620100 Rh7BG045200
rosa_wichuraiana Rw2G049720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 121
AclWI GGATC 2 cut(s) 243, 458
AcsI RAATTY 2 cut(s) 42, 116
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 389, 413
AgsI TTSAA 2 cut(s) 271, 340
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 6 cut(s) 267, 291, 317, 471, 483, 527
AluI AGCT 6 cut(s) 267, 291, 317, 471, 483, 527
AlwI GGATC 2 cut(s) 243, 458
AlwNI CAGNNNCTG 1 cut(s) 291
ApeKI GCWGC 4 cut(s) 288, 291, 480, 527
ApoI RAATTY 2 cut(s) 42, 116
AspLEI GCGC 1 cut(s) 480
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 3 cut(s) 43, 103, 206
BanII GRGCYC 1 cut(s) 104
BbvI GCAGC 4 cut(s) 278, 300, 492, 514
BccI CCATC 2 cut(s) 523, 557
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 1 cut(s) 407
BisI GCNGC 4 cut(s) 289, 292, 481, 528
BlsI GCNGC 4 cut(s) 290, 293, 482, 529
Bme1390I CCNGG 2 cut(s) 248, 407
BmrFI CCNGG 2 cut(s) 248, 407
BmsI GCATC 1 cut(s) 214
BpuEI CTTGAG 2 cut(s) 444, 493
BpuMI CCSGG 1 cut(s) 407
BsaJI CCNNGG 2 cut(s) 246, 345
BsaWI WCCGGW 1 cut(s) 389
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 413
Bse1I ACTGG 1 cut(s) 430
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 246, 345
BseGI GGATG 2 cut(s) 256, 323
BseLI CCNNNNNNNGG 2 cut(s) 389, 413
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 2 cut(s) 444, 537
BseNI ACTGG 1 cut(s) 430
BseXI GCAGC 4 cut(s) 278, 300, 492, 514
BsgI GTGCAG 1 cut(s) 371
BsiSI CCGG 2 cut(s) 390, 407
BslI CCNNNNNNNGG 2 cut(s) 389, 413
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 235, 463
BspACI CCGC 1 cut(s) 121
BspCNI CTCAG 2 cut(s) 445, 536
BspPI GGATC 2 cut(s) 243, 458
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 1 cut(s) 430
BssECI CCNNGG 2 cut(s) 246, 345
BssMI GATC 2 cut(s) 235, 463
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 3 cut(s) 170, 190, 305
BstDEI CTNAG 2 cut(s) 453, 523
BstF5I GGATG 2 cut(s) 256, 323
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 2 cut(s) 238, 466
BstMBI GATC 2 cut(s) 235, 463
BstMWI GCNNNNNNNGC 1 cut(s) 477
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 246, 405
BstV1I GCAGC 4 cut(s) 278, 300, 492, 514
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 2 cut(s) 256, 323
BtsIMutI CAGTG 1 cut(s) 175
CaiI CAGNNNCTG 1 cut(s) 291
CfoI GCGC 1 cut(s) 480
Csp6I GTAC 1 cut(s) 403
CviAII CATG 1 cut(s) 206
CviJI RGCY 8 cut(s) 102, 267, 291, 317, 457, 471, 483, 527
CviKI_1 RGCY 8 cut(s) 102, 267, 291, 317, 457, 471, 483, 527
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 2 cut(s) 453, 523
DpnI GATC 2 cut(s) 237, 465
DpnII GATC 2 cut(s) 235, 463
EciI GGCGGA 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 104
FaeI CATG 1 cut(s) 209
FaiI YATR 7 cut(s) 12, 78, 207, 398, 422, 437, 520
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 4 cut(s) 289, 292, 481, 528
FokI GGATG 2 cut(s) 263, 310
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 4 cut(s) 289, 292, 481, 528
GlaI GCGC 1 cut(s) 479
GluI GCNGC 4 cut(s) 289, 292, 481, 528
HapII CCGG 2 cut(s) 390, 407
HhaI GCGC 1 cut(s) 480
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HindIII AAGCTT 1 cut(s) 469
HinfI GANTC 3 cut(s) 149, 410, 545
HpaII CCGG 2 cut(s) 390, 407
HphI GGTGA 3 cut(s) 43, 103, 206
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 5 cut(s) 21, 110, 223, 240, 370
Hpy188III TCNNGA 3 cut(s) 461, 506, 553
Hpy8I GTNNAC 1 cut(s) 450
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 3 cut(s) 170, 190, 305
HpyCH4V TGCA 6 cut(s) 39, 227, 294, 352, 400, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 477
HpyF3I CTNAG 2 cut(s) 453, 523
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 478
Kzo9I GATC 2 cut(s) 235, 463
LmnI GCTCC 1 cut(s) 535
LpnPI CCDG 9 cut(s) 146, 226, 233, 260, 399, 403, 420, 443, 538
Lsp1109I GCAGC 4 cut(s) 278, 300, 492, 514
LweI GCATC 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 237, 465
MboI GATC 2 cut(s) 235, 463
MboII GAAGA 2 cut(s) 79, 312
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 4 cut(s) 42, 116, 490, 556
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 7 cut(s) 87, 226, 337, 355, 435, 468, 468
MspA1I CMGCKG 2 cut(s) 291, 527
MspI CCGG 2 cut(s) 390, 407
MspR9I CCNGG 2 cut(s) 248, 407
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 477
NciI CCSGG 1 cut(s) 407
NdeII GATC 2 cut(s) 235, 463
NlaIII CATG 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 170
NspI RCATGY 1 cut(s) 209
PfeI GAWTC 2 cut(s) 149, 545
PkrI GCNGC 4 cut(s) 290, 293, 482, 529
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PstNI CAGNNNCTG 1 cut(s) 291
PsuI RGATCY 1 cut(s) 463
PvuII CAGCTG 2 cut(s) 291, 527
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SatI GCNGC 4 cut(s) 289, 292, 481, 528
Sau3AI GATC 2 cut(s) 235, 463
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 2 cut(s) 248, 407
SduI GDGCHC 1 cut(s) 104
SetI ASST 7 cut(s) 269, 293, 319, 446, 473, 485, 529
SfaNI GCATC 1 cut(s) 214
SmlI CTYRAG 2 cut(s) 459, 472
SmoI CTYRAG 2 cut(s) 459, 472
Sse9I AATT 4 cut(s) 42, 116, 490, 556
SsiI CCGC 1 cut(s) 121
StyD4I CCNGG 2 cut(s) 246, 405
TaaI ACNGT 3 cut(s) 170, 190, 305
TaqI TCGA 1 cut(s) 261
TasI AATT 4 cut(s) 42, 116, 490, 556
TfiI GAWTC 2 cut(s) 149, 545
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 4 cut(s) 288, 291, 480, 527
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 312
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 175
XapI RAATTY 2 cut(s) 42, 116
XceI RCATGY 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.