Rroxscaffold_2G00081950

thaumatin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012284
Physical Location & Seq
Forward (+)
4882174 .. 4884853
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081950.1

Sequence Viewer

Length: 924 bp
ATGGGGGTGTGTCCGAGGTGGTCAAAGCGAAAGCGGGCGCGAAGGGAGCCGAGCATAGGGACCCAAATGGAGGATAGCCCTGGAGAATCAAAGATGTCATTTCCCAAATCAAATGACATTTCAATTCAGGAATGCATCAAAATCATGAAGCTACCAGTATTTGTTGCTTCTTTTCCTCTGTTTCTAACATGGAGTTCCATGTTATTTGGACATGGAGCAGCACAGACAGTTGCATTTAAAATACACAACAAGTGCCCCTTCCCCATATGGCCTGCAACTGCCCCCAACAATGGTCAACCGGTGATAGCTGATGGTGGCTTCTCCCTCCCGGCTAGCAAGACTAAGCGCATTACGGCCCCGGGGTCATGGAGCGGTCGGATTTGGGCCCGAACAGGATGCAACTTTGCCTCTAATAGGAGCCCTGCTTGTGAAACTGGAGACTGTGATGGAAGACTAGCATGCAATGGACTAATAGGCACTCCACCAGTGACATTGGTGCAAGTTGCGCTTCAAGCCGACAAAGGCAACCCAAATTCCTATGATGTGAGCGTGGTCGATGGATACAATCTTCCGGTTTCAGTCCTATCAAAGCCCGTAGCATCAAATTGTGCTATTAGTGGGTGCTTGAAAGACTTGAAAACTAGGTGTCCAGAAAAGCTTCGGGTTTTGAACAGCGCAGGGAAAGTAGTAGCTTGCAAAAGTGCCTGCTTGGCATTTAATAAGGACTCATATTGTTGCAGAAATCAGTATGGAACTCCAGATAAATGCAAGCCGAGTGAGTACTCCAAGATATTCAAAGATGCTTGTCCCTCTTATTATAGCTATGCTTATGATTCACCACCTCCATTGGTGAACTGCAAGGCCGACGAGTATTTGATTACCTTTTGTCCTTCAGGCTGGGGTGGTGAGCATACTTCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

307

Amino Acids

33.25

Weight (kDa)

9.0

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 83 - 297 1e-77 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40020
fragaria_vesca FvH4_6g49590
malus_domestica MD09G1043300.v1.1 MD17G1044800.v1.1
prunus_persica Prupe.3G274400_v2.0.a1
pyrus_communis pycom111g03390 pycom17g03960
rosa_chinensis RchiOBHm_Chr2g0169621
rosa_laevigata RLG00000021888
rosa_multiflora Rmu_sc0023940.1_g000005 Rmu_sc0023940.1_g000006
rosa_roxburghii Rroxscaffold_2G00081950
rosa_rugosa Rorug02G0541500
rosa_samantha Rh2AG613900 Rh2BG626100 Rh2CG595400 Rh2DG637000
rosa_wichuraiana Rw0G022920 Rw2G050870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 372
AccII CGCG 1 cut(s) 40
AciI CCGC 2 cut(s) 34, 372
AcsI RAATTY 1 cut(s) 532
AcuI CTGAAG 1 cut(s) 876
AfaI GTAC 1 cut(s) 782
AfiI CCNNNNNNNGG 4 cut(s) 56, 70, 290, 414
AgeI ACCGGT 1 cut(s) 298
AgsI TTSAA 6 cut(s) 123, 512, 628, 637, 670, 796
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 5 cut(s) 151, 308, 658, 692, 822
AluI AGCT 5 cut(s) 151, 308, 658, 692, 822
Alw26I GTCTC 1 cut(s) 432
Ama87I CYCGRG 1 cut(s) 358
AoxI GGCC 4 cut(s) 269, 354, 384, 861
ApaI GGGCCC 1 cut(s) 388
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 532
AsiGI ACCGGT 1 cut(s) 298
Asp700I GAANNNNTTC 1 cut(s) 657
AspLEI GCGC 4 cut(s) 40, 348, 508, 677
AspS9I GGNCC 4 cut(s) 60, 355, 384, 385
AsuC2I CCSGG 3 cut(s) 329, 359, 360
AsuHPI GGTGA 4 cut(s) 313, 828, 862, 917
AsuNHI GCTAGC 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 358
AvaII GGWCC 1 cut(s) 60
BaeGI GKGCMC 2 cut(s) 257, 388
BanII GRGCYC 2 cut(s) 388, 422
BbsI GAAGAC 1 cut(s) 457
BbvI GCAGC 1 cut(s) 230
BccI CCATC 3 cut(s) 305, 440, 551
BceAI ACGGC 1 cut(s) 369
BcgI CGANNNNNNTGC 2 cut(s) 378, 412
BciT130I CCWGG 1 cut(s) 81
BciVI GTATCC 1 cut(s) 554
BcnI CCSGG 3 cut(s) 329, 359, 360
BcoDI GTCTC 1 cut(s) 432
BfaI CTAG 3 cut(s) 333, 455, 642
BfuI GTATCC 1 cut(s) 554
BglI GCCNNNNNGGC 1 cut(s) 710
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmcAI AGTACT 1 cut(s) 782
Bme1390I CCNGG 4 cut(s) 81, 329, 359, 360
Bme18I GGWCC 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 358
BmgT120I GGNCC 4 cut(s) 60, 355, 384, 385
BmiI GGNNCC 6 cut(s) 48, 61, 62, 357, 386, 419
BmrFI CCNGG 4 cut(s) 81, 329, 359, 360
BmsI GCATC 4 cut(s) 144, 386, 608, 790
BmtI GCTAGC 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 457
BpmI CTGGAG 3 cut(s) 102, 456, 741
BpuMI CCSGG 3 cut(s) 329, 359, 360
BsaJI CCNNGG 5 cut(s) 14, 79, 357, 358, 359
BsaWI WCCGGW 2 cut(s) 298, 571
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 70, 290, 414
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 3 cut(s) 155, 439, 485
Bse3DI GCAATG 1 cut(s) 469
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 5 cut(s) 14, 79, 357, 358, 359
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 4 cut(s) 56, 70, 290, 414
BseMI GCAATG 1 cut(s) 469
BseNI ACTGG 3 cut(s) 155, 439, 485
BseSI GKGCMC 2 cut(s) 257, 388
BseXI GCAGC 1 cut(s) 230
BseYI CCCAGC 1 cut(s) 897
Bsh1236I CGCG 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 376
BshFI GGCC 4 cut(s) 271, 356, 386, 863
BshTI ACCGGT 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 376
BsiHKCI CYCGRG 1 cut(s) 358
BsiSI CCGG 4 cut(s) 299, 329, 359, 572
BslFI GGGAC 2 cut(s) 73, 792
BslI CCNNNNNNNGG 4 cut(s) 56, 70, 290, 414
BsmAI GTCTC 1 cut(s) 432
BsmFI GGGAC 2 cut(s) 73, 792
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 4 cut(s) 271, 356, 386, 863
BsoBI CYCGRG 1 cut(s) 358
Bsp120I GGGCCC 1 cut(s) 384
Bsp1286I GDGCHC 3 cut(s) 257, 388, 422
BspACI CCGC 2 cut(s) 34, 372
BspANI GGCC 4 cut(s) 271, 356, 386, 863
BspFNI CGCG 1 cut(s) 40
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 6 cut(s) 48, 61, 62, 357, 386, 419
BspOI GCTAGC 1 cut(s) 336
BsrBI CCGCTC 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 3 cut(s) 155, 439, 485
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 5 cut(s) 14, 79, 357, 358, 359
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 229, 443
BstC8I GCNNGC 7 cut(s) 36, 273, 334, 460, 694, 706, 770
BstDEI CTNAG 1 cut(s) 342
BstENI CCTNNNNNAGG 1 cut(s) 412
BstF5I GGATG 1 cut(s) 401
BstFNI CGCG 1 cut(s) 40
BstHHI GCGC 4 cut(s) 40, 348, 508, 677
BstMAI GTCTC 1 cut(s) 432
BstMCI CGRYCG 1 cut(s) 376
BstMWI GCNNNNNNNGC 4 cut(s) 46, 505, 512, 710
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 4 cut(s) 79, 327, 357, 358
BstSLI GKGCMC 2 cut(s) 257, 388
BstUI CGCG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 230
BstV2I GAAGAC 1 cut(s) 457
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 4 cut(s) 271, 356, 386, 863
BtsCI GGATG 1 cut(s) 401
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 7 cut(s) 36, 273, 334, 460, 694, 706, 770
CciI TCATGA 1 cut(s) 144
CfoI GCGC 4 cut(s) 40, 348, 508, 677
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 4 cut(s) 60, 355, 384, 385
Cfr9I CCCGGG 1 cut(s) 358
Csp6I GTAC 1 cut(s) 781
CspAI ACCGGT 1 cut(s) 298
CspCI CAANNNNNGTGG 2 cut(s) 828, 863
CviAII CATG 6 cut(s) 145, 189, 199, 212, 366, 459
CviQI GTAC 1 cut(s) 781
DdeI CTNAG 1 cut(s) 342
DraI TTTAAA 1 cut(s) 238
Eco24I GRGCYC 2 cut(s) 388, 422
Eco47I GGWCC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 876
Eco88I CYCGRG 1 cut(s) 358
EcoNI CCTNNNNNAGG 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 137
EcoT38I GRGCYC 2 cut(s) 388, 422
FaeI CATG 6 cut(s) 148, 192, 202, 215, 369, 462
FalI AAGNNNNNCTT 4 cut(s) 242, 274, 492, 524
FaqI GGGAC 2 cut(s) 73, 792
FatI CATG 6 cut(s) 144, 188, 198, 211, 365, 458
FauI CCCGC 1 cut(s) 27
FauNDI CATATG 1 cut(s) 266
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 408
FriOI GRGCYC 2 cut(s) 388, 422
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 3 cut(s) 333, 455, 642
GlaI GCGC 4 cut(s) 39, 347, 507, 676
GluI GCNGC 1 cut(s) 219
GsaI CCCAGC 1 cut(s) 901
GsuI CTGGAG 3 cut(s) 102, 456, 741
HaeIII GGCC 4 cut(s) 271, 356, 386, 863
HapII CCGG 4 cut(s) 299, 329, 359, 572
HhaI GCGC 4 cut(s) 40, 348, 508, 677
Hin1II CATG 6 cut(s) 148, 192, 202, 215, 369, 462
Hin6I GCGC 4 cut(s) 38, 346, 506, 675
HinP1I GCGC 4 cut(s) 38, 346, 506, 675
HincII GTYRAC 1 cut(s) 296
HindII GTYRAC 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 656
HinfI GANTC 3 cut(s) 86, 725, 833
HpaII CCGG 4 cut(s) 299, 329, 359, 572
HphI GGTGA 4 cut(s) 313, 828, 862, 917
Hpy166II GTNNAC 2 cut(s) 296, 853
Hpy188I TCNGA 2 cut(s) 15, 378
Hpy188III TCNNGA 4 cut(s) 128, 145, 650, 758
Hpy8I GTNNAC 2 cut(s) 296, 853
Hpy99I CGWCG 1 cut(s) 869
HpyAV CCTTC 3 cut(s) 36, 268, 900
HpyCH4III ACNGT 2 cut(s) 229, 443
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 505, 512, 710
HpyF3I CTNAG 1 cut(s) 342
Hsp92II CATG 6 cut(s) 148, 192, 202, 215, 369, 462
HspAI GCGC 4 cut(s) 38, 346, 506, 675
KflI GGGWCCC 1 cut(s) 60
LmnI GCTCC 4 cut(s) 46, 215, 369, 417
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 4 cut(s) 144, 386, 608, 790
MaeI CTAG 3 cut(s) 333, 455, 642
MaeIII GTNAC 1 cut(s) 487
MbiI CCGCTC 1 cut(s) 372
MboII GAAGA 2 cut(s) 462, 560
MhlI GDGCHC 3 cut(s) 257, 388, 422
MluCI AATT 3 cut(s) 123, 532, 604
MlyI GAGTC 1 cut(s) 719
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 7 cut(s) 9, 64, 186, 335, 418, 820, 852
Mph1103I ATGCAT 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 657
MseI TTAA 2 cut(s) 237, 717
MspI CCGG 4 cut(s) 299, 329, 359, 572
MspR9I CCNGG 4 cut(s) 81, 329, 359, 360
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 40
MwoI GCNNNNNNNGC 4 cut(s) 46, 505, 512, 710
NciI CCSGG 3 cut(s) 329, 359, 360
NdeI CATATG 1 cut(s) 266
NheI GCTAGC 1 cut(s) 332
NlaIII CATG 6 cut(s) 148, 192, 202, 215, 369, 462
NlaIV GGNNCC 6 cut(s) 48, 61, 62, 357, 386, 419
NmeAIII GCCGAG 2 cut(s) 75, 798
NmuCI GTSAC 1 cut(s) 487
NsiI ATGCAT 1 cut(s) 137
NspI RCATGY 1 cut(s) 462
PaeI GCATGC 1 cut(s) 462
PagI TCATGA 1 cut(s) 144
PctI GAATGC 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 2 cut(s) 86, 833
PinAI ACCGGT 1 cut(s) 298
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 719
PpsI GAGTC 1 cut(s) 719
PpuMI RGGWCCY 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 79
PspFI CCCAGC 1 cut(s) 897
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 6 cut(s) 48, 61, 62, 357, 386, 419
PspOMI GGGCCC 1 cut(s) 384
PspPI GGNCC 4 cut(s) 60, 355, 384, 385
PspPPI RGGWCCY 1 cut(s) 60
RsaI GTAC 1 cut(s) 782
RsaNI GTAC 1 cut(s) 781
SaqAI TTAA 2 cut(s) 237, 717
SatI GCNGC 1 cut(s) 219
Sau96I GGNCC 4 cut(s) 60, 355, 384, 385
ScaI AGTACT 1 cut(s) 782
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 4 cut(s) 81, 329, 359, 360
SduI GDGCHC 3 cut(s) 257, 388, 422
SetI ASST 9 cut(s) 20, 153, 310, 647, 660, 694, 824, 844, 884
SfaNI GCATC 4 cut(s) 144, 386, 608, 790
SinI GGWCC 1 cut(s) 60
SmaI CCCGGG 1 cut(s) 360
SphI GCATGC 1 cut(s) 462
Sse9I AATT 3 cut(s) 123, 532, 604
SsiI CCGC 2 cut(s) 34, 372
SspMI CTAG 3 cut(s) 333, 455, 642
StyD4I CCNGG 4 cut(s) 79, 327, 357, 358
TaaI ACNGT 2 cut(s) 229, 443
TaqI TCGA 1 cut(s) 555
TasI AATT 3 cut(s) 123, 532, 604
TatI WGTACW 1 cut(s) 780
TfiI GAWTC 2 cut(s) 86, 833
Tru1I TTAA 2 cut(s) 237, 717
Tru9I TTAA 2 cut(s) 237, 717
TscAI CASTG 1 cut(s) 492
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 1 cut(s) 161
TspMI CCCGGG 1 cut(s) 358
TspRI CASTG 1 cut(s) 492
VpaK11BI GGWCC 1 cut(s) 60
XagI CCTNNNNNAGG 1 cut(s) 412
XapI RAATTY 1 cut(s) 532
XceI RCATGY 1 cut(s) 462
XmaI CCCGGG 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 3 cut(s) 333, 455, 642
ZrmI AGTACT 1 cut(s) 782
Zsp2I ATGCAT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.