Rmu_sc0023940.1_g000005

thaumatin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023940.1
OG0012284
Physical Location & Seq
Forward (+)
19981 .. 20875
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023940.1_g000005.1.cds

Sequence Viewer

Length: 780 bp
atgaagctaccagtgtttgttgcttcttttcctctgtttctaacatggagttccatgttatttggacatggagcagcacagacagttaaatttaaaatacacaacaagtgccccttccccatatggcctgcaactgctcccaacagtggtcaaccggtgatagctgatggtggcttctccctcccggctggcaagactaagagcattacggccccggggtcatggagcggtcggatttgggcccgaacaggatgcgactttgcctctaataggagccctgcttgtgaaactggagactgtgatggaagactagcatgcaatggactaataggcactccaccagtgacattggtgcaagttgcgcttcaagccgacaaaggcaacccaaattcctatgatgtgagcgtggtcgatggatacaatcttccggtttcagtcctatcaaagcccgtagcttcgaattgtgctattagtgggtgcttgaaagacttgaaaactaggtgtccagaaaagcttcaggttttgaacagcgcaaggaaagtagtagcttgcaaaagtgcctgcttggcatttaataaggactcatattgttgcagaaatcagtatggaactccagataaatgcaagccgagtgagtactccaagatattcaaagatgcttgtccctcttattatagctatgcttatgattcaccacctccattggtgaactgcaaggccgatgagtatttgattaccttttgtccttcaggctggggtggtgagcatgcttccatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

259

Amino Acids

27.74

Weight (kDa)

8.73

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40020
fragaria_vesca FvH4_6g49590
malus_domestica MD09G1043300.v1.1 MD17G1044800.v1.1
prunus_persica Prupe.3G274400_v2.0.a1
pyrus_communis pycom111g03390 pycom17g03960
rosa_chinensis RchiOBHm_Chr2g0169621
rosa_laevigata RLG00000021888
rosa_multiflora Rmu_sc0023940.1_g000005 Rmu_sc0023940.1_g000006
rosa_roxburghii Rroxscaffold_2G00081950
rosa_rugosa Rorug02G0541500
rosa_samantha Rh2AG613900 Rh2BG626100 Rh2CG595400 Rh2DG637000
rosa_wichuraiana Rw0G022920 Rw2G050870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 228
AciI CCGC 1 cut(s) 228
AcsI RAATTY 2 cut(s) 89, 388
AcuI CTGAAG 2 cut(s) 500, 732
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 2 cut(s) 146, 270
AgeI ACCGGT 1 cut(s) 154
AgsI TTSAA 5 cut(s) 368, 484, 493, 526, 652
AluBI AGCT 6 cut(s) 7, 164, 455, 514, 548, 678
AluI AGCT 6 cut(s) 7, 164, 455, 514, 548, 678
Alw26I GTCTC 1 cut(s) 288
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 4 cut(s) 125, 210, 240, 717
ApaI GGGCCC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 89, 388
AsiGI ACCGGT 1 cut(s) 154
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 2 cut(s) 364, 533
AspS9I GGNCC 3 cut(s) 211, 240, 241
AsuC2I CCSGG 3 cut(s) 185, 215, 216
AsuHPI GGTGA 4 cut(s) 169, 684, 718, 773
AsuII TTCGAA 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 214
BaeGI GKGCMC 2 cut(s) 113, 244
BanII GRGCYC 2 cut(s) 244, 278
BbsI GAAGAC 1 cut(s) 313
BbvI GCAGC 1 cut(s) 86
BccI CCATC 3 cut(s) 161, 296, 407
BceAI ACGGC 1 cut(s) 225
BcgI CGANNNNNNTGC 2 cut(s) 234, 268
BciVI GTATCC 1 cut(s) 410
BcnI CCSGG 3 cut(s) 185, 215, 216
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 2 cut(s) 311, 498
BfuI GTATCC 1 cut(s) 410
BglI GCCNNNNNGGC 1 cut(s) 566
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmcAI AGTACT 1 cut(s) 638
Bme1390I CCNGG 3 cut(s) 185, 215, 216
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 3 cut(s) 211, 240, 241
BmiI GGNNCC 3 cut(s) 213, 242, 275
BmrFI CCNGG 3 cut(s) 185, 215, 216
BmsI GCATC 2 cut(s) 242, 646
BpiI GAAGAC 1 cut(s) 313
BpmI CTGGAG 2 cut(s) 312, 597
Bpu14I TTCGAA 1 cut(s) 458
BpuMI CCSGG 3 cut(s) 185, 215, 216
BsaJI CCNNGG 3 cut(s) 213, 214, 215
BsaWI WCCGGW 2 cut(s) 154, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 270
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 3 cut(s) 11, 295, 341
Bse3DI GCAATG 1 cut(s) 325
BseDI CCNNGG 3 cut(s) 213, 214, 215
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 146, 270
BseMI GCAATG 1 cut(s) 325
BseNI ACTGG 3 cut(s) 11, 295, 341
BseSI GKGCMC 2 cut(s) 113, 244
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 753
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 4 cut(s) 127, 212, 242, 719
BshTI ACCGGT 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 4 cut(s) 155, 185, 215, 428
BslFI GGGAC 1 cut(s) 648
BslI CCNNNNNNNGG 2 cut(s) 146, 270
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 648
BsnI GGCC 4 cut(s) 127, 212, 242, 719
BsoBI CYCGRG 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 458
Bsp120I GGGCCC 1 cut(s) 240
Bsp1286I GDGCHC 3 cut(s) 113, 244, 278
BspACI CCGC 1 cut(s) 228
BspANI GGCC 4 cut(s) 127, 212, 242, 719
BspLI GGNNCC 3 cut(s) 213, 242, 275
BspT104I TTCGAA 1 cut(s) 458
BsrBI CCGCTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 3 cut(s) 11, 295, 341
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 3 cut(s) 213, 214, 215
Bst4CI ACNGT 3 cut(s) 85, 146, 299
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 7 cut(s) 129, 190, 316, 550, 562, 626, 768
BstDEI CTNAG 1 cut(s) 198
BstENI CCTNNNNNAGG 1 cut(s) 268
BstF5I GGATG 1 cut(s) 257
BstHHI GCGC 2 cut(s) 364, 533
BstMAI GTCTC 1 cut(s) 288
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 3 cut(s) 361, 368, 566
BstNSI RCATGY 2 cut(s) 318, 770
BstSCI CCNGG 3 cut(s) 183, 213, 214
BstSLI GKGCMC 2 cut(s) 113, 244
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 313
BsuI GTATCC 1 cut(s) 410
BsuRI GGCC 4 cut(s) 127, 212, 242, 719
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 3 cut(s) 18, 151, 348
Cac8I GCNNGC 7 cut(s) 129, 190, 316, 550, 562, 626, 768
CfoI GCGC 2 cut(s) 364, 533
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 3 cut(s) 211, 240, 241
Cfr9I CCCGGG 1 cut(s) 214
Csp6I GTAC 1 cut(s) 637
CspAI ACCGGT 1 cut(s) 154
CspCI CAANNNNNGTGG 2 cut(s) 684, 719
CviAII CATG 6 cut(s) 45, 55, 68, 222, 315, 767
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 1 cut(s) 198
DraI TTTAAA 1 cut(s) 94
Eco24I GRGCYC 2 cut(s) 244, 278
Eco57I CTGAAG 2 cut(s) 500, 732
Eco88I CYCGRG 1 cut(s) 214
EcoNI CCTNNNNNAGG 1 cut(s) 268
EcoT38I GRGCYC 2 cut(s) 244, 278
FaeI CATG 6 cut(s) 48, 58, 71, 225, 318, 770
FalI AAGNNNNNCTT 4 cut(s) 98, 130, 348, 380
FaqI GGGAC 1 cut(s) 648
FatI CATG 6 cut(s) 44, 54, 67, 221, 314, 766
FauNDI CATATG 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 264
FriOI GRGCYC 2 cut(s) 244, 278
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 311, 498
GlaI GCGC 2 cut(s) 363, 532
GluI GCNGC 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 757
GsuI CTGGAG 2 cut(s) 312, 597
HaeIII GGCC 4 cut(s) 127, 212, 242, 719
HapII CCGG 4 cut(s) 155, 185, 215, 428
HhaI GCGC 2 cut(s) 364, 533
Hin1II CATG 6 cut(s) 48, 58, 71, 225, 318, 770
Hin6I GCGC 2 cut(s) 362, 531
HinP1I GCGC 2 cut(s) 362, 531
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 2 cut(s) 581, 689
HpaII CCGG 4 cut(s) 155, 185, 215, 428
HphI GGTGA 4 cut(s) 169, 684, 718, 773
Hpy166II GTNNAC 2 cut(s) 152, 709
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 2 cut(s) 506, 614
Hpy8I GTNNAC 2 cut(s) 152, 709
HpyAV CCTTC 2 cut(s) 124, 756
HpyCH4III ACNGT 3 cut(s) 85, 146, 299
HpyCH4V TGCA 7 cut(s) 131, 318, 355, 552, 594, 624, 714
HpyF10VI GCNNNNNNNGC 3 cut(s) 361, 368, 566
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 6 cut(s) 48, 58, 71, 225, 318, 770
HspAI GCGC 2 cut(s) 362, 531
LmnI GCTCC 4 cut(s) 71, 142, 225, 273
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 2 cut(s) 242, 646
MaeI CTAG 2 cut(s) 311, 498
MaeIII GTNAC 1 cut(s) 343
MbiI CCGCTC 1 cut(s) 228
MboII GAAGA 2 cut(s) 318, 416
MhlI GDGCHC 3 cut(s) 113, 244, 278
MluCI AATT 3 cut(s) 89, 388, 460
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 5 cut(s) 42, 191, 274, 676, 708
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 3 cut(s) 87, 93, 573
MspI CCGG 4 cut(s) 155, 185, 215, 428
MspR9I CCNGG 3 cut(s) 185, 215, 216
MwoI GCNNNNNNNGC 3 cut(s) 361, 368, 566
NciI CCSGG 3 cut(s) 185, 215, 216
NdeI CATATG 1 cut(s) 122
NlaIII CATG 6 cut(s) 48, 58, 71, 225, 318, 770
NlaIV GGNNCC 3 cut(s) 213, 242, 275
NmeAIII GCCGAG 1 cut(s) 654
NmuCI GTSAC 1 cut(s) 343
NspI RCATGY 2 cut(s) 318, 770
NspV TTCGAA 1 cut(s) 458
PaeI GCATGC 2 cut(s) 318, 770
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 1 cut(s) 689
PinAI ACCGGT 1 cut(s) 154
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
PspFI CCCAGC 1 cut(s) 753
PspN4I GGNNCC 3 cut(s) 213, 242, 275
PspOMI GGGCCC 1 cut(s) 240
PspPI GGNCC 3 cut(s) 211, 240, 241
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SaqAI TTAA 3 cut(s) 87, 93, 573
SatI GCNGC 1 cut(s) 75
Sau96I GGNCC 3 cut(s) 211, 240, 241
ScaI AGTACT 1 cut(s) 638
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 3 cut(s) 185, 215, 216
SduI GDGCHC 3 cut(s) 113, 244, 278
SfaNI GCATC 2 cut(s) 242, 646
SfuI TTCGAA 1 cut(s) 458
SmaI CCCGGG 1 cut(s) 216
SphI GCATGC 2 cut(s) 318, 770
Sse9I AATT 3 cut(s) 89, 388, 460
SsiI CCGC 1 cut(s) 228
SspMI CTAG 2 cut(s) 311, 498
StyD4I CCNGG 3 cut(s) 183, 213, 214
TaaI ACNGT 3 cut(s) 85, 146, 299
TaqI TCGA 2 cut(s) 411, 458
TasI AATT 3 cut(s) 89, 388, 460
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 1 cut(s) 689
Tru1I TTAA 3 cut(s) 87, 93, 573
Tru9I TTAA 3 cut(s) 87, 93, 573
TscAI CASTG 3 cut(s) 18, 151, 348
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 214
TspRI CASTG 3 cut(s) 18, 151, 348
XagI CCTNNNNNAGG 1 cut(s) 268
XapI RAATTY 2 cut(s) 89, 388
XceI RCATGY 2 cut(s) 318, 770
XmaI CCCGGG 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 2 cut(s) 311, 498
ZrmI AGTACT 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.