FvH4_6g49590

thaumatin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012284
Physical Location & Seq
Reverse (-)
37130492 .. 37131632
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49590.t1

Sequence Viewer

Length: 780 bp
ATGAAGCTGCCAGTGTTTGTTGCTTCTTTTTCCCTGGTTCTAACATGGAGTTGCATGCTCTTTGGACACGGAGTAGCGCACACAGTTACGTTTTACATTCACAATAAGTGCCCCTTTCCCATATGGCCTGCAACTGCTCCCAACAATGGACAACCGGTGATAGCTGACGGCGGCTTCTCCCTCTCGGCTGGCCAGACTAAGCGCATTACTGCACCGTGGTCATGGAGCGGTAGGATTTGGGGCCGAACAGGATGCAACTTTGCCTCTAATTGGAGCCCTGCTTGTGAAACTGGAGACTGTGATGGAAGACTGGCTTGCAATGGACTGATAGGCACTCCACCAGTGACATTGGTGCAAATTGCACTTCAAGCTGACAAAGGCTTGCCAAATTACTATGATGTGAGCTTGGTTGATGGATACAATCTTCCGATTTCAGTCATGTTGAGGCCAGTAGCATCGAATTGTAGTATTAGTGGGTGCTTGAGAGACTTGAAAACAAGGTGTCCGGAAGAGCTTCAGGTTTTGAACAGCAAAGGAGAAGTGGTGGCTTGCAAAAGTGCCTGCTTGGCATTTAACAAGGACTCATTTTGTTGCAGAAATCAGTATGGAACTCCAGAAAAATGCAAGCCAAGTGTGTACTCCAAGATATTCAAAGATGCATGTCCCTCCTATTACAGCTATGCTTATGATTCACCACCTCCATTGGTGAACTGCAAGGCTAATGAGTATGTGATCACATTTTGTCCTTCAGGCTGGGGTGCTGAGCATACTTCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

260

Amino Acids

28.17

Weight (kDa)

8.26

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 35 - 249 1.9e-79 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40020
fragaria_vesca FvH4_6g49590
malus_domestica MD09G1043300.v1.1 MD17G1044800.v1.1
prunus_persica Prupe.3G274400_v2.0.a1
pyrus_communis pycom111g03390 pycom17g03960
rosa_chinensis RchiOBHm_Chr2g0169621
rosa_laevigata RLG00000021888
rosa_multiflora Rmu_sc0023940.1_g000005 Rmu_sc0023940.1_g000006
rosa_roxburghii Rroxscaffold_2G00081950
rosa_rugosa Rorug02G0541500
rosa_samantha Rh2AG613900 Rh2BG626100 Rh2CG595400 Rh2DG637000
rosa_wichuraiana Rw0G022920 Rw2G050870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 228
AccIII TCCGGA 1 cut(s) 505
AciI CCGC 2 cut(s) 171, 228
AcoI YGGCCR 1 cut(s) 190
AcuI CTGAAG 2 cut(s) 500, 732
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 2 cut(s) 146, 270
AgeI ACCGGT 1 cut(s) 154
AgsI TTSAA 4 cut(s) 368, 493, 526, 652
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 6 cut(s) 7, 164, 371, 405, 514, 678
AluI AGCT 6 cut(s) 7, 164, 371, 405, 514, 678
Alw26I GTCTC 2 cut(s) 288, 480
Aor13HI TCCGGA 1 cut(s) 505
AoxI GGCC 4 cut(s) 125, 190, 241, 446
ApeKI GCWGC 1 cut(s) 7
AsiGI ACCGGT 1 cut(s) 154
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 2 cut(s) 79, 204
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 3 cut(s) 169, 684, 718
BaeGI GKGCMC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 192
BanII GRGCYC 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 313
BccI CCATC 2 cut(s) 296, 407
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 234, 268
BciT130I CCWGG 1 cut(s) 35
BciVI GTATCC 1 cut(s) 410
BclI TGATCA 1 cut(s) 732
BcoDI GTCTC 2 cut(s) 288, 480
BfuI GTATCC 1 cut(s) 410
BglI GCCNNNNNGGC 1 cut(s) 566
BisI GCNGC 2 cut(s) 8, 172
BlpI GCTNAGC 1 cut(s) 762
BlsI GCNGC 2 cut(s) 9, 173
Bme1390I CCNGG 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 242, 275
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 3 cut(s) 242, 464, 646
BpiI GAAGAC 1 cut(s) 313
BpmI CTGGAG 2 cut(s) 312, 597
Bpu1102I GCTNAGC 1 cut(s) 762
BpuEI CTTGAG 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 33, 215
BsaWI WCCGGW 2 cut(s) 154, 505
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 270
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 5 cut(s) 11, 295, 315, 341, 449
Bse3DI GCAATG 1 cut(s) 325
BseAI TCCGGA 1 cut(s) 505
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 33, 215
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 146, 270
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 753
BseNI ACTGG 5 cut(s) 11, 295, 315, 341, 449
BseSI GKGCMC 1 cut(s) 113
BseYI CCCAGC 1 cut(s) 753
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 4 cut(s) 127, 192, 243, 448
BshTI ACCGGT 1 cut(s) 154
BsiSI CCGG 2 cut(s) 155, 506
BslFI GGGAC 1 cut(s) 648
BslI CCNNNNNNNGG 2 cut(s) 146, 270
BsmAI GTCTC 2 cut(s) 288, 480
BsmFI GGGAC 1 cut(s) 648
BsnI GGCC 4 cut(s) 127, 192, 243, 448
Bsp1286I GDGCHC 2 cut(s) 113, 278
Bsp13I TCCGGA 1 cut(s) 505
Bsp143I GATC 1 cut(s) 732
Bsp1720I GCTNAGC 1 cut(s) 762
BspACI CCGC 2 cut(s) 171, 228
BspANI GGCC 4 cut(s) 127, 192, 243, 448
BspCNI CTCAG 1 cut(s) 754
BspEI TCCGGA 1 cut(s) 505
BspLI GGNNCC 2 cut(s) 242, 275
BspQI GCTCTTC 1 cut(s) 504
BsrBI CCGCTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 5 cut(s) 11, 295, 315, 341, 449
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 33, 215
BssMI GATC 1 cut(s) 732
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 3 cut(s) 85, 216, 299
Bst6I CTCTTC 1 cut(s) 504
BstC8I GCNNGC 8 cut(s) 56, 129, 190, 316, 383, 550, 562, 626
BstDEI CTNAG 2 cut(s) 198, 762
BstDSI CCRYGG 1 cut(s) 215
BstF5I GGATG 1 cut(s) 257
BstHHI GCGC 2 cut(s) 79, 204
BstKTI GATC 1 cut(s) 735
BstMAI GTCTC 2 cut(s) 288, 480
BstMBI GATC 1 cut(s) 732
BstMWI GCNNNNNNNGC 2 cut(s) 368, 566
BstNI CCWGG 1 cut(s) 35
BstNSI RCATGY 2 cut(s) 58, 663
BstSCI CCNGG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 313
BsuI GTATCC 1 cut(s) 410
BsuRI GGCC 4 cut(s) 127, 192, 243, 448
BtgI CCRYGG 1 cut(s) 215
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 2 cut(s) 18, 348
Cac8I GCNNGC 8 cut(s) 56, 129, 190, 316, 383, 550, 562, 626
CfoI GCGC 2 cut(s) 79, 204
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 637
CspAI ACCGGT 1 cut(s) 154
CspCI CAANNNNNGTGG 2 cut(s) 684, 719
CviAII CATG 5 cut(s) 45, 55, 222, 439, 660
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 2 cut(s) 198, 762
DpnI GATC 1 cut(s) 734
DpnII GATC 1 cut(s) 732
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 278
Eco57I CTGAAG 2 cut(s) 500, 732
EcoRII CCWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 661
EcoT38I GRGCYC 1 cut(s) 278
FaeI CATG 5 cut(s) 48, 58, 225, 442, 663
FalI AAGNNNNNCTT 4 cut(s) 98, 130, 298, 330
FaqI GGGAC 1 cut(s) 648
FatI CATG 5 cut(s) 44, 54, 221, 438, 659
FauNDI CATATG 1 cut(s) 122
FbaI TGATCA 1 cut(s) 732
Fnu4HI GCNGC 2 cut(s) 8, 172
FokI GGATG 1 cut(s) 264
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 2 cut(s) 8, 172
GlaI GCGC 2 cut(s) 78, 203
GluI GCNGC 2 cut(s) 8, 172
GsaI CCCAGC 1 cut(s) 757
GsuI CTGGAG 2 cut(s) 312, 597
HaeIII GGCC 4 cut(s) 127, 192, 243, 448
HapII CCGG 2 cut(s) 155, 506
HhaI GCGC 2 cut(s) 79, 204
Hin1II CATG 5 cut(s) 48, 58, 225, 442, 663
Hin6I GCGC 2 cut(s) 77, 202
HinP1I GCGC 2 cut(s) 77, 202
HinfI GANTC 2 cut(s) 581, 689
HpaII CCGG 2 cut(s) 155, 506
HphI GGTGA 3 cut(s) 169, 684, 718
Hpy166II GTNNAC 2 cut(s) 637, 709
Hpy188I TCNGA 1 cut(s) 429
Hpy188III TCNNGA 2 cut(s) 506, 614
Hpy8I GTNNAC 2 cut(s) 637, 709
HpyAV CCTTC 1 cut(s) 756
HpyCH4III ACNGT 3 cut(s) 85, 216, 299
HpyCH4IV ACGT 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 566
HpyF3I CTNAG 2 cut(s) 198, 762
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 5 cut(s) 48, 58, 225, 442, 663
HspAI GCGC 2 cut(s) 77, 202
Kpn2I TCCGGA 1 cut(s) 505
Ksp22I TGATCA 1 cut(s) 732
Kzo9I GATC 1 cut(s) 732
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 3 cut(s) 142, 225, 273
LweI GCATC 3 cut(s) 242, 464, 646
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 2 cut(s) 85, 343
MalI GATC 1 cut(s) 734
MbiI CCGCTC 1 cut(s) 228
MboI GATC 1 cut(s) 732
MboII GAAGA 3 cut(s) 318, 416, 521
MhlI GDGCHC 2 cut(s) 113, 278
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 4 cut(s) 268, 357, 388, 460
MluNI TGGCCA 1 cut(s) 192
MlyI GAGTC 1 cut(s) 575
MnlI CCTC 5 cut(s) 191, 274, 438, 676, 708
Mox20I TGGCCA 1 cut(s) 192
Mph1103I ATGCAT 1 cut(s) 661
MroI TCCGGA 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 513
MscI TGGCCA 1 cut(s) 192
MseI TTAA 1 cut(s) 573
Msp20I TGGCCA 1 cut(s) 192
MspI CCGG 2 cut(s) 155, 506
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 368, 566
NdeI CATATG 1 cut(s) 122
NdeII GATC 1 cut(s) 732
NlaIII CATG 5 cut(s) 48, 58, 225, 442, 663
NlaIV GGNNCC 2 cut(s) 242, 275
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 343
NsiI ATGCAT 1 cut(s) 661
NspI RCATGY 2 cut(s) 58, 663
PaeI GCATGC 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 1 cut(s) 689
PinAI ACCGGT 1 cut(s) 154
PkrI GCNGC 2 cut(s) 9, 173
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 753
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 242, 275
PspPI GGNCC 1 cut(s) 241
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 2 cut(s) 8, 172
Sau3AI GATC 1 cut(s) 732
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 2 cut(s) 113, 278
SfaNI GCATC 3 cut(s) 242, 464, 646
SmlI CTYRAG 1 cut(s) 481
SmoI CTYRAG 1 cut(s) 481
SphI GCATGC 1 cut(s) 58
Sse9I AATT 4 cut(s) 268, 357, 388, 460
SsiI CCGC 2 cut(s) 171, 228
StyD4I CCNGG 1 cut(s) 33
TaaI ACNGT 3 cut(s) 85, 216, 299
TaiI ACGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 458
TasI AATT 4 cut(s) 268, 357, 388, 460
TatI WGTACW 1 cut(s) 636
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 689
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 2 cut(s) 18, 348
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 2 cut(s) 18, 348
XceI RCATGY 2 cut(s) 58, 663
XmnI GAANNNNTTC 1 cut(s) 513
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.