pycom111g03390

thaumatin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0012284
Physical Location & Seq
Forward (+)
2051931 .. 2052755
825 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g03390.1

Sequence Viewer

Length: 825 bp
ATGCGAAAATCGGTTTCCTTTGTTAAAGTAGATTCATATTTTTCAGTGTCTAAACTGTTCTTGAACTTTATTGTTACTAGTTTTGAATCAATATGTTATATTGCAGGTCATGGAACGGCACAGACAGTTGCGTTTTACATACACAACAAGTGCCCCTTCAACATATGGCCAGCAACTGCCCCCAACGCCGGAAAGGCCGTGATAGCTGATGGTGGCTTCTACCTCCCCGCTGGCAAGACTAAGCGCGTTACTGCCCCGTGGTCATGGAGCGGTCGGATTTGGGCCCGAACGGGATGCGACTTTGCTTCCAAGGGGAAGCCTGCTTGCGAAACAGGAGATTGTGACGGACGATTAGCATGCAATGGGTTAATAGGCAATCCACCAGTGACACTAGTGCAAGTTTCGGTTCAAGGCGACAAAGGCAAGCTGAATTTCTATGATGTGAGCGCGGTTGATGGATACAATCTTCCGGTCACAGTCTTATCAAACCCACTAAAATCCAATTGCACCATCGGAGGGTGTTTGAAAGATTTGAAAACTCGGTGCCCCAAAGAGCTTAAGGTTTTAAACAAGAAAGGGGAAGTTGTGGCGTGCAAAAGCGCCTGCTTGGCGTTTAATACGGATGCGTATTGTTGCCGGAAAGAGTATGGAACCCCAGAAAAATGCAAGCCGAGTGTGTACTCAAAGTTATTCAAAGAGGCTTGCCCTTCGTATTACAGCTATGCTTATGATACACCACCTCCATTGGTGACCTGCAAGGCAAGTAAGTATGTGATCACATTTTGTCCTGCAGAGTGGGGTGCTGCTGGGTACACCTCCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

275

Amino Acids

29.74

Weight (kDa)

9.04

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 49 - 263 2e-78 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40020
fragaria_vesca FvH4_6g49590
malus_domestica MD09G1043300.v1.1 MD17G1044800.v1.1
prunus_persica Prupe.3G274400_v2.0.a1
pyrus_communis pycom111g03390 pycom17g03960
rosa_chinensis RchiOBHm_Chr2g0169621
rosa_laevigata RLG00000021888
rosa_multiflora Rmu_sc0023940.1_g000005 Rmu_sc0023940.1_g000006
rosa_roxburghii Rroxscaffold_2G00081950
rosa_rugosa Rorug02G0541500
rosa_samantha Rh2AG613900 Rh2BG626100 Rh2CG595400 Rh2DG637000
rosa_wichuraiana Rw0G022920 Rw2G050870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 95, 761
AccB1I GGYRCC 1 cut(s) 543
AccBSI CCGCTC 1 cut(s) 270
AccII CGCG 2 cut(s) 246, 449
AciI CCGC 3 cut(s) 228, 270, 449
AcoI YGGCCR 1 cut(s) 167
AcsI RAATTY 1 cut(s) 430
AfaI GTAC 2 cut(s) 680, 812
AfiI CCNNNNNNNGG 2 cut(s) 188, 516
AflII CTTAAG 1 cut(s) 557
AgsI TTSAA 7 cut(s) 64, 86, 160, 410, 526, 535, 694
AhlI ACTAGT 2 cut(s) 77, 391
AluBI AGCT 4 cut(s) 206, 427, 556, 720
AluI AGCT 4 cut(s) 206, 427, 556, 720
AlwNI CAGNNNCTG 1 cut(s) 176
AoxI GGCC 3 cut(s) 167, 195, 282
ApaI GGGCCC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 803
ApoI RAATTY 1 cut(s) 430
AspLEI GCGC 3 cut(s) 246, 449, 602
AspS9I GGNCC 2 cut(s) 282, 283
AsuHPI GGTGA 1 cut(s) 760
BaeGI GKGCMC 3 cut(s) 155, 286, 548
BalI TGGCCA 1 cut(s) 169
BanI GGYRCC 1 cut(s) 543
BanII GRGCYC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 790
BccI CCATC 3 cut(s) 203, 449, 518
BceAI ACGGC 2 cut(s) 132, 182
BcgI CGANNNNNNTGC 4 cut(s) 276, 310, 339, 373
BciVI GTATCC 1 cut(s) 452
BclI TGATCA 1 cut(s) 774
BcuI ACTAGT 2 cut(s) 77, 391
BfaI CTAG 2 cut(s) 78, 392
BfmI CTRYAG 1 cut(s) 789
BfoI RGCGCY 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 557
BfuAI ACCTGC 2 cut(s) 95, 761
BfuI GTATCC 1 cut(s) 452
BglI GCCNNNNNGGC 2 cut(s) 194, 608
BisI GCNGC 1 cut(s) 804
BlsI GCNGC 1 cut(s) 805
BmgT120I GGNCC 2 cut(s) 282, 283
BmiI GGNNCC 3 cut(s) 284, 545, 652
BmsI GCATC 2 cut(s) 284, 613
BsaJI CCNNGG 2 cut(s) 257, 309
BsaWI WCCGGW 1 cut(s) 469
BsaXI ACNNNNNCTCC 2 cut(s) 724, 754
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 516
Bse1I ACTGG 1 cut(s) 383
Bse3DI GCAATG 1 cut(s) 367
BseDI CCNNGG 2 cut(s) 257, 309
BseGI GGATG 2 cut(s) 299, 628
BseLI CCNNNNNNNGG 2 cut(s) 188, 516
BseMI GCAATG 1 cut(s) 367
BseNI ACTGG 1 cut(s) 383
BseSI GKGCMC 3 cut(s) 155, 286, 548
BseXI GCAGC 1 cut(s) 790
BseYI CCCAGC 1 cut(s) 806
Bsh1236I CGCG 2 cut(s) 246, 449
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 3 cut(s) 169, 197, 284
BshNI GGYRCC 1 cut(s) 543
BsiEI CGRYCG 1 cut(s) 274
BsiSI CCGG 3 cut(s) 189, 470, 637
BslI CCNNNNNNNGG 2 cut(s) 188, 516
BsnI GGCC 3 cut(s) 169, 197, 284
Bsp120I GGGCCC 1 cut(s) 282
Bsp1286I GDGCHC 3 cut(s) 155, 286, 548
Bsp143I GATC 1 cut(s) 774
BspACI CCGC 3 cut(s) 228, 270, 449
BspANI GGCC 3 cut(s) 169, 197, 284
BspFNI CGCG 2 cut(s) 246, 449
BspLI GGNNCC 3 cut(s) 284, 545, 652
BspMAI CTGCAG 1 cut(s) 793
BspMI ACCTGC 2 cut(s) 95, 761
BspT107I GGYRCC 1 cut(s) 543
BspTI CTTAAG 1 cut(s) 557
BsrBI CCGCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 367
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 2 cut(s) 257, 309
BssMI GATC 1 cut(s) 774
BssT1I CCWWGG 1 cut(s) 309
Bst4CI ACNGT 3 cut(s) 57, 127, 478
BstAFI CTTAAG 1 cut(s) 557
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 257
BstEII GGTNACC 1 cut(s) 748
BstF5I GGATG 2 cut(s) 299, 628
BstFNI CGCG 2 cut(s) 246, 449
BstH2I RGCGCY 1 cut(s) 603
BstHHI GCGC 3 cut(s) 246, 449, 602
BstKTI GATC 1 cut(s) 777
BstMBI GATC 1 cut(s) 774
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 5 cut(s) 185, 194, 203, 420, 608
BstNSI RCATGY 1 cut(s) 360
BstPI GGTNACC 1 cut(s) 748
BstSFI CTRYAG 1 cut(s) 789
BstSLI GKGCMC 3 cut(s) 155, 286, 548
BstUI CGCG 2 cut(s) 246, 449
BstV1I GCAGC 1 cut(s) 790
BsuI GTATCC 1 cut(s) 452
BsuRI GGCC 3 cut(s) 169, 197, 284
BtgI CCRYGG 1 cut(s) 257
BtsCI GGATG 2 cut(s) 299, 628
BtsIMutI CAGTG 2 cut(s) 51, 390
BveI ACCTGC 2 cut(s) 95, 761
CaiI CAGNNNCTG 1 cut(s) 176
CfoI GCGC 3 cut(s) 246, 449, 602
Cfr13I GGNCC 2 cut(s) 282, 283
Csp6I GTAC 2 cut(s) 679, 811
CspCI CAANNNNNGTGG 2 cut(s) 726, 761
CviAII CATG 4 cut(s) 110, 264, 357, 820
CviQI GTAC 2 cut(s) 679, 811
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 776
DpnII GATC 1 cut(s) 774
DraI TTTAAA 1 cut(s) 567
EaeI YGGCCR 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 286
Eco91I GGTNACC 1 cut(s) 748
EcoO65I GGTNACC 1 cut(s) 748
EcoT14I CCWWGG 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 4 cut(s) 113, 267, 360, 823
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 4 cut(s) 109, 263, 356, 819
FauI CCCGC 1 cut(s) 235
FauNDI CATATG 1 cut(s) 164
FbaI TGATCA 1 cut(s) 774
Fnu4HI GCNGC 1 cut(s) 804
FokI GGATG 2 cut(s) 306, 635
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 804
FspBI CTAG 2 cut(s) 78, 392
GlaI GCGC 3 cut(s) 245, 448, 601
GluI GCNGC 1 cut(s) 804
GsaI CCCAGC 1 cut(s) 810
HaeII RGCGCY 1 cut(s) 603
HaeIII GGCC 3 cut(s) 169, 197, 284
HapII CCGG 3 cut(s) 189, 470, 637
HhaI GCGC 3 cut(s) 246, 449, 602
Hin1II CATG 4 cut(s) 113, 267, 360, 823
Hin6I GCGC 3 cut(s) 244, 447, 600
HinP1I GCGC 3 cut(s) 244, 447, 600
HinfI GANTC 2 cut(s) 32, 86
HpaII CCGG 3 cut(s) 189, 470, 637
HphI GGTGA 1 cut(s) 760
Hpy166II GTNNAC 2 cut(s) 679, 813
Hpy188I TCNGA 2 cut(s) 276, 515
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 2 cut(s) 679, 813
HpyAV CCTTC 2 cut(s) 166, 717
HpyCH4III ACNGT 3 cut(s) 57, 127, 478
HpyCH4V TGCA 8 cut(s) 104, 360, 397, 507, 594, 666, 756, 791
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 194, 203, 420, 608
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 4 cut(s) 113, 267, 360, 823
HspAI GCGC 3 cut(s) 244, 447, 600
Ksp22I TGATCA 1 cut(s) 774
Kzo9I GATC 1 cut(s) 774
LmnI GCTCC 1 cut(s) 267
Lsp1109I GCAGC 1 cut(s) 790
LweI GCATC 2 cut(s) 284, 613
MaeI CTAG 2 cut(s) 78, 392
MaeIII GTNAC 6 cut(s) 73, 247, 341, 385, 472, 748
MalI GATC 1 cut(s) 776
MbiI CCGCTC 1 cut(s) 270
MboI GATC 1 cut(s) 774
MboII GAAGA 1 cut(s) 458
MfeI CAATTG 1 cut(s) 502
MhlI GDGCHC 3 cut(s) 155, 286, 548
MlsI TGGCCA 1 cut(s) 169
MluCI AATT 2 cut(s) 430, 502
MluNI TGGCCA 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 4 cut(s) 233, 509, 691, 750
Mox20I TGGCCA 1 cut(s) 169
MscI TGGCCA 1 cut(s) 169
MseI TTAA 5 cut(s) 24, 368, 558, 566, 615
MslI CAYNNNNRTG 1 cut(s) 818
Msp20I TGGCCA 1 cut(s) 169
MspA1I CMGCKG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 3 cut(s) 189, 470, 637
MunI CAATTG 1 cut(s) 502
MvnI CGCG 2 cut(s) 246, 449
MwoI GCNNNNNNNGC 5 cut(s) 185, 194, 203, 420, 608
NdeI CATATG 1 cut(s) 164
NdeII GATC 1 cut(s) 774
NlaIII CATG 4 cut(s) 113, 267, 360, 823
NlaIV GGNNCC 3 cut(s) 284, 545, 652
NmeAIII GCCGAG 1 cut(s) 696
NmuCI GTSAC 4 cut(s) 341, 385, 472, 748
NspI RCATGY 1 cut(s) 360
PaeI GCATGC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 32, 86
PkrI GCNGC 1 cut(s) 805
PspEI GGTNACC 1 cut(s) 748
PspFI CCCAGC 1 cut(s) 806
PspN4I GGNNCC 3 cut(s) 284, 545, 652
PspOMI GGGCCC 1 cut(s) 282
PspPI GGNCC 2 cut(s) 282, 283
PstI CTGCAG 1 cut(s) 793
PstNI CAGNNNCTG 1 cut(s) 176
RsaI GTAC 2 cut(s) 680, 812
RsaNI GTAC 2 cut(s) 679, 811
RseI CAYNNNNRTG 1 cut(s) 818
SaqAI TTAA 5 cut(s) 24, 368, 558, 566, 615
SatI GCNGC 1 cut(s) 804
Sau3AI GATC 1 cut(s) 774
Sau96I GGNCC 2 cut(s) 282, 283
SduI GDGCHC 3 cut(s) 155, 286, 548
SfaNI GCATC 2 cut(s) 284, 613
SfcI CTRYAG 1 cut(s) 789
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
SpeI ACTAGT 2 cut(s) 77, 391
SphI GCATGC 1 cut(s) 360
Sse9I AATT 2 cut(s) 430, 502
SsiI CCGC 3 cut(s) 228, 270, 449
SspMI CTAG 2 cut(s) 78, 392
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 3 cut(s) 57, 127, 478
TasI AATT 2 cut(s) 430, 502
TatI WGTACW 1 cut(s) 678
TfiI GAWTC 2 cut(s) 32, 86
Tru1I TTAA 5 cut(s) 24, 368, 558, 566, 615
Tru9I TTAA 5 cut(s) 24, 368, 558, 566, 615
TscAI CASTG 2 cut(s) 51, 390
TseFI GTSAC 4 cut(s) 341, 385, 472, 748
TseI GCWGC 1 cut(s) 803
Tsp45I GTSAC 4 cut(s) 341, 385, 472, 748
TspDTI ATGAA 1 cut(s) 24
TspGWI ACGGA 2 cut(s) 360, 635
TspRI CASTG 2 cut(s) 51, 390
Vha464I CTTAAG 1 cut(s) 557
XapI RAATTY 1 cut(s) 430
XceI RCATGY 1 cut(s) 360
XspI CTAG 2 cut(s) 78, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.