pycom17g03960

thaumatin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012284
Physical Location & Seq
Forward (+)
2703711 .. 2705000
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g03960.2

Sequence Viewer

Length: 891 bp
ATGTGGCCTGTTAGTGGTGATTTTTGTGTGCAAAAGGAATTAGACATTGTTTTGCTTCTCATGATTTGTCAACGGAGGGTCCAAATGTGTATACCACCTGAATGTACCATGAAGTTGCCTGACTCTGTTGCTGCTTTCTTTCTGTTCCTACTGTGGACTTTCATGTTATTTGGACAGGGAATGGCACATACAGTTACATTTTACATACAGAATAAGTGCCCCTTCCCCATATGGCCAGCGACTGCCCCCAACACCGGACAGCCTGTGATAGCTGATGGCGGCTTCTTCCTCCCCGCCGGACATACTCAGCCCATCACTGCCCCGTGGTCATGGAGCGGTCGGATTTGGGCTCGAACAGGATGCGACTTTGTCTCCAACTGCAAGCCTGCTTGCGAAACAGGAGATTGTGGCGGACGATTAGCATGCAATGGACTAATAGGCAATCCACCGGTGACACTAGTGGAAGTTTCGCTTCAAGGCGACAAGGGCAAGCCAAATTTCTACGCTGTGAGCGTGGTTGATGGATATAATCTTCCGGTTGCAATCTCATCAAGGCCGGTGGCATCCAATTGCGCTGTCAGAGGGTGTTTGAAAGATTTGAAAACTTGGTGCCCCGATGAGCTGAAGGTTTTAAACGACGAAGGGGAAGTTGTGGCGTGCAAAAGCGCTTGCTTAGCGTTTGATACAGACTCATTTTGTTGCCGGAATAAGTATGGAACCCCGGAAAAATGCAAGCCGAGTGTGTACTCGAAGATATTCAAAGATGCTTGCCCTTCGTATTACAGCTATGCTTATGATTCACCAACTCCATTGGTGACCTGCAAGGCAAGTGAGTACGTTATCACATTTTGTCCTGCAGGGTGGGGTGCTGCTGGCTATACCTCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

297

Amino Acids

32.27

Weight (kDa)

6.67

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40020
fragaria_vesca FvH4_6g49590
malus_domestica MD09G1043300.v1.1 MD17G1044800.v1.1
prunus_persica Prupe.3G274400_v2.0.a1
pyrus_communis pycom111g03390 pycom17g03960
rosa_chinensis RchiOBHm_Chr2g0169621
rosa_laevigata RLG00000021888
rosa_multiflora Rmu_sc0023940.1_g000005 Rmu_sc0023940.1_g000006
rosa_roxburghii Rroxscaffold_2G00081950
rosa_rugosa Rorug02G0541500
rosa_samantha Rh2AG613900 Rh2BG626100 Rh2CG595400 Rh2DG637000
rosa_wichuraiana Rw0G022920 Rw2G050870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 827
AccB1I GGYRCC 1 cut(s) 609
AccBSI CCGCTC 1 cut(s) 336
AccI GTMKAC 1 cut(s) 91
AciI CCGC 4 cut(s) 279, 294, 336, 411
AcoI YGGCCR 1 cut(s) 233
AcsI RAATTY 1 cut(s) 496
AcuI CTGAAG 1 cut(s) 644
AfaI GTAC 3 cut(s) 106, 746, 836
AfeI AGCGCT 1 cut(s) 667
AfiI CCNNNNNNNGG 2 cut(s) 14, 254
AgeI ACCGGT 1 cut(s) 448
AgsI TTSAA 4 cut(s) 476, 592, 601, 760
AhlI ACTAGT 1 cut(s) 457
AluBI AGCT 3 cut(s) 272, 622, 786
AluI AGCT 3 cut(s) 272, 622, 786
Alw26I GTCTC 1 cut(s) 376
AlwNI CAGNNNCTG 1 cut(s) 242
Aor51HI AGCGCT 1 cut(s) 667
AoxI GGCC 3 cut(s) 5, 233, 554
ApeKI GCWGC 2 cut(s) 131, 869
ApoI RAATTY 1 cut(s) 496
AsiGI ACCGGT 1 cut(s) 448
Asp700I GAANNNNTTC 1 cut(s) 755
AspLEI GCGC 2 cut(s) 575, 668
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 722
AsuHPI GGTGA 4 cut(s) 29, 463, 792, 826
AvaII GGWCC 1 cut(s) 79
BaeGI GKGCMC 2 cut(s) 221, 614
BalI TGGCCA 1 cut(s) 235
BanI GGYRCC 1 cut(s) 609
BanII GRGCYC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 118, 856
BccI CCATC 3 cut(s) 269, 320, 515
BcgI CGANNNNNNTGC 4 cut(s) 342, 376, 405, 439
BcnI CCSGG 1 cut(s) 722
BcoDI GTCTC 1 cut(s) 376
BcuI ACTAGT 1 cut(s) 457
BfaI CTAG 1 cut(s) 458
BfmI CTRYAG 1 cut(s) 855
BfoI RGCGCY 1 cut(s) 669
BfuAI ACCTGC 1 cut(s) 827
BisI GCNGC 3 cut(s) 132, 280, 870
BlpI GCTNAGC 1 cut(s) 673
BlsI GCNGC 3 cut(s) 133, 281, 871
Bme1390I CCNGG 1 cut(s) 722
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 3 cut(s) 80, 611, 718
BmrFI CCNGG 1 cut(s) 722
BmsI GCATC 3 cut(s) 350, 572, 754
Bpu1102I GCTNAGC 1 cut(s) 673
BpuMI CCSGG 1 cut(s) 722
BsaJI CCNNGG 2 cut(s) 323, 720
BsaWI WCCGGW 3 cut(s) 254, 448, 535
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 254
Bse118I RCCGGY 2 cut(s) 448, 556
Bse3DI GCAATG 1 cut(s) 433
BseDI CCNNGG 2 cut(s) 323, 720
BseGI GGATG 2 cut(s) 365, 563
BseLI CCNNNNNNNGG 2 cut(s) 14, 254
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 320
BseSI GKGCMC 2 cut(s) 221, 614
BseXI GCAGC 2 cut(s) 118, 856
Bsh1285I CGRYCG 1 cut(s) 340
BshFI GGCC 3 cut(s) 7, 235, 556
BshNI GGYRCC 1 cut(s) 609
BshTI ACCGGT 1 cut(s) 448
BsiEI CGRYCG 1 cut(s) 340
BsiSI CCGG 7 cut(s) 255, 297, 449, 536, 557, 703, 722
BslI CCNNNNNNNGG 2 cut(s) 14, 254
BsmAI GTCTC 1 cut(s) 376
BsnI GGCC 3 cut(s) 7, 235, 556
Bsp1286I GDGCHC 3 cut(s) 221, 352, 614
Bsp1720I GCTNAGC 1 cut(s) 673
BspACI CCGC 4 cut(s) 279, 294, 336, 411
BspANI GGCC 3 cut(s) 7, 235, 556
BspCNI CTCAG 1 cut(s) 319
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 80, 611, 718
BspMAI CTGCAG 1 cut(s) 859
BspMI ACCTGC 1 cut(s) 827
BspT107I GGYRCC 1 cut(s) 609
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 433
BsrFI RCCGGY 2 cut(s) 448, 556
BssAI RCCGGY 2 cut(s) 448, 556
BssECI CCNNGG 2 cut(s) 323, 720
BssNAI GTATAC 1 cut(s) 92
Bst1107I GTATAC 1 cut(s) 92
Bst4CI ACNGT 2 cut(s) 153, 193
BstDEI CTNAG 2 cut(s) 306, 673
BstDSI CCRYGG 1 cut(s) 323
BstEII GGTNACC 1 cut(s) 814
BstF5I GGATG 2 cut(s) 365, 563
BstH2I RGCGCY 1 cut(s) 669
BstHHI GCGC 2 cut(s) 575, 668
BstMAI GTCTC 1 cut(s) 376
BstMCI CGRYCG 1 cut(s) 340
BstMWI GCNNNNNNNGC 2 cut(s) 486, 674
BstNSI RCATGY 1 cut(s) 426
BstPI GGTNACC 1 cut(s) 814
BstSCI CCNGG 1 cut(s) 720
BstSFI CTRYAG 1 cut(s) 855
BstSLI GKGCMC 2 cut(s) 221, 614
BstV1I GCAGC 2 cut(s) 118, 856
BstZ17I GTATAC 1 cut(s) 92
BsuRI GGCC 3 cut(s) 7, 235, 556
BtgI CCRYGG 1 cut(s) 323
BtsCI GGATG 2 cut(s) 365, 563
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 315
BveI ACCTGC 1 cut(s) 827
CaiI CAGNNNCTG 1 cut(s) 242
CciI TCATGA 1 cut(s) 60
CfoI GCGC 2 cut(s) 575, 668
Cfr10I RCCGGY 2 cut(s) 448, 556
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 3 cut(s) 105, 745, 835
CspAI ACCGGT 1 cut(s) 448
CspCI CAANNNNNGTGG 2 cut(s) 540, 575
CviAII CATG 5 cut(s) 61, 109, 163, 330, 423
CviQI GTAC 3 cut(s) 105, 745, 835
DdeI CTNAG 2 cut(s) 306, 673
DraI TTTAAA 1 cut(s) 633
EaeI YGGCCR 1 cut(s) 233
EciI GGCGGA 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 79
Eco47III AGCGCT 1 cut(s) 667
Eco57I CTGAAG 1 cut(s) 644
Eco91I GGTNACC 1 cut(s) 814
EcoO65I GGTNACC 1 cut(s) 814
EcoT38I GRGCYC 1 cut(s) 352
FaeI CATG 5 cut(s) 64, 112, 166, 333, 426
FalI AAGNNNNNCTT 4 cut(s) 206, 238, 456, 488
FatI CATG 5 cut(s) 60, 108, 162, 329, 422
FauI CCCGC 1 cut(s) 301
FauNDI CATATG 1 cut(s) 230
FblI GTMKAC 1 cut(s) 91
Fnu4HI GCNGC 3 cut(s) 132, 280, 870
FokI GGATG 2 cut(s) 372, 550
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 3 cut(s) 132, 280, 870
FspBI CTAG 1 cut(s) 458
GlaI GCGC 2 cut(s) 574, 667
GluI GCNGC 3 cut(s) 132, 280, 870
HaeII RGCGCY 1 cut(s) 669
HaeIII GGCC 3 cut(s) 7, 235, 556
HapII CCGG 7 cut(s) 255, 297, 449, 536, 557, 703, 722
HhaI GCGC 2 cut(s) 575, 668
Hin1II CATG 5 cut(s) 64, 112, 166, 333, 426
Hin6I GCGC 2 cut(s) 573, 666
HinP1I GCGC 2 cut(s) 573, 666
HincII GTYRAC 1 cut(s) 71
HindII GTYRAC 1 cut(s) 71
HinfI GANTC 3 cut(s) 122, 689, 797
HpaII CCGG 7 cut(s) 255, 297, 449, 536, 557, 703, 722
HphI GGTGA 4 cut(s) 29, 463, 792, 826
Hpy166II GTNNAC 4 cut(s) 71, 92, 156, 745
Hpy188I TCNGA 2 cut(s) 342, 581
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 4 cut(s) 71, 92, 156, 745
Hpy99I CGWCG 1 cut(s) 641
HpyAV CCTTC 4 cut(s) 232, 619, 635, 783
HpyCH4III ACNGT 2 cut(s) 153, 193
HpyCH4IV ACGT 1 cut(s) 837
HpyCH4V TGCA 8 cut(s) 31, 381, 426, 542, 660, 732, 822, 857
HpyF10VI GCNNNNNNNGC 2 cut(s) 486, 674
HpyF3I CTNAG 2 cut(s) 306, 673
HpySE526I ACGT 1 cut(s) 837
Hsp92II CATG 5 cut(s) 64, 112, 166, 333, 426
HspAI GCGC 2 cut(s) 573, 666
LmnI GCTCC 1 cut(s) 333
Lsp1109I GCAGC 2 cut(s) 118, 856
LweI GCATC 3 cut(s) 350, 572, 754
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 837
MaeIII GTNAC 3 cut(s) 193, 451, 814
MbiI CCGCTC 1 cut(s) 336
MboII GAAGA 3 cut(s) 277, 524, 763
MfeI CAATTG 1 cut(s) 568
MhlI GDGCHC 3 cut(s) 221, 352, 614
MlsI TGGCCA 1 cut(s) 235
MluCI AATT 3 cut(s) 38, 496, 568
MluNI TGGCCA 1 cut(s) 235
MlyI GAGTC 2 cut(s) 116, 683
MmeI TCCRAC 2 cut(s) 320, 399
MnlI CCTC 3 cut(s) 69, 299, 575
Mox20I TGGCCA 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 755
MscI TGGCCA 1 cut(s) 235
MseI TTAA 1 cut(s) 632
MslI CAYNNNNRTG 1 cut(s) 100
Msp20I TGGCCA 1 cut(s) 235
MspI CCGG 7 cut(s) 255, 297, 449, 536, 557, 703, 722
MspR9I CCNGG 1 cut(s) 722
MunI CAATTG 1 cut(s) 568
MwoI GCNNNNNNNGC 2 cut(s) 486, 674
NciI CCSGG 1 cut(s) 722
NdeI CATATG 1 cut(s) 230
NlaIII CATG 5 cut(s) 64, 112, 166, 333, 426
NlaIV GGNNCC 3 cut(s) 80, 611, 718
NmeAIII GCCGAG 1 cut(s) 762
NmuCI GTSAC 2 cut(s) 451, 814
NspI RCATGY 1 cut(s) 426
PaeI GCATGC 1 cut(s) 426
PagI TCATGA 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 755
PfeI GAWTC 1 cut(s) 797
PflFI GACNNNGTC 1 cut(s) 368
PinAI ACCGGT 1 cut(s) 448
PkrI GCNGC 3 cut(s) 133, 281, 871
PleI GAGTC 2 cut(s) 116, 683
PpsI GAGTC 2 cut(s) 116, 683
PspEI GGTNACC 1 cut(s) 814
PspN4I GGNNCC 3 cut(s) 80, 611, 718
PspPI GGNCC 1 cut(s) 79
PstI CTGCAG 1 cut(s) 859
PstNI CAGNNNCTG 1 cut(s) 242
PsyI GACNNNGTC 1 cut(s) 368
RsaI GTAC 3 cut(s) 106, 746, 836
RsaNI GTAC 3 cut(s) 105, 745, 835
RseI CAYNNNNRTG 1 cut(s) 100
SaqAI TTAA 1 cut(s) 632
SatI GCNGC 3 cut(s) 132, 280, 870
Sau96I GGNCC 1 cut(s) 79
SbfI CCTGCAGG 1 cut(s) 859
SchI GAGTC 2 cut(s) 116, 683
ScrFI CCNGG 1 cut(s) 722
SdaI CCTGCAGG 1 cut(s) 859
SduI GDGCHC 3 cut(s) 221, 352, 614
SetI ASST 8 cut(s) 100, 274, 624, 630, 788, 821, 840, 884
SfaNI GCATC 3 cut(s) 350, 572, 754
SfcI CTRYAG 1 cut(s) 855
SgrAI CRCCGGYG 1 cut(s) 448
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 100
SpeI ACTAGT 1 cut(s) 457
SphI GCATGC 1 cut(s) 426
Sse8387I CCTGCAGG 1 cut(s) 859
Sse9I AATT 3 cut(s) 38, 496, 568
SsiI CCGC 4 cut(s) 279, 294, 336, 411
SspMI CTAG 1 cut(s) 458
StyD4I CCNGG 1 cut(s) 720
TaaI ACNGT 2 cut(s) 153, 193
TaiI ACGT 1 cut(s) 840
TaqI TCGA 2 cut(s) 352, 749
TasI AATT 3 cut(s) 38, 496, 568
TatI WGTACW 1 cut(s) 744
TauI GCSGC 1 cut(s) 282
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 1 cut(s) 632
Tru9I TTAA 1 cut(s) 632
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 2 cut(s) 451, 814
TseI GCWGC 2 cut(s) 131, 869
Tsp45I GTSAC 2 cut(s) 451, 814
TspDTI ATGAA 2 cut(s) 125, 151
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 1 cut(s) 322
Tth111I GACNNNGTC 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 496
XceI RCATGY 1 cut(s) 426
XmiI GTMKAC 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 755
XspI CTAG 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.