MD17G1044800.v1.1

thaumatin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012284
Physical Location & Seq
Forward (+)
3248008 .. 3248988
981 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1044800.v1.1.491

Sequence Viewer

Length: 783 bp
ATGAAGTTGCCTGACTCTGTTGCCGCTTTCTTTCTGCTCCTACTGTGGACTTTCATGTTATTTGGACAGGGAATGGCACATACAGTTACATTTTACATACAGAATAAGTGCCCCTTCCCCATATGGCCAGCGACTGCCCCCAACACCGGAGAGCCTGTGATAGCTGATGGCGGCTTCTTCCTCCCCGCCGGACATACTCAGCCCATTACTGCCCCGTGGTCATGGAGCGGTCGGATTTGGGCCCGAACAGGATGCGACTTTGTCTCCAACTGCAAGCCTGCTTGCGAAACAGGAGATTGTGGCGGACGATTAGCATGCAATGGACTAATAGGCAATCCACCGGTGACACTAGTGGAAGTTTCGCTTCAAGACGACAAAGGCAAGCCAAATTTCTACGCTGTGAGCGTGGTTGATGGATATAATCTTCCGGTTGCAATCTTATCAAGGCCGGCGGCATCCAATTGCGCTGTCAGAGGGTGTTTGAAAGATTTGAAAACTTGTTGCCCCGATGAGCTGAAGGTTTTAAACGACGAAGGGGAAGTTGTGGCGTGCAAAAGTGCTTGTTTGGCGTTTGATACGGACTCGTTTTGTTGCCGGAATAAGTATGGAACCCCGGAAAAATGCAAGCCGAGTGTGTACTCGAAGATATTCAAAGATGCTTGCCCTTCGTATTACAGCTATGCTTATGATTCACCACCTCCATTGGTGACTTGCAAGGCAAGCGAGTATGTGATCACATTTTGTCCTGCAGGGTGGGGTGCTGCTGGGTATACCTCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

261

Amino Acids

28.05

Weight (kDa)

6.11

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 35 - 249 1e-76 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40020
fragaria_vesca FvH4_6g49590
malus_domestica MD09G1043300.v1.1 MD17G1044800.v1.1
prunus_persica Prupe.3G274400_v2.0.a1
pyrus_communis pycom111g03390 pycom17g03960
rosa_chinensis RchiOBHm_Chr2g0169621
rosa_laevigata RLG00000021888
rosa_multiflora Rmu_sc0023940.1_g000005 Rmu_sc0023940.1_g000006
rosa_roxburghii Rroxscaffold_2G00081950
rosa_rugosa Rorug02G0541500
rosa_samantha Rh2AG613900 Rh2BG626100 Rh2CG595400 Rh2DG637000
rosa_wichuraiana Rw0G022920 Rw2G050870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 228
AccI GTMKAC 1 cut(s) 770
AciI CCGC 6 cut(s) 24, 171, 186, 228, 303, 452
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 388
AcuI CTGAAG 1 cut(s) 536
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 1 cut(s) 146
AgeI ACCGGT 1 cut(s) 340
AgsI TTSAA 4 cut(s) 368, 484, 493, 652
AhlI ACTAGT 1 cut(s) 349
AluBI AGCT 3 cut(s) 164, 514, 678
AluI AGCT 3 cut(s) 164, 514, 678
Alw26I GTCTC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 3 cut(s) 125, 240, 446
ApaI GGGCCC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 761
ApoI RAATTY 1 cut(s) 388
AsiGI ACCGGT 1 cut(s) 340
Asp700I GAANNNNTTC 1 cut(s) 647
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 240, 241
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 3 cut(s) 355, 684, 718
BaeGI GKGCMC 2 cut(s) 113, 244
BalI TGGCCA 1 cut(s) 127
BanII GRGCYC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 748
BccI CCATC 2 cut(s) 161, 407
BcgI CGANNNNNNTGC 4 cut(s) 234, 268, 297, 331
BclI TGATCA 1 cut(s) 732
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 1 cut(s) 268
BcuI ACTAGT 1 cut(s) 349
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 747
BisI GCNGC 4 cut(s) 24, 172, 453, 762
BlsI GCNGC 4 cut(s) 25, 173, 454, 763
Bme1390I CCNGG 1 cut(s) 614
BmgT120I GGNCC 2 cut(s) 240, 241
BmiI GGNNCC 2 cut(s) 242, 610
BmrFI CCNGG 1 cut(s) 614
BmsI GCATC 3 cut(s) 242, 464, 646
BpuMI CCSGG 1 cut(s) 614
BsaJI CCNNGG 2 cut(s) 215, 612
BsaWI WCCGGW 3 cut(s) 146, 340, 427
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 248, 278
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 2 cut(s) 340, 448
Bse3DI GCAATG 1 cut(s) 325
BseDI CCNNGG 2 cut(s) 215, 612
BseGI GGATG 2 cut(s) 257, 455
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 212
BseSI GKGCMC 2 cut(s) 113, 244
BseXI GCAGC 1 cut(s) 748
BseYI CCCAGC 1 cut(s) 764
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 3 cut(s) 127, 242, 448
BshTI ACCGGT 1 cut(s) 340
BsiEI CGRYCG 1 cut(s) 232
BsiSI CCGG 7 cut(s) 147, 189, 341, 428, 449, 595, 614
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 268
BsnI GGCC 3 cut(s) 127, 242, 448
Bsp120I GGGCCC 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 113, 244
Bsp143I GATC 1 cut(s) 732
BspACI CCGC 6 cut(s) 24, 171, 186, 228, 303, 452
BspANI GGCC 3 cut(s) 127, 242, 448
BspCNI CTCAG 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 242, 610
BspMAI CTGCAG 1 cut(s) 751
BsrBI CCGCTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 325
BsrFI RCCGGY 2 cut(s) 340, 448
BssAI RCCGGY 2 cut(s) 340, 448
BssECI CCNNGG 2 cut(s) 215, 612
BssMI GATC 1 cut(s) 732
BssNAI GTATAC 1 cut(s) 771
Bst1107I GTATAC 1 cut(s) 771
Bst4CI ACNGT 2 cut(s) 45, 85
BstDEI CTNAG 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 215
BstF5I GGATG 2 cut(s) 257, 455
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 1 cut(s) 735
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 1 cut(s) 732
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 566, 720
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 612
BstSFI CTRYAG 1 cut(s) 747
BstSLI GKGCMC 2 cut(s) 113, 244
BstV1I GCAGC 1 cut(s) 748
BstZ17I GTATAC 1 cut(s) 771
BsuRI GGCC 3 cut(s) 127, 242, 448
BtgI CCRYGG 1 cut(s) 215
BtsCI GGATG 2 cut(s) 257, 455
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 1 cut(s) 467
Cfr10I RCCGGY 2 cut(s) 340, 448
Cfr13I GGNCC 2 cut(s) 240, 241
Csp6I GTAC 1 cut(s) 637
CspAI ACCGGT 1 cut(s) 340
CspCI CAANNNNNGTGG 2 cut(s) 684, 719
CviAII CATG 3 cut(s) 55, 222, 315
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 734
DpnII GATC 1 cut(s) 732
DraI TTTAAA 1 cut(s) 525
EaeI YGGCCR 1 cut(s) 125
EciI GGCGGA 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 536
EcoT38I GRGCYC 1 cut(s) 244
FaeI CATG 3 cut(s) 58, 225, 318
FalI AAGNNNNNCTT 4 cut(s) 98, 130, 348, 380
FatI CATG 3 cut(s) 54, 221, 314
FauI CCCGC 1 cut(s) 193
FauNDI CATATG 1 cut(s) 122
FbaI TGATCA 1 cut(s) 732
FblI GTMKAC 1 cut(s) 770
Fnu4HI GCNGC 4 cut(s) 24, 172, 453, 762
FokI GGATG 2 cut(s) 264, 442
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 4 cut(s) 24, 172, 453, 762
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 466
GluI GCNGC 4 cut(s) 24, 172, 453, 762
GsaI CCCAGC 1 cut(s) 768
HaeIII GGCC 3 cut(s) 127, 242, 448
HapII CCGG 7 cut(s) 147, 189, 341, 428, 449, 595, 614
HhaI GCGC 1 cut(s) 467
Hin1II CATG 3 cut(s) 58, 225, 318
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HinfI GANTC 3 cut(s) 14, 581, 689
HpaII CCGG 7 cut(s) 147, 189, 341, 428, 449, 595, 614
HphI GGTGA 3 cut(s) 355, 684, 718
Hpy166II GTNNAC 3 cut(s) 48, 637, 771
Hpy188I TCNGA 2 cut(s) 234, 473
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 3 cut(s) 48, 637, 771
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 4 cut(s) 124, 511, 527, 675
HpyCH4III ACNGT 2 cut(s) 45, 85
HpyCH4V TGCA 7 cut(s) 273, 318, 434, 552, 624, 714, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 566, 720
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 3 cut(s) 58, 225, 318
HspAI GCGC 1 cut(s) 465
KroI GCCGGC 1 cut(s) 448
KroNI GCCGGC 1 cut(s) 450
Ksp22I TGATCA 1 cut(s) 732
Kzo9I GATC 1 cut(s) 732
LmnI GCTCC 2 cut(s) 42, 225
Lsp1109I GCAGC 1 cut(s) 748
LweI GCATC 3 cut(s) 242, 464, 646
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 3 cut(s) 85, 343, 706
MalI GATC 1 cut(s) 734
MbiI CCGCTC 1 cut(s) 228
MboI GATC 1 cut(s) 732
MboII GAAGA 3 cut(s) 169, 416, 655
MfeI CAATTG 1 cut(s) 460
MhlI GDGCHC 2 cut(s) 113, 244
MlsI TGGCCA 1 cut(s) 127
MluCI AATT 2 cut(s) 388, 460
MluNI TGGCCA 1 cut(s) 127
MlyI GAGTC 2 cut(s) 8, 575
MmeI TCCRAC 2 cut(s) 212, 291
MnlI CCTC 3 cut(s) 191, 467, 708
Mox20I TGGCCA 1 cut(s) 127
MroNI GCCGGC 1 cut(s) 448
MroXI GAANNNNTTC 1 cut(s) 647
MscI TGGCCA 1 cut(s) 127
MseI TTAA 1 cut(s) 524
Msp20I TGGCCA 1 cut(s) 127
MspI CCGG 7 cut(s) 147, 189, 341, 428, 449, 595, 614
MspR9I CCNGG 1 cut(s) 614
MunI CAATTG 1 cut(s) 460
MwoI GCNNNNNNNGC 2 cut(s) 566, 720
NaeI GCCGGC 1 cut(s) 450
NciI CCSGG 1 cut(s) 614
NdeI CATATG 1 cut(s) 122
NdeII GATC 1 cut(s) 732
NgoMIV GCCGGC 1 cut(s) 448
NlaIII CATG 3 cut(s) 58, 225, 318
NlaIV GGNNCC 2 cut(s) 242, 610
NmeAIII GCCGAG 1 cut(s) 654
NmuCI GTSAC 2 cut(s) 343, 706
NspI RCATGY 1 cut(s) 318
PaeI GCATGC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PdiI GCCGGC 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 647
PfeI GAWTC 1 cut(s) 689
PflFI GACNNNGTC 1 cut(s) 260
PinAI ACCGGT 1 cut(s) 340
PkrI GCNGC 4 cut(s) 25, 173, 454, 763
PleI GAGTC 2 cut(s) 8, 575
PpsI GAGTC 2 cut(s) 8, 575
PspFI CCCAGC 1 cut(s) 764
PspN4I GGNNCC 2 cut(s) 242, 610
PspOMI GGGCCC 1 cut(s) 240
PspPI GGNCC 2 cut(s) 240, 241
PstI CTGCAG 1 cut(s) 751
PstNI CAGNNNCTG 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 260
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 4 cut(s) 24, 172, 453, 762
Sau3AI GATC 1 cut(s) 732
Sau96I GGNCC 2 cut(s) 240, 241
SbfI CCTGCAGG 1 cut(s) 751
SchI GAGTC 2 cut(s) 8, 575
ScrFI CCNGG 1 cut(s) 614
SdaI CCTGCAGG 1 cut(s) 751
SduI GDGCHC 2 cut(s) 113, 244
SetI ASST 6 cut(s) 166, 516, 522, 680, 700, 776
SfaNI GCATC 3 cut(s) 242, 464, 646
SfcI CTRYAG 1 cut(s) 747
SgrAI CRCCGGYG 1 cut(s) 340
SpeI ACTAGT 1 cut(s) 349
SphI GCATGC 1 cut(s) 318
Sse8387I CCTGCAGG 1 cut(s) 751
Sse9I AATT 2 cut(s) 388, 460
SsiI CCGC 6 cut(s) 24, 171, 186, 228, 303, 452
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 612
TaaI ACNGT 2 cut(s) 45, 85
TaqI TCGA 1 cut(s) 641
TasI AATT 2 cut(s) 388, 460
TatI WGTACW 1 cut(s) 636
TauI GCSGC 3 cut(s) 26, 174, 455
TfiI GAWTC 1 cut(s) 689
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TseFI GTSAC 2 cut(s) 343, 706
TseI GCWGC 1 cut(s) 761
Tsp45I GTSAC 2 cut(s) 343, 706
TspDTI ATGAA 2 cut(s) 17, 43
TspGWI ACGGA 1 cut(s) 593
Tth111I GACNNNGTC 1 cut(s) 260
XapI RAATTY 1 cut(s) 388
XceI RCATGY 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 770
XmnI GAANNNNTTC 1 cut(s) 647
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.