AT5G40020

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012284
Physical Location & Seq
Reverse (-)
16022579 .. 16024316
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40020.1

Sequence Viewer

Length: 771 bp
ATGAAATTCCAGTCTACCTCCTTGTTACAACTTTTCATAATATCGAGTTGTATAGTATATGGCAAAGTAACAAGCCATGAGGTAACGTTTTACGTGCAAAATAAATGTTCATTTCCGATTTGGCCGGCCGTTGCCCCAAACTCCGGCCATCCGGTGCTAGCCTCTGGTGGATTTTATCTGCCATGCGGAGGTATTAAACGCATTGATGCTCCTTTGGGTTGGAGTGGTCGCATTTGGGCTAGAACAGGCTGTGACTTCACTTCAAACTCGAAACAAGCTTGTGAAACAGGTGATTGTGATGGACATCTGGAGTGTAATGGATTAATCGGAAAACCTCCGGCAACACTTATTCAAATTGCGGTACAAGCCGACAAATCCAAACCTAATTTCTACGATGTAAGCCTCGTGGACGGTTATAATCTTCCCGTCGTAGTGAACTCGAAACCCGTATCATCCAAATGCACCATCTTAGGGTGCCATAAAGATCTCAAAACCACATGTCCTGAAGAACTACAGGTTTTGAACGAAGAGGGACGAGTTGTGGCGTGCAAGAGTGCATGTTTAGCGTTTGATAACGACAGATTTTGTTGCCGGAATGCATATGGAACGCCGGAAAAGTGCAAAAGAAACACGTACTCTATGTTGTTTAAAGAAGCTTGTCCCAACTATTACAGTTATGCCTACGAGACACCTCCTCCTTTGGTCACTTGCTCCGCCAAGGAATATCTTATCACGTTTTGTCCATCAAACTGGGGCCATAGTTCCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

256

Amino Acids

28.09

Weight (kDa)

8.05

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 34 - 248 9.7e-77 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40020
fragaria_vesca FvH4_6g49590
malus_domestica MD09G1043300.v1.1 MD17G1044800.v1.1
prunus_persica Prupe.3G274400_v2.0.a1
pyrus_communis pycom111g03390 pycom17g03960
rosa_chinensis RchiOBHm_Chr2g0169621
rosa_laevigata RLG00000021888
rosa_multiflora Rmu_sc0023940.1_g000005 Rmu_sc0023940.1_g000006
rosa_roxburghii Rroxscaffold_2G00081950
rosa_rugosa Rorug02G0541500
rosa_samantha Rh2AG613900 Rh2BG626100 Rh2CG595400 Rh2DG637000
rosa_wichuraiana Rw0G022920 Rw2G050870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
AccB1I GGYRCC 1 cut(s) 474
AccI GTMKAC 1 cut(s) 14
AciI CCGC 3 cut(s) 186, 359, 714
AclI AACGTT 1 cut(s) 86
AcoI YGGCCR 3 cut(s) 122, 126, 145
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 525
AfaI GTAC 2 cut(s) 363, 635
AfiI CCNNNNNNNGG 3 cut(s) 143, 188, 471
AflIII ACRYGT 2 cut(s) 497, 630
AgsI TTSAA 3 cut(s) 264, 353, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 2 cut(s) 278, 656
AluI AGCT 2 cut(s) 278, 656
Alw26I GTCTC 1 cut(s) 680
AoxI GGCC 4 cut(s) 122, 126, 145, 754
ApoI RAATTY 1 cut(s) 5
AseI ATTAAT 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 754
AsuHPI GGTGA 1 cut(s) 302
AsuNHI GCTAGC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 474
BauI CACGAG 1 cut(s) 404
BccI CCATC 4 cut(s) 156, 293, 473, 751
BceAI ACGGC 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 680
BfaI CTAG 2 cut(s) 158, 240
BfmI CTRYAG 1 cut(s) 512
BglII AGATCT 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 754
BmiI GGNNCC 2 cut(s) 476, 755
BmrI ACTGGG 1 cut(s) 760
BmsI GCATC 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 161
BmuI ACTGGG 1 cut(s) 760
BpmI CTGGAG 1 cut(s) 329
BsaAI YACGTR 3 cut(s) 94, 633, 768
BsaBI GATNNNNATC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 717
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 679, 709
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 188, 471
Bse118I RCCGGY 1 cut(s) 124
Bse1I ACTGG 2 cut(s) 10, 755
Bse8I GATNNNNATC 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 717
BseGI GGATG 2 cut(s) 148, 452
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 3 cut(s) 143, 188, 471
BseNI ACTGG 2 cut(s) 10, 755
BseRI GAGGAG 1 cut(s) 684
BseX3I CGGCCG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 4 cut(s) 124, 128, 147, 756
BshNI GGYRCC 1 cut(s) 474
BsiEI CGRYCG 1 cut(s) 129
BsiSI CCGG 6 cut(s) 125, 144, 152, 338, 592, 611
BslFI GGGAC 2 cut(s) 546, 645
BslI CCNNNNNNNGG 3 cut(s) 143, 188, 471
BsmAI GTCTC 1 cut(s) 680
BsmFI GGGAC 2 cut(s) 546, 645
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 4 cut(s) 124, 128, 147, 756
Bsp143I GATC 1 cut(s) 484
BspACI CCGC 3 cut(s) 186, 359, 714
BspANI GGCC 4 cut(s) 124, 128, 147, 756
BspLI GGNNCC 2 cut(s) 476, 755
BspOI GCTAGC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 124
BsrI ACTGG 2 cut(s) 10, 755
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 1 cut(s) 484
BssSI CACGAG 1 cut(s) 404
BssT1I CCWWGG 1 cut(s) 717
Bst2BI CACGAG 1 cut(s) 404
Bst4CI ACNGT 2 cut(s) 413, 674
Bst6I CTCTTC 1 cut(s) 522
BstBAI YACGTR 3 cut(s) 94, 633, 768
BstC8I GCNNGC 3 cut(s) 126, 159, 547
BstDEI CTNAG 1 cut(s) 469
BstF5I GGATG 2 cut(s) 148, 452
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 1 cut(s) 680
BstMBI GATC 1 cut(s) 484
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 365, 563
BstNSI RCATGY 2 cut(s) 501, 561
BstSFI CTRYAG 1 cut(s) 512
BstX2I RGATCY 1 cut(s) 484
BstXI CCANNNNNNTGG 1 cut(s) 750
BstYI RGATCY 1 cut(s) 484
BstZI CGGCCG 1 cut(s) 126
BsuRI GGCC 4 cut(s) 124, 128, 147, 756
BtsCI GGATG 2 cut(s) 148, 452
Cac8I GCNNGC 3 cut(s) 126, 159, 547
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 754
Csp6I GTAC 2 cut(s) 362, 634
CviAII CATG 4 cut(s) 77, 183, 498, 558
CviQI GTAC 2 cut(s) 362, 634
DdeI CTNAG 1 cut(s) 469
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
DraI TTTAAA 1 cut(s) 649
EaeI YGGCCR 3 cut(s) 122, 126, 145
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
EciI GGCGGA 1 cut(s) 703
EclXI CGGCCG 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 717
Eco52I CGGCCG 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 717
EcoT22I ATGCAT 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 717
FaeI CATG 4 cut(s) 80, 186, 501, 561
FaqI GGGAC 2 cut(s) 546, 645
FatI CATG 4 cut(s) 76, 182, 497, 557
FauNDI CATATG 1 cut(s) 601
FblI GTMKAC 1 cut(s) 14
FokI GGATG 2 cut(s) 135, 439
FseI GGCCGGCC 1 cut(s) 128
FspBI CTAG 2 cut(s) 158, 240
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 4 cut(s) 124, 128, 147, 756
HapII CCGG 6 cut(s) 125, 144, 152, 338, 592, 611
Hin1II CATG 4 cut(s) 80, 186, 501, 561
HindIII AAGCTT 2 cut(s) 276, 654
HpaII CCGG 6 cut(s) 125, 144, 152, 338, 592, 611
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 3 cut(s) 15, 409, 436
Hpy188I TCNGA 2 cut(s) 117, 329
Hpy188III TCNNGA 2 cut(s) 308, 503
Hpy8I GTNNAC 3 cut(s) 15, 409, 436
Hpy99I CGWCG 1 cut(s) 431
HpyCH4III ACNGT 2 cut(s) 413, 674
HpyCH4IV ACGT 5 cut(s) 86, 93, 632, 734, 767
HpyCH4V TGCA 6 cut(s) 97, 462, 549, 557, 599, 621
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 563
HpyF3I CTNAG 1 cut(s) 469
HpySE526I ACGT 5 cut(s) 86, 93, 632, 734, 767
Hsp92II CATG 4 cut(s) 80, 186, 501, 561
KroI GCCGGC 1 cut(s) 124
KroNI GCCGGC 1 cut(s) 126
Kzo9I GATC 1 cut(s) 484
LmnI GCTCC 2 cut(s) 214, 716
LweI GCATC 1 cut(s) 196
MaeI CTAG 2 cut(s) 158, 240
MaeII ACGT 5 cut(s) 86, 93, 632, 734, 767
MaeIII GTNAC 5 cut(s) 24, 67, 82, 251, 703
MalI GATC 1 cut(s) 486
MboI GATC 1 cut(s) 484
MboII GAAGA 3 cut(s) 413, 518, 539
MflI RGATCY 1 cut(s) 484
MluCI AATT 3 cut(s) 5, 354, 385
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 9 cut(s) 28, 73, 172, 182, 345, 413, 523, 702, 705
Mph1103I ATGCAT 1 cut(s) 601
MroNI GCCGGC 1 cut(s) 124
MseI TTAA 3 cut(s) 195, 323, 648
MslI CAYNNNNRTG 1 cut(s) 457
MspI CCGG 6 cut(s) 125, 144, 152, 338, 592, 611
Mva1269I GAATGC 1 cut(s) 601
MwoI GCNNNNNNNGC 2 cut(s) 365, 563
NaeI GCCGGC 1 cut(s) 126
NdeI CATATG 1 cut(s) 601
NdeII GATC 1 cut(s) 484
NgoMIV GCCGGC 1 cut(s) 124
NheI GCTAGC 1 cut(s) 157
NlaIII CATG 4 cut(s) 80, 186, 501, 561
NlaIV GGNNCC 2 cut(s) 476, 755
NmuCI GTSAC 2 cut(s) 251, 703
NsiI ATGCAT 1 cut(s) 601
NspI RCATGY 2 cut(s) 501, 561
PciI ACATGT 1 cut(s) 497
PctI GAATGC 1 cut(s) 601
PdiI GCCGGC 1 cut(s) 126
Ppu21I YACGTR 3 cut(s) 94, 633, 768
PscI ACATGT 1 cut(s) 497
PshBI ATTAAT 1 cut(s) 323
PsiI TTATAA 1 cut(s) 417
Psp1406I AACGTT 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 476, 755
PspPI GGNCC 1 cut(s) 754
PsuI RGATCY 1 cut(s) 484
RigI GGCCGGCC 1 cut(s) 128
RsaI GTAC 2 cut(s) 363, 635
RsaNI GTAC 2 cut(s) 362, 634
RseI CAYNNNNRTG 1 cut(s) 457
SaqAI TTAA 3 cut(s) 195, 323, 648
Sau3AI GATC 1 cut(s) 484
Sau96I GGNCC 1 cut(s) 754
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 512
SmiMI CAYNNNNRTG 1 cut(s) 457
Sse9I AATT 3 cut(s) 5, 354, 385
SsiI CCGC 3 cut(s) 186, 359, 714
SspMI CTAG 2 cut(s) 158, 240
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 2 cut(s) 413, 674
TaiI ACGT 5 cut(s) 89, 96, 635, 737, 770
TaqI TCGA 3 cut(s) 44, 269, 440
TasI AATT 3 cut(s) 5, 354, 385
Tru1I TTAA 3 cut(s) 195, 323, 648
Tru9I TTAA 3 cut(s) 195, 323, 648
TseFI GTSAC 2 cut(s) 251, 703
Tsp45I GTSAC 2 cut(s) 251, 703
TspDTI ATGAA 3 cut(s) 17, 25, 99
VspI ATTAAT 1 cut(s) 323
XapI RAATTY 1 cut(s) 5
XceI RCATGY 2 cut(s) 501, 561
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 2 cut(s) 158, 240
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.