MD09G1043300.v1.1

thaumatin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0012284
Physical Location & Seq
Forward (+)
2791828 .. 2793009
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1043300.v1.1.491

Sequence Viewer

Length: 789 bp
ATGAAGTCGCCTGACTTTGTTGCTGCTTTCTTTCTGTTCCTAGTGTGGACTTTCATCTTTTTTGGTCATGGAACGGCACAGACAGTTGCGTTTTACGTACACAACAAGTGCCCCTTCAACATATGGCCAGCAACTGCCCCCAACGCCGGAAAGGCCGTGATAGCTGATGGTGGCTTCTACCTCCCCGCTGGCAAGACTCAGCGCGTTACTGCCCCGTGGTCATGGAGCGGTCGGATTTGGGCGCGAACAGGATGCAACTTTGTTTCCAACGGGAATCCTGCTTGCGAAACAGGAGATTGTGACGGACGATTAGCATGCAAAGGGCTAATAGGCAATCCACCAGTGACACTAGTGCAAGTTTCAGTTCAAGGCGACAAAGACAAGCTGAATTTCTACGATGTGAGCGTGGTTGATGGATACAATCTTCCGGTCGTGGTCTTATCAAATCCAGTAGCATCCAATTGCACTATCGGAGGGTGTTTGAAAGATTTGAAAACTCGGTGCCCCAAAGAGCTTAAGGTTTTAAACAAGAAAGGGGAAGTTGTGGCGTGCAAAAGCGCTTGCTTGGCGTTTAATACGGACGCGTATTGTTGCCGGAAAGAGTATGGAACCCCAGAAAAATGCAAGCCGAGTGTGTACTCAAAGTTATTCAAAGATGCTTGCCCTTCGTATTACAGCTATGCTTATGATACACCACCTCCATTGGTGACCTGCAAGGCGAGTAAGTATGTGATCACATTTTGTCCTGCGGGGTGGGGTGCTGCTGGTGCTGGGTATATCTCCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

263

Amino Acids

28.33

Weight (kDa)

8.86

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 35 - 249 2.4e-78 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40020
fragaria_vesca FvH4_6g49590
malus_domestica MD09G1043300.v1.1 MD17G1044800.v1.1
prunus_persica Prupe.3G274400_v2.0.a1
pyrus_communis pycom111g03390 pycom17g03960
rosa_chinensis RchiOBHm_Chr2g0169621
rosa_laevigata RLG00000021888
rosa_multiflora Rmu_sc0023940.1_g000005 Rmu_sc0023940.1_g000006
rosa_roxburghii Rroxscaffold_2G00081950
rosa_rugosa Rorug02G0541500
rosa_samantha Rh2AG613900 Rh2BG626100 Rh2CG595400 Rh2DG637000
rosa_wichuraiana Rw0G022920 Rw2G050870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 719
AccB1I GGYRCC 1 cut(s) 501
AccBSI CCGCTC 1 cut(s) 228
AccII CGCG 3 cut(s) 204, 244, 584
AciI CCGC 3 cut(s) 186, 228, 749
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 388
AfaI GTAC 2 cut(s) 99, 638
AfeI AGCGCT 1 cut(s) 559
AfiI CCNNNNNNNGG 1 cut(s) 146
AflII CTTAAG 1 cut(s) 515
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 5 cut(s) 118, 368, 484, 493, 652
AhlI ACTAGT 1 cut(s) 349
AluBI AGCT 4 cut(s) 164, 385, 514, 678
AluI AGCT 4 cut(s) 164, 385, 514, 678
AlwNI CAGNNNCTG 1 cut(s) 134
Aor51HI AGCGCT 1 cut(s) 559
AoxI GGCC 2 cut(s) 125, 153
ApeKI GCWGC 2 cut(s) 23, 761
ApoI RAATTY 1 cut(s) 388
AspLEI GCGC 3 cut(s) 204, 244, 560
AsuHPI GGTGA 1 cut(s) 718
BaeGI GKGCMC 2 cut(s) 113, 506
BalI TGGCCA 1 cut(s) 127
BanI GGYRCC 1 cut(s) 501
BbvI GCAGC 2 cut(s) 10, 748
BccI CCATC 2 cut(s) 161, 407
BceAI ACGGC 2 cut(s) 90, 140
BcgI CGANNNNNNTGC 4 cut(s) 234, 268, 297, 331
BciVI GTATCC 1 cut(s) 410
BclI TGATCA 1 cut(s) 732
BcuI ACTAGT 1 cut(s) 349
BfaI CTAG 2 cut(s) 41, 350
BfoI RGCGCY 1 cut(s) 561
BfrI CTTAAG 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 719
BfuI GTATCC 1 cut(s) 410
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 2 cut(s) 24, 762
BlsI GCNGC 2 cut(s) 25, 763
BmiI GGNNCC 2 cut(s) 503, 610
BmsI GCATC 3 cut(s) 242, 464, 646
BsaAI YACGTR 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 427
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 341, 449
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 257, 455
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 2 cut(s) 341, 449
BseSI GKGCMC 2 cut(s) 113, 506
BseXI GCAGC 2 cut(s) 10, 748
BseYI CCCAGC 1 cut(s) 770
Bsh1236I CGCG 3 cut(s) 204, 244, 584
Bsh1285I CGRYCG 2 cut(s) 232, 432
BshFI GGCC 2 cut(s) 127, 155
BshNI GGYRCC 1 cut(s) 501
BsiEI CGRYCG 2 cut(s) 232, 432
BsiSI CCGG 3 cut(s) 147, 428, 595
BslI CCNNNNNNNGG 1 cut(s) 146
BsnI GGCC 2 cut(s) 127, 155
Bsp1286I GDGCHC 2 cut(s) 113, 506
Bsp143I GATC 1 cut(s) 732
BspACI CCGC 3 cut(s) 186, 228, 749
BspANI GGCC 2 cut(s) 127, 155
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 3 cut(s) 204, 244, 584
BspLI GGNNCC 2 cut(s) 503, 610
BspMI ACCTGC 1 cut(s) 719
BspT107I GGYRCC 1 cut(s) 501
BspTI CTTAAG 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 228
BsrI ACTGG 2 cut(s) 341, 449
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 1 cut(s) 732
Bst4CI ACNGT 1 cut(s) 85
BstAFI CTTAAG 1 cut(s) 515
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 8 cut(s) 129, 190, 283, 316, 550, 562, 626, 661
BstDEI CTNAG 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 215
BstEII GGTNACC 1 cut(s) 706
BstF5I GGATG 2 cut(s) 257, 455
BstFNI CGCG 3 cut(s) 204, 244, 584
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 3 cut(s) 204, 244, 560
BstKTI GATC 1 cut(s) 735
BstMBI GATC 1 cut(s) 732
BstMCI CGRYCG 2 cut(s) 232, 432
BstMWI GCNNNNNNNGC 5 cut(s) 143, 152, 161, 566, 767
BstNSI RCATGY 1 cut(s) 318
BstPI GGTNACC 1 cut(s) 706
BstSLI GKGCMC 2 cut(s) 113, 506
BstSNI TACGTA 1 cut(s) 97
BstUI CGCG 3 cut(s) 204, 244, 584
BstV1I GCAGC 2 cut(s) 10, 748
BsuI GTATCC 1 cut(s) 410
BsuRI GGCC 2 cut(s) 127, 155
BtgI CCRYGG 1 cut(s) 215
BtsCI GGATG 2 cut(s) 257, 455
BtsIMutI CAGTG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 719
Cac8I GCNNGC 8 cut(s) 129, 190, 283, 316, 550, 562, 626, 661
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 3 cut(s) 204, 244, 560
CseI GACGC 1 cut(s) 590
Csp6I GTAC 2 cut(s) 98, 637
CspCI CAANNNNNGTGG 2 cut(s) 684, 719
CviAII CATG 4 cut(s) 68, 222, 315, 784
CviJI RGCY 9 cut(s) 127, 155, 164, 174, 325, 385, 514, 628, 678
CviKI_1 RGCY 9 cut(s) 127, 155, 164, 174, 325, 385, 514, 628, 678
CviQI GTAC 2 cut(s) 98, 637
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 734
DpnII GATC 1 cut(s) 732
DraI TTTAAA 1 cut(s) 525
EaeI YGGCCR 1 cut(s) 125
Eco105I TACGTA 1 cut(s) 97
Eco47III AGCGCT 1 cut(s) 559
Eco91I GGTNACC 1 cut(s) 706
EcoO65I GGTNACC 1 cut(s) 706
FaeI CATG 4 cut(s) 71, 225, 318, 787
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FatI CATG 4 cut(s) 67, 221, 314, 783
FauI CCCGC 2 cut(s) 193, 742
FauNDI CATATG 1 cut(s) 122
FbaI TGATCA 1 cut(s) 732
Fnu4HI GCNGC 2 cut(s) 24, 762
FokI GGATG 2 cut(s) 264, 442
Fsp4HI GCNGC 2 cut(s) 24, 762
FspBI CTAG 2 cut(s) 41, 350
GlaI GCGC 3 cut(s) 203, 243, 559
GluI GCNGC 2 cut(s) 24, 762
GsaI CCCAGC 1 cut(s) 774
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 2 cut(s) 127, 155
HapII CCGG 3 cut(s) 147, 428, 595
HgaI GACGC 1 cut(s) 590
HhaI GCGC 3 cut(s) 204, 244, 560
Hin1II CATG 4 cut(s) 71, 225, 318, 787
Hin6I GCGC 3 cut(s) 202, 242, 558
HinP1I GCGC 3 cut(s) 202, 242, 558
HinfI GANTC 2 cut(s) 196, 274
HpaII CCGG 3 cut(s) 147, 428, 595
HphI GGTGA 1 cut(s) 718
Hpy166II GTNNAC 3 cut(s) 48, 100, 637
Hpy188I TCNGA 2 cut(s) 234, 473
Hpy8I GTNNAC 3 cut(s) 48, 100, 637
HpyAV CCTTC 2 cut(s) 124, 675
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 7 cut(s) 255, 318, 355, 465, 552, 624, 714
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 152, 161, 566, 767
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 4 cut(s) 71, 225, 318, 787
HspAI GCGC 3 cut(s) 202, 242, 558
Ksp22I TGATCA 1 cut(s) 732
Kzo9I GATC 1 cut(s) 732
LmnI GCTCC 1 cut(s) 225
Lsp1109I GCAGC 2 cut(s) 10, 748
LweI GCATC 3 cut(s) 242, 464, 646
MaeI CTAG 2 cut(s) 41, 350
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 4 cut(s) 205, 299, 343, 706
MalI GATC 1 cut(s) 734
MbiI CCGCTC 1 cut(s) 228
MboI GATC 1 cut(s) 732
MboII GAAGA 1 cut(s) 416
MfeI CAATTG 1 cut(s) 460
MhlI GDGCHC 2 cut(s) 113, 506
MlsI TGGCCA 1 cut(s) 127
MluCI AATT 2 cut(s) 388, 460
MluI ACGCGT 1 cut(s) 582
MluNI TGGCCA 1 cut(s) 127
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 2 cut(s) 212, 291
MnlI CCTC 3 cut(s) 191, 467, 708
Mox20I TGGCCA 1 cut(s) 127
MscI TGGCCA 1 cut(s) 127
MseI TTAA 3 cut(s) 516, 524, 573
Msp20I TGGCCA 1 cut(s) 127
MspA1I CMGCKG 1 cut(s) 188
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 3 cut(s) 147, 428, 595
MunI CAATTG 1 cut(s) 460
MvnI CGCG 3 cut(s) 204, 244, 584
MwoI GCNNNNNNNGC 5 cut(s) 143, 152, 161, 566, 767
NdeI CATATG 1 cut(s) 122
NdeII GATC 1 cut(s) 732
NlaIII CATG 4 cut(s) 71, 225, 318, 787
NlaIV GGNNCC 2 cut(s) 503, 610
NmeAIII GCCGAG 1 cut(s) 654
NmuCI GTSAC 3 cut(s) 299, 343, 706
NspI RCATGY 1 cut(s) 318
PaeI GCATGC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PfeI GAWTC 1 cut(s) 274
PkrI GCNGC 2 cut(s) 25, 763
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 706
PspFI CCCAGC 1 cut(s) 770
PspN4I GGNNCC 2 cut(s) 503, 610
PstNI CAGNNNCTG 1 cut(s) 134
RsaI GTAC 2 cut(s) 99, 638
RsaNI GTAC 2 cut(s) 98, 637
SaqAI TTAA 3 cut(s) 516, 524, 573
SatI GCNGC 2 cut(s) 24, 762
Sau3AI GATC 1 cut(s) 732
SchI GAGTC 1 cut(s) 190
SduI GDGCHC 2 cut(s) 113, 506
SetI ASST 9 cut(s) 99, 166, 183, 387, 516, 522, 680, 700, 713
SfaNI GCATC 3 cut(s) 242, 464, 646
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
SnaBI TACGTA 1 cut(s) 97
SpeI ACTAGT 1 cut(s) 349
SphI GCATGC 1 cut(s) 318
Sse9I AATT 2 cut(s) 388, 460
SsiI CCGC 3 cut(s) 186, 228, 749
SspMI CTAG 2 cut(s) 41, 350
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 99
TasI AATT 2 cut(s) 388, 460
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 3 cut(s) 516, 524, 573
Tru9I TTAA 3 cut(s) 516, 524, 573
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 3 cut(s) 299, 343, 706
TseI GCWGC 2 cut(s) 23, 761
Tsp45I GTSAC 3 cut(s) 299, 343, 706
TspDTI ATGAA 2 cut(s) 17, 43
TspGWI ACGGA 2 cut(s) 318, 593
TspRI CASTG 1 cut(s) 348
Vha464I CTTAAG 1 cut(s) 515
XapI RAATTY 1 cut(s) 388
XceI RCATGY 1 cut(s) 318
XspI CTAG 2 cut(s) 41, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.